Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.53623 * 2 1 4 4 C 1.53038 * 109.50769 * 120.10169 * 2 1 3 5 5 N 1.46849 * 109.52117 * 60.75657 * 4 2 1 6 6 C 1.46840 * 111.19690 * 61.74952 * 5 4 2 7 7 C 1.53038 * 109.52233 * 298.25339 * 6 5 4 8 8 H 1.08997 * 109.53567 * 299.21837 * 7 6 5 9 9 N 1.46901 * 109.50651 * 179.12129 * 7 6 5 10 10 C 1.46903 * 111.00086 * 306.24533 * 9 7 6 11 11 C 1.46899 * 110.99992 * 70.19414 * 9 7 6 12 12 C 1.50702 * 109.47509 * 169.99976 * 11 9 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.53118 * 109.27907 * 59.18228 * 7 6 5 21 21 H 1.09000 * 109.47008 * 180.10171 * 1 2 3 22 22 H 1.09002 * 109.46426 * 300.09529 * 1 2 3 23 23 H 1.08992 * 109.47336 * 60.09419 * 1 2 3 24 24 H 1.08996 * 109.46529 * 180.77489 * 4 2 1 25 25 H 1.09003 * 109.45987 * 300.74465 * 4 2 1 26 26 H 1.00900 * 111.00170 * 297.64672 * 5 4 2 27 27 H 1.09007 * 109.46464 * 178.23766 * 6 5 4 28 28 H 1.09000 * 109.46794 * 58.26667 * 6 5 4 29 29 H 1.08996 * 109.47083 * 183.94979 * 10 9 7 30 30 H 1.09001 * 109.47066 * 303.95238 * 10 9 7 31 31 H 1.09001 * 109.47134 * 63.94704 * 10 9 7 32 32 H 1.09009 * 109.47165 * 50.00396 * 11 9 7 33 33 H 1.08998 * 109.47687 * 290.00848 * 11 9 7 34 34 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 35 35 H 1.08995 * 109.52555 * 62.24766 * 20 7 6 36 36 H 1.09001 * 109.52537 * 182.38147 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 1.5676 -2.1135 1.2378 6 6 2.0846 -2.8420 0.0724 7 6 1.5749 -2.1818 -1.2108 8 1 0.4857 -2.2161 -1.2305 9 7 2.1094 -2.8981 -2.3767 10 6 3.5734 -2.9979 -2.3076 11 6 1.4966 -4.2271 -2.5043 12 6 1.8778 -4.8307 -3.8315 13 1 2.5122 -4.2820 -4.5119 14 6 1.4167 -6.0832 -4.1771 15 7 0.6446 -6.7515 -3.3483 16 14 1.8831 -6.8282 -5.8254 17 1 1.2588 -8.1691 -5.9570 18 1 1.4012 -5.9483 -6.9204 19 1 3.3599 -6.9592 -5.9094 20 6 2.0412 -0.7238 -1.2488 21 1 -0.3633 -1.0277 0.0018 22 1 -0.3632 0.5153 0.8892 23 1 -0.3633 0.5123 -0.8907 24 1 3.1309 -0.7111 1.2543 25 1 1.6671 -0.2190 2.1389 26 1 0.5599 -2.1525 1.2708 27 1 1.7423 -3.8762 0.1093 28 1 3.1743 -2.8196 0.0841 29 1 3.9486 -3.4700 -3.2155 30 1 4.0015 -1.9999 -2.2134 31 1 3.8563 -3.5977 -1.4425 32 1 0.4121 -4.1344 -2.4455 33 1 1.8505 -4.8694 -1.6980 34 1 0.4028 -6.3648 -2.4922 35 1 3.1304 -0.6901 -1.2690 36 1 1.6450 -0.2378 -2.1404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401944836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -29.384745 kcal Electronic energy + Delta-G solvation = -15033.967656 eV Core-core repulsion = 12744.380512 eV Total energy + Delta-G solvation = -2289.587144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95621 -37.61276 -34.93168 -33.54835 -30.94922 -28.81161 -27.79211 -26.70657 -24.66098 -24.19954 -21.74732 -19.91787 -18.90154 -17.41139 -16.65095 -16.51289 -15.77221 -15.59966 -15.08264 -15.00797 -14.92109 -14.14014 -13.91934 -13.50866 -13.20029 -12.97761 -12.73724 -12.68880 -12.39879 -12.39632 -12.17190 -12.05931 -11.93220 -11.55100 -11.17472 -10.77745 -10.59282 -9.86662 -8.79919 -8.65528 -6.40923 1.52080 1.60759 1.80438 2.54505 3.04838 3.13891 3.43015 3.64038 3.90263 3.96768 4.03320 4.21144 4.32733 4.37475 4.43895 4.59308 4.64092 4.72310 4.77712 4.84779 4.90914 4.94659 5.03899 5.07186 5.15083 5.17867 5.25310 5.37107 5.74991 5.91291 5.99669 6.32214 6.39085 6.41079 6.63563 7.39840 8.68381 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054765 B = 0.007235 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.151913 B = 3868.970648 C = 3945.597650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 H 0.097 0.903 4 C 0.061 3.939 5 N -0.685 5.685 6 C 0.038 3.962 7 C 0.050 3.950 8 H 0.058 0.942 9 N -0.538 5.538 10 C 0.039 3.961 11 C 0.199 3.801 12 C -0.602 4.602 13 H 0.054 0.946 14 C -0.038 4.038 15 N -0.937 5.937 16 Si 1.122 2.878 17 H -0.283 1.283 18 H -0.270 1.270 19 H -0.268 1.268 20 C -0.098 4.098 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.342 0.658 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.014 0.986 32 H -0.009 1.009 33 H -0.039 1.039 34 H 0.252 0.748 35 H 0.066 0.934 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 13.663 7.127 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 H 0.115 0.885 4 C -0.068 4.068 5 N -0.314 5.314 6 C -0.093 4.093 7 C -0.060 4.060 8 H 0.076 0.924 9 N -0.261 5.261 10 C -0.109 4.109 11 C 0.072 3.928 12 C -0.640 4.640 13 H 0.073 0.927 14 C -0.235 4.235 15 N -0.574 5.574 16 Si 0.942 3.058 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.193 1.193 20 C -0.136 4.136 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.161 0.839 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.033 0.967 32 H 0.009 0.991 33 H -0.021 1.021 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.172 12.379 6.197 14.202 hybrid contribution -0.447 0.821 0.964 1.343 sum 2.726 13.200 7.160 15.263 Atomic orbital electron populations 1.21867 0.94985 1.01140 1.02632 1.21819 0.96492 1.00787 0.95028 0.88463 1.22167 1.00524 0.86835 0.97292 1.60672 1.15711 1.14780 1.40244 1.22493 1.00470 0.96872 0.89466 1.22498 0.98718 0.95626 0.89198 0.92375 1.62115 1.06012 1.19016 1.38963 1.22241 0.87933 1.00789 0.99916 1.19471 0.92544 0.85574 0.95213 1.22328 1.34080 1.04043 1.03588 0.92729 1.27450 0.93604 0.95096 1.07366 1.70934 1.35775 1.40731 1.09995 0.82879 0.76876 0.75504 0.70512 1.20824 1.19560 1.19320 1.21599 1.00808 0.92665 0.98508 0.94282 0.90643 0.92606 0.90982 0.88565 0.83914 0.94015 0.90925 0.92794 0.90052 0.96730 0.99147 1.02133 0.93867 0.91509 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.58 71.98 0.62 -2.44 16 2 C -0.12 -2.51 3.21 -10.74 -0.03 -2.54 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.06 1.28 6.06 86.33 0.52 1.80 16 5 N -0.68 -18.56 6.80 -514.01 -3.49 -22.05 16 6 C 0.04 1.30 5.10 86.33 0.44 1.74 16 7 C 0.05 1.78 1.98 44.97 0.09 1.87 16 8 H 0.06 2.24 6.37 -2.39 -0.02 2.22 16 9 N -0.54 -23.76 4.70 -901.29 -4.24 -28.00 16 10 C 0.04 1.54 8.47 127.69 1.08 2.63 16 11 C 0.20 10.78 3.61 85.56 0.31 11.09 16 12 C -0.60 -35.28 8.52 25.60 0.22 -35.06 16 13 H 0.05 3.16 7.10 -2.91 -0.02 3.14 16 14 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 15 N -0.94 -59.04 13.65 21.45 0.29 -58.75 16 16 Si 1.12 51.14 29.90 68.60 2.05 53.19 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 C -0.10 -2.72 4.77 30.68 0.15 -2.57 16 21 H 0.04 0.93 5.12 -2.39 -0.01 0.92 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.34 8.89 7.14 -89.69 -0.64 8.24 16 27 H 0.04 1.67 6.96 -2.38 -0.02 1.66 16 28 H 0.07 2.46 6.36 -2.39 -0.02 2.44 16 29 H 0.05 2.31 6.86 -2.39 -0.02 2.29 16 30 H 0.08 2.62 6.26 -2.39 -0.01 2.61 16 31 H 0.01 0.56 6.44 -2.39 -0.02 0.55 16 32 H -0.01 -0.56 7.80 -2.38 -0.02 -0.57 16 33 H -0.04 -2.24 6.95 -2.39 -0.02 -2.26 16 34 H 0.25 16.16 7.22 -92.70 -0.67 15.49 16 35 H 0.07 1.79 6.38 -2.39 -0.02 1.77 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.07 267.96 -1.02 -67.09 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.52 Total: 13.78 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.85 Total: -25.26 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -7.44 Total: -108.80 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -66.07 -1.02 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401944836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.704 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds