Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53386 * 2 1 4 4 C 1.53166 * 109.58613 * 239.86440 * 2 1 3 5 5 N 1.46845 * 109.55463 * 180.90842 * 4 2 1 6 6 C 1.46848 * 111.19518 * 61.74755 * 5 4 2 7 7 C 1.53037 * 109.52381 * 298.25146 * 6 5 4 8 8 H 1.08997 * 109.53826 * 299.22428 * 7 6 5 9 9 N 1.46900 * 109.50725 * 179.12315 * 7 6 5 10 10 C 1.46898 * 111.00003 * 184.15521 * 9 7 6 11 11 C 1.46904 * 110.99727 * 60.19756 * 9 7 6 12 12 C 1.50698 * 109.46808 * 190.00105 * 11 9 7 13 13 H 1.08005 * 120.00333 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99960 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99722 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00207 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46854 * 59.99881 * 16 14 12 18 18 H 1.48493 * 109.47092 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46907 * 300.00363 * 16 14 12 20 20 C 1.53120 * 109.50184 * 120.09683 * 2 1 3 21 21 H 1.09008 * 109.46892 * 299.90374 * 1 2 3 22 22 H 1.09003 * 109.47443 * 59.90382 * 1 2 3 23 23 H 1.09001 * 109.47737 * 179.90580 * 1 2 3 24 24 H 1.09003 * 109.44926 * 60.88570 * 4 2 1 25 25 H 1.09002 * 109.44150 * 300.92959 * 4 2 1 26 26 H 1.00906 * 111.00175 * 185.84140 * 5 4 2 27 27 H 1.09006 * 109.46097 * 178.23945 * 6 5 4 28 28 H 1.08996 * 109.46046 * 58.26729 * 6 5 4 29 29 H 1.09001 * 109.47250 * 59.99843 * 10 9 7 30 30 H 1.09006 * 109.46675 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47113 * 299.99658 * 10 9 7 32 32 H 1.08997 * 109.47124 * 309.99861 * 11 9 7 33 33 H 1.08995 * 109.47028 * 70.00454 * 11 9 7 34 34 H 0.97000 * 119.99392 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.52427 * 57.68960 * 20 2 1 36 36 H 1.08995 * 109.52208 * 297.56279 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0434 -0.7245 -1.2480 5 7 3.5117 -0.7431 -1.2363 6 6 4.0242 -1.4735 -0.0700 7 6 3.5712 -0.7719 1.2124 8 1 3.9678 0.2432 1.2321 9 7 4.0664 -1.5146 2.3790 10 6 3.5679 -0.9251 3.6288 11 6 5.5339 -1.5810 2.3767 12 6 5.9947 -2.5470 3.4376 13 1 5.2699 -3.0607 4.0518 14 6 7.3416 -2.7751 3.6241 15 7 8.2242 -2.1500 2.8758 16 14 7.9129 -3.9731 4.9386 17 1 7.3566 -5.3206 4.6557 18 1 9.3963 -4.0391 4.9372 19 1 7.4396 -3.5115 6.2684 20 6 2.0412 -0.7238 1.2488 21 1 -0.3633 0.5124 0.8909 22 1 -0.3634 0.5153 -0.8891 23 1 -0.3634 -1.0276 -0.0017 24 1 1.6940 -0.2037 -2.1395 25 1 1.6673 -1.7475 -1.2541 26 1 3.8753 -1.1307 -2.0941 27 1 5.1134 -1.4968 -0.1059 28 1 3.6387 -2.4929 -0.0819 29 1 2.4783 -0.9521 3.6340 30 1 3.9493 -1.4945 4.4765 31 1 3.9061 0.1083 3.7032 32 1 5.8808 -1.9205 1.4008 33 1 5.9426 -0.5920 2.5837 34 1 9.1718 -2.3102 3.0073 35 1 1.6452 -1.7391 1.2691 36 1 1.7147 -0.1876 2.1398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401944838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = -4.937170 kcal Electronic energy + Delta-G solvation = -14786.363227 eV Core-core repulsion = 12497.836210 eV Total energy + Delta-G solvation = -2288.527017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94161 -35.76611 -33.03021 -32.53788 -29.64992 -27.47971 -26.14426 -24.96276 -22.66570 -21.99159 -19.84725 -19.09133 -16.60542 -15.90462 -14.90633 -14.71396 -14.35606 -13.96431 -13.69796 -13.58327 -12.90388 -12.74121 -12.36623 -11.98246 -11.77567 -11.67435 -11.11539 -10.95192 -10.84464 -10.65374 -10.60666 -10.39588 -10.21682 -9.96970 -9.45153 -9.13622 -8.38688 -8.19310 -7.17415 -5.99531 -4.00593 3.35059 3.38942 3.41960 4.33689 4.47301 4.84828 5.04047 5.15269 5.26861 5.36343 5.55027 5.61062 5.64649 5.72834 5.81723 5.96249 6.04489 6.13359 6.16802 6.26434 6.31274 6.33864 6.43958 6.59931 6.73828 6.81174 7.18811 7.40616 7.43033 7.61432 7.84403 8.14324 8.26083 8.61099 9.06861 9.63140 11.11280 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053461 B = 0.007117 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.622283 B = 3933.313268 C = 4261.764077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.074 0.926 4 C 0.064 3.936 5 N -0.693 5.693 6 C 0.065 3.935 7 C 0.089 3.911 8 H 0.035 0.965 9 N -0.539 5.539 10 C 0.038 3.962 11 C 0.189 3.811 12 C -0.507 4.507 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.108 4.108 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.341 0.659 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.009 0.991 32 H 0.035 0.965 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 3.178 -6.006 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.092 0.908 4 C -0.066 4.066 5 N -0.324 5.324 6 C -0.064 4.064 7 C -0.020 4.020 8 H 0.053 0.947 9 N -0.264 5.264 10 C -0.111 4.111 11 C 0.064 3.936 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.158 0.842 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.124 3.318 -5.762 13.828 hybrid contribution 0.619 -0.714 0.499 1.069 sum -11.505 2.604 -5.262 12.917 Atomic orbital electron populations 1.21772 0.95290 1.01619 1.01424 1.21181 0.94680 1.00251 0.94872 0.90774 1.21962 0.88327 0.98355 0.97910 1.60218 1.07537 1.59067 1.05559 1.21999 1.00562 0.94674 0.89185 1.21463 0.93782 0.95501 0.91281 0.94660 1.62123 1.13828 1.50298 1.00145 1.22223 0.98150 0.96716 0.94010 1.19794 0.80065 0.95715 0.97984 1.21146 0.91409 1.24323 1.17705 0.91991 1.24987 0.96737 0.96390 0.96513 1.69954 1.01483 1.42763 1.39665 0.86571 0.77316 0.81570 0.82001 1.20210 1.21369 1.20318 1.21747 0.95649 1.00493 0.96738 0.92612 0.92911 0.92841 0.91468 0.95452 0.84197 0.89827 0.94554 0.93440 0.90810 0.97209 0.94738 0.99245 0.92909 0.91729 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 37.16 0.34 -1.16 16 2 C -0.09 -1.19 2.89 -90.47 -0.26 -1.45 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.06 0.83 5.84 -3.77 -0.02 0.81 16 5 N -0.69 -10.37 6.85 -113.74 -0.78 -11.15 16 6 C 0.06 1.18 5.61 -3.83 -0.02 1.15 16 7 C 0.09 1.70 2.11 -67.63 -0.14 1.56 16 8 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 9 N -0.54 -11.99 4.62 -236.24 -1.09 -13.09 16 10 C 0.04 0.76 8.92 60.06 0.54 1.30 16 11 C 0.19 5.03 4.54 -4.97 -0.02 5.01 16 12 C -0.51 -14.45 8.46 -34.44 -0.29 -14.74 16 13 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.11 -1.69 4.12 -26.61 -0.11 -1.80 16 21 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.34 4.39 8.90 -39.29 -0.35 4.04 16 27 H 0.08 1.70 6.25 -51.93 -0.32 1.37 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.82 6.29 -51.93 -0.33 0.49 16 30 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.96 5.85 -51.93 -0.30 0.66 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 LS Contribution 278.29 15.07 4.19 4.19 Total: -1.00 -29.87 278.29 -8.20 -38.07 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.15 Total: -0.73 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.09 Total: -7.85 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.13 Total: -50.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.87 -8.20 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401944838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.134 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds