Wall clock time and date at job start Mon Mar 30 2020 02:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.53623 * 2 1 4 4 C 1.53038 * 109.50769 * 120.10169 * 2 1 3 5 5 N 1.46849 * 109.52117 * 60.75657 * 4 2 1 6 6 C 1.46840 * 111.19690 * 61.74952 * 5 4 2 7 7 C 1.53038 * 109.52233 * 298.25339 * 6 5 4 8 8 H 1.08997 * 109.53567 * 299.21837 * 7 6 5 9 9 N 1.46901 * 109.50651 * 179.12129 * 7 6 5 10 10 C 1.46903 * 111.00086 * 306.24533 * 9 7 6 11 11 C 1.46899 * 110.99992 * 70.19414 * 9 7 6 12 12 C 1.50702 * 109.47509 * 169.99976 * 11 9 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.53118 * 109.27907 * 59.18228 * 7 6 5 21 21 H 1.09000 * 109.47008 * 180.10171 * 1 2 3 22 22 H 1.09002 * 109.46426 * 300.09529 * 1 2 3 23 23 H 1.08992 * 109.47336 * 60.09419 * 1 2 3 24 24 H 1.08996 * 109.46529 * 180.77489 * 4 2 1 25 25 H 1.09003 * 109.45987 * 300.74465 * 4 2 1 26 26 H 1.00900 * 111.00170 * 297.64672 * 5 4 2 27 27 H 1.09007 * 109.46464 * 178.23766 * 6 5 4 28 28 H 1.09000 * 109.46794 * 58.26667 * 6 5 4 29 29 H 1.08996 * 109.47083 * 183.94979 * 10 9 7 30 30 H 1.09001 * 109.47066 * 303.95238 * 10 9 7 31 31 H 1.09001 * 109.47134 * 63.94704 * 10 9 7 32 32 H 1.09009 * 109.47165 * 50.00396 * 11 9 7 33 33 H 1.08998 * 109.47687 * 290.00848 * 11 9 7 34 34 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 35 35 H 1.08995 * 109.52555 * 62.24766 * 20 7 6 36 36 H 1.09001 * 109.52537 * 182.38147 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 1.5676 -2.1135 1.2378 6 6 2.0846 -2.8420 0.0724 7 6 1.5749 -2.1818 -1.2108 8 1 0.4857 -2.2161 -1.2305 9 7 2.1094 -2.8981 -2.3767 10 6 3.5734 -2.9979 -2.3076 11 6 1.4966 -4.2271 -2.5043 12 6 1.8778 -4.8307 -3.8315 13 1 2.5122 -4.2820 -4.5119 14 6 1.4167 -6.0832 -4.1771 15 7 0.6446 -6.7515 -3.3483 16 14 1.8831 -6.8282 -5.8254 17 1 1.2588 -8.1691 -5.9570 18 1 1.4012 -5.9483 -6.9204 19 1 3.3599 -6.9592 -5.9094 20 6 2.0412 -0.7238 -1.2488 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3632 0.5153 0.8892 23 1 -0.3633 0.5123 -0.8907 24 1 3.1309 -0.7111 1.2543 25 1 1.6671 -0.2190 2.1389 26 1 0.5599 -2.1525 1.2708 27 1 1.7423 -3.8762 0.1093 28 1 3.1743 -2.8196 0.0841 29 1 3.9486 -3.4700 -3.2155 30 1 4.0015 -1.9999 -2.2134 31 1 3.8563 -3.5977 -1.4425 32 1 0.4121 -4.1344 -2.4455 33 1 1.8505 -4.8694 -1.6980 34 1 0.4028 -6.3648 -2.4922 35 1 3.1304 -0.6901 -1.2690 36 1 1.6450 -0.2378 -2.1404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401944836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:03 Heat of formation + Delta-G solvation = -6.987952 kcal Electronic energy + Delta-G solvation = -15032.996458 eV Core-core repulsion = 12744.380512 eV Total energy + Delta-G solvation = -2288.615946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63955 -36.01477 -32.80889 -32.41791 -29.43122 -27.13942 -26.53230 -24.88009 -23.41301 -22.36401 -20.25248 -18.69939 -16.74714 -16.04480 -15.17875 -15.16455 -14.42368 -13.78005 -13.71923 -13.54465 -13.36739 -12.70420 -12.43023 -11.82054 -11.57837 -11.55178 -11.33439 -11.19892 -10.99043 -10.80678 -10.76933 -10.48805 -10.34044 -10.08552 -9.78798 -8.73105 -8.50804 -8.33443 -7.11261 -6.36166 -4.04955 3.44738 3.47162 3.65718 4.36973 4.53893 4.77426 4.85206 4.99010 5.11324 5.35821 5.39526 5.42980 5.52215 5.62839 5.69426 5.74905 5.89639 5.98478 6.02922 6.14116 6.16551 6.23351 6.27467 6.40814 6.57961 6.68990 6.98163 7.10419 7.12269 7.48172 7.80642 7.99213 8.33773 8.59066 8.87785 9.65655 11.02810 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054765 B = 0.007235 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.151913 B = 3868.970648 C = 3945.597650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 H 0.071 0.929 4 C 0.062 3.938 5 N -0.684 5.684 6 C 0.025 3.975 7 C 0.049 3.951 8 H 0.073 0.927 9 N -0.526 5.526 10 C 0.034 3.966 11 C 0.183 3.817 12 C -0.589 4.589 13 H 0.056 0.944 14 C 0.013 3.987 15 N -0.914 5.914 16 Si 1.072 2.928 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.105 4.105 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.338 0.662 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.016 0.984 33 H -0.017 1.017 34 H 0.266 0.734 35 H 0.061 0.939 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 11.863 7.008 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 H 0.089 0.911 4 C -0.068 4.068 5 N -0.313 5.313 6 C -0.106 4.106 7 C -0.062 4.062 8 H 0.092 0.908 9 N -0.250 5.250 10 C -0.114 4.114 11 C 0.058 3.942 12 C -0.627 4.627 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.551 5.551 16 Si 0.900 3.100 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.156 0.844 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.000 1.000 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.300 10.538 6.049 12.366 hybrid contribution -0.160 1.310 0.932 1.616 sum 2.139 11.848 6.982 13.917 Atomic orbital electron populations 1.21871 0.95295 1.01948 1.01554 1.21850 0.96312 0.99964 0.96905 0.91074 1.22034 1.00232 0.88366 0.96191 1.60680 1.15302 1.13163 1.42159 1.22786 1.00770 0.98289 0.88789 1.22424 0.99599 0.93919 0.90230 0.90848 1.62190 1.04903 1.21593 1.36270 1.22266 0.89196 0.98973 1.00983 1.19829 0.93995 0.83553 0.96860 1.21981 1.34364 1.03683 1.02703 0.92547 1.25852 0.94445 0.94287 1.04418 1.70801 1.34091 1.40224 1.09939 0.83492 0.75940 0.76125 0.74396 1.20826 1.21403 1.21494 1.21634 1.00560 0.95093 0.96968 0.92525 0.92906 0.92444 0.91276 0.91143 0.84399 0.90700 0.90873 0.90856 0.93463 0.96609 0.96556 0.99956 0.92374 0.92031 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.58 37.16 0.32 -1.39 16 2 C -0.13 -1.55 3.21 -90.54 -0.29 -1.84 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.06 0.75 6.06 -3.83 -0.02 0.72 16 5 N -0.68 -9.71 6.80 -113.82 -0.77 -10.49 16 6 C 0.02 0.41 5.10 -3.84 -0.02 0.39 16 7 C 0.05 0.87 1.98 -67.63 -0.13 0.74 16 8 H 0.07 1.37 6.37 -51.93 -0.33 1.04 16 9 N -0.53 -11.46 4.70 -236.23 -1.11 -12.57 16 10 C 0.03 0.68 8.47 60.07 0.51 1.19 16 11 C 0.18 4.77 3.61 -4.98 -0.02 4.75 16 12 C -0.59 -16.90 8.52 -34.44 -0.29 -17.20 16 13 H 0.06 1.62 7.10 -52.49 -0.37 1.25 16 14 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 15 N -0.91 -28.08 13.65 55.43 0.76 -27.33 16 16 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.10 -1.55 4.77 -26.61 -0.13 -1.68 16 21 H 0.06 0.71 5.12 -51.93 -0.27 0.44 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.34 4.54 7.14 -39.29 -0.28 4.26 16 27 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 28 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 29 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 30 H 0.05 0.81 6.26 -51.93 -0.33 0.48 16 31 H 0.02 0.31 6.44 -51.93 -0.33 -0.03 16 32 H 0.02 0.45 7.80 -51.92 -0.41 0.05 16 33 H -0.02 -0.47 6.95 -51.93 -0.36 -0.83 16 34 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 35 H 0.06 0.91 6.38 -51.93 -0.33 0.58 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -30.18 267.96 -8.03 -38.21 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.68 Total: 1.69 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.17 Total: -14.01 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.13 Total: -50.39 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.18 -8.03 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401944836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.218 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds