Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50867 * 2 1 4 4 C 1.53044 * 109.49180 * 239.94288 * 2 1 3 5 5 N 1.46954 * 109.36693 * 181.63678 * 4 2 1 6 6 C 1.46957 * 110.88513 * 59.31662 * 5 4 2 7 7 H 1.09000 * 109.48475 * 60.64930 * 6 5 4 8 8 C 1.52993 * 109.49123 * 180.69158 * 6 5 4 9 9 C 1.53052 * 109.36123 * 300.68168 * 6 5 4 10 10 H 1.09000 * 109.49071 * 298.41105 * 9 6 5 11 11 C 1.52995 * 109.48568 * 178.36345 * 9 6 5 12 12 N 1.46955 * 109.48548 * 120.05017 * 2 1 3 13 13 C 1.46903 * 111.00365 * 303.15417 * 12 2 1 14 14 C 1.50701 * 109.46897 * 295.49512 * 13 12 2 15 15 H 1.07996 * 120.00623 * 4.95393 * 14 13 12 16 16 C 1.37877 * 119.99604 * 184.95385 * 14 13 12 17 17 N 1.31515 * 120.00232 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47376 * 89.99711 * 18 16 14 20 20 H 1.48497 * 109.47475 * 209.99918 * 18 16 14 21 21 H 1.48499 * 109.47092 * 330.00255 * 18 16 14 22 22 H 1.08995 * 109.47399 * 187.28686 * 1 2 3 23 23 H 1.09003 * 109.46914 * 307.28893 * 1 2 3 24 24 H 1.09004 * 109.47062 * 67.28375 * 1 2 3 25 25 H 1.08996 * 109.49414 * 61.66166 * 4 2 1 26 26 H 1.09007 * 109.48750 * 301.59681 * 4 2 1 27 27 H 1.00901 * 111.00079 * 183.18895 * 5 4 2 28 28 H 1.09007 * 109.47109 * 59.99726 * 8 6 5 29 29 H 1.09000 * 109.47280 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47311 * 300.00353 * 8 6 5 31 31 H 1.09004 * 109.47087 * 60.00674 * 11 9 6 32 32 H 1.08999 * 109.47379 * 180.02562 * 11 9 6 33 33 H 1.08999 * 109.47969 * 300.00102 * 11 9 6 34 34 H 1.09004 * 109.46678 * 55.49032 * 13 12 2 35 35 H 1.09000 * 109.47237 * 175.49615 * 13 12 2 36 36 H 0.97000 * 120.00024 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7554 -1.2263 6 6 4.0000 -1.4491 -0.0271 7 1 3.6359 -2.4765 -0.0271 8 6 5.5299 -1.4496 -0.0274 9 6 3.4893 -0.7264 1.2216 10 1 3.8758 0.2927 1.2356 11 6 3.9642 -1.4698 2.4716 12 7 2.0202 -0.6937 1.1992 13 6 1.4888 -0.0738 2.4203 14 6 2.0158 1.3330 2.5397 15 1 2.6137 1.7550 1.7455 16 6 1.7345 2.0815 3.6630 17 7 1.0059 1.5680 4.6299 18 14 2.3884 3.8251 3.8114 19 1 1.4021 4.7743 3.2356 20 1 2.6108 4.1502 5.2431 21 1 3.6720 3.9369 3.0731 22 1 -0.3634 -1.0193 0.1303 23 1 -0.3633 0.6226 0.8176 24 1 -0.3633 0.3969 -0.9480 25 1 1.7022 -0.1931 -2.1393 26 1 1.6544 -1.7419 -1.2625 27 1 3.8747 -1.1812 -2.0650 28 1 5.8936 -0.4220 -0.0267 29 1 5.8932 -1.9639 0.8624 30 1 5.8929 -1.9629 -0.9178 31 1 5.0539 -1.4955 2.4870 32 1 3.6001 -0.9552 3.3608 33 1 3.5769 -2.4885 2.4578 34 1 0.4000 -0.0510 2.3720 35 1 1.8020 -0.6540 3.2883 36 1 0.8078 2.0947 5.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401405183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -21.478122 kcal Electronic energy + Delta-G solvation = -15397.414017 eV Core-core repulsion = 13108.169730 eV Total energy + Delta-G solvation = -2289.244287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55345 -36.35250 -34.95583 -34.22064 -30.44539 -29.63356 -28.16491 -25.94818 -25.32588 -22.63759 -21.49880 -20.47541 -18.17373 -17.02857 -16.85448 -16.56402 -16.18531 -15.39680 -14.99326 -14.48145 -14.15519 -13.86140 -13.52572 -13.33801 -13.20973 -12.88378 -12.62800 -12.55580 -12.43914 -12.37998 -12.14079 -11.95195 -11.78509 -11.52232 -11.40867 -10.95737 -10.54801 -9.35851 -8.95500 -8.12674 -6.30752 1.33771 1.34618 1.45091 2.37159 3.11130 3.29321 3.32426 3.96934 4.09312 4.26642 4.42342 4.45037 4.50256 4.66188 4.73199 4.79200 4.82617 4.87040 4.93781 5.04934 5.09091 5.28978 5.30573 5.33400 5.38253 5.42707 5.48284 5.51370 5.81819 6.09435 6.12694 6.31869 6.64057 6.66160 6.91238 7.39473 8.88666 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030252 B = 0.011116 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.327070 B = 2518.345267 C = 2827.211721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.083 3.917 3 H 0.016 0.984 4 C 0.075 3.925 5 N -0.695 5.695 6 C 0.095 3.905 7 H 0.041 0.959 8 C -0.137 4.137 9 C 0.095 3.905 10 H 0.017 0.983 11 C -0.133 4.133 12 N -0.535 5.535 13 C 0.198 3.802 14 C -0.544 4.544 15 H 0.045 0.955 16 C 0.015 3.985 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.273 1.273 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.353 0.647 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -5.856 -10.668 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 H 0.034 0.966 4 C -0.055 4.055 5 N -0.328 5.328 6 C -0.015 4.015 7 H 0.059 0.941 8 C -0.195 4.195 9 C -0.014 4.014 10 H 0.035 0.965 11 C -0.191 4.191 12 N -0.260 5.260 13 C 0.071 3.929 14 C -0.583 4.583 15 H 0.063 0.937 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.197 1.197 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.057 0.943 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.031 0.969 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.076 -5.693 -10.249 12.776 hybrid contribution 0.043 1.124 0.529 1.243 sum 5.119 -4.569 -9.721 11.898 Atomic orbital electron populations 1.21682 0.94176 1.01572 1.01419 1.21517 0.95401 0.95195 0.90497 0.96565 1.21966 0.87565 0.98978 0.96980 1.60431 1.08574 1.58714 1.05072 1.21527 0.95997 0.94754 0.89261 0.94071 1.21802 0.92642 1.02157 1.02913 1.21460 0.88072 0.96958 0.94930 0.96539 1.21764 1.00837 0.99742 0.96752 1.62711 1.07952 1.52411 1.02891 1.19474 0.94190 0.91405 0.87791 1.21869 1.32518 1.00777 1.03128 0.93674 1.25702 0.95359 1.01916 0.95481 1.70051 1.39397 1.38524 1.08488 0.85695 0.78827 0.80661 0.77365 1.20019 1.20466 1.19741 0.92298 0.94699 0.90484 0.89016 0.94341 0.82779 0.93147 0.91033 0.90597 0.90673 0.94688 0.92338 0.97254 0.96944 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.62 71.98 0.62 -4.18 16 2 C 0.08 3.31 2.26 44.92 0.10 3.42 16 3 H 0.02 0.76 6.76 -2.39 -0.02 0.75 16 4 C 0.07 2.28 6.00 86.31 0.52 2.80 16 5 N -0.69 -20.40 6.55 -491.15 -3.21 -23.61 16 6 C 0.09 2.94 2.70 44.92 0.12 3.06 16 7 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.14 -3.40 9.15 71.98 0.66 -2.74 16 9 C 0.10 3.84 1.69 44.92 0.08 3.91 16 10 H 0.02 0.79 6.63 -2.39 -0.02 0.78 16 11 C -0.13 -5.06 8.54 71.98 0.61 -4.45 16 12 N -0.54 -23.70 4.55 -849.92 -3.87 -27.56 16 13 C 0.20 10.58 4.31 85.56 0.37 10.95 16 14 C -0.54 -30.98 7.66 25.60 0.20 -30.78 16 15 H 0.05 2.63 5.82 -2.91 -0.02 2.62 16 16 C 0.01 0.84 5.46 84.65 0.46 1.30 16 17 N -0.92 -55.68 13.29 21.45 0.28 -55.39 16 18 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 19 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.03 1.50 6.69 -2.39 -0.02 1.48 16 24 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.35 7.94 8.83 -89.69 -0.79 7.15 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.64 6.48 -2.39 -0.02 1.63 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 2.37 6.48 -2.38 -0.02 2.36 16 32 H 0.03 1.58 6.38 -2.39 -0.02 1.56 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.01 0.54 6.17 -2.38 -0.01 0.52 16 35 H 0.01 0.72 6.29 -2.39 -0.02 0.71 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -63.96 271.59 -0.77 -64.73 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.26 Total: 11.25 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.74 Total: -16.71 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -6.80 Total: -106.57 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -63.96 -0.77 -64.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401405183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.254 kcal (2) G-P(sol) polarization free energy of solvation -63.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds