Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.53386 * 2 1 4 4 C 1.53166 * 109.58613 * 239.86440 * 2 1 3 5 5 N 1.46845 * 109.55463 * 180.90842 * 4 2 1 6 6 C 1.46848 * 111.19518 * 61.74755 * 5 4 2 7 7 C 1.53037 * 109.52381 * 298.25146 * 6 5 4 8 8 H 1.08997 * 109.53826 * 299.22428 * 7 6 5 9 9 N 1.46900 * 109.50725 * 179.12315 * 7 6 5 10 10 C 1.46898 * 111.00003 * 184.15521 * 9 7 6 11 11 C 1.46904 * 110.99727 * 60.19756 * 9 7 6 12 12 C 1.50698 * 109.46808 * 190.00105 * 11 9 7 13 13 H 1.08005 * 120.00333 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99960 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99722 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00207 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46854 * 59.99881 * 16 14 12 18 18 H 1.48493 * 109.47092 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46907 * 300.00363 * 16 14 12 20 20 C 1.53120 * 109.50184 * 120.09683 * 2 1 3 21 21 H 1.09008 * 109.46892 * 299.90374 * 1 2 3 22 22 H 1.09003 * 109.47443 * 59.90382 * 1 2 3 23 23 H 1.09001 * 109.47737 * 179.90580 * 1 2 3 24 24 H 1.09003 * 109.44926 * 60.88570 * 4 2 1 25 25 H 1.09002 * 109.44150 * 300.92959 * 4 2 1 26 26 H 1.00906 * 111.00175 * 185.84140 * 5 4 2 27 27 H 1.09006 * 109.46097 * 178.23945 * 6 5 4 28 28 H 1.08996 * 109.46046 * 58.26729 * 6 5 4 29 29 H 1.09001 * 109.47250 * 59.99843 * 10 9 7 30 30 H 1.09006 * 109.46675 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47113 * 299.99658 * 10 9 7 32 32 H 1.08997 * 109.47124 * 309.99861 * 11 9 7 33 33 H 1.08995 * 109.47028 * 70.00454 * 11 9 7 34 34 H 0.97000 * 119.99392 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.52427 * 57.68960 * 20 2 1 36 36 H 1.08995 * 109.52208 * 297.56279 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0434 -0.7245 -1.2480 5 7 3.5117 -0.7431 -1.2363 6 6 4.0242 -1.4735 -0.0700 7 6 3.5712 -0.7719 1.2124 8 1 3.9678 0.2432 1.2321 9 7 4.0664 -1.5146 2.3790 10 6 3.5679 -0.9251 3.6288 11 6 5.5339 -1.5810 2.3767 12 6 5.9947 -2.5470 3.4376 13 1 5.2699 -3.0607 4.0518 14 6 7.3416 -2.7751 3.6241 15 7 8.2242 -2.1500 2.8758 16 14 7.9129 -3.9731 4.9386 17 1 7.3566 -5.3206 4.6557 18 1 9.3963 -4.0391 4.9372 19 1 7.4396 -3.5115 6.2684 20 6 2.0412 -0.7238 1.2488 21 1 -0.3633 0.5124 0.8909 22 1 -0.3634 0.5153 -0.8891 23 1 -0.3634 -1.0276 -0.0017 24 1 1.6940 -0.2037 -2.1395 25 1 1.6673 -1.7475 -1.2541 26 1 3.8753 -1.1307 -2.0941 27 1 5.1134 -1.4968 -0.1059 28 1 3.6387 -2.4929 -0.0819 29 1 2.4783 -0.9521 3.6340 30 1 3.9493 -1.4945 4.4765 31 1 3.9061 0.1083 3.7032 32 1 5.8808 -1.9205 1.4008 33 1 5.9426 -0.5920 2.5837 34 1 9.1718 -2.3102 3.0073 35 1 1.6452 -1.7391 1.2691 36 1 1.7147 -0.1876 2.1398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401944838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = -26.924264 kcal Electronic energy + Delta-G solvation = -14787.316659 eV Core-core repulsion = 12497.836210 eV Total energy + Delta-G solvation = -2289.480449 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33627 -37.37607 -34.68228 -34.17510 -31.21200 -29.29946 -27.48959 -26.55673 -24.16130 -23.69093 -21.24211 -20.53122 -18.61066 -17.43376 -16.72808 -16.22328 -15.68566 -15.49792 -15.18778 -15.07382 -14.50238 -14.15086 -13.90980 -13.55871 -13.14230 -12.91153 -12.81532 -12.68311 -12.49988 -12.30135 -12.21802 -11.97431 -11.58760 -11.43716 -11.14011 -11.02319 -10.58108 -9.43143 -9.04179 -8.20255 -6.30705 1.40573 1.44113 1.52123 2.40025 3.02702 3.11869 3.53563 3.80862 3.93386 4.02371 4.17888 4.36880 4.51142 4.59825 4.65056 4.71435 4.75280 4.81364 4.89941 4.91243 5.03176 5.05932 5.14098 5.19050 5.23986 5.31894 5.39549 5.50995 5.64867 5.98987 6.07236 6.32586 6.49683 6.65463 6.85328 7.38776 8.90805 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053461 B = 0.007117 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.622283 B = 3933.313268 C = 4261.764077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.066 0.934 4 C 0.062 3.938 5 N -0.696 5.696 6 C 0.075 3.925 7 C 0.087 3.913 8 H 0.014 0.986 9 N -0.544 5.544 10 C 0.040 3.960 11 C 0.205 3.795 12 C -0.526 4.526 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.971 3.029 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.100 4.100 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.032 0.968 26 H 0.353 0.647 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.005 0.995 32 H 0.014 0.986 33 H -0.047 1.047 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 2.750 -5.952 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.067 4.067 5 N -0.328 5.328 6 C -0.055 4.055 7 C -0.022 4.022 8 H 0.032 0.968 9 N -0.269 5.269 10 C -0.108 4.108 11 C 0.079 3.921 12 C -0.564 4.564 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.138 4.138 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.050 0.950 26 H 0.172 0.828 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.032 0.968 33 H -0.029 1.029 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.036 2.896 -5.720 15.431 hybrid contribution 1.183 -0.527 0.425 1.363 sum -12.854 2.368 -5.296 14.102 Atomic orbital electron populations 1.21713 0.92657 1.02330 1.02685 1.21189 0.96761 0.99294 0.93480 0.91514 1.22104 0.86525 0.99041 0.99018 1.60182 1.09340 1.58405 1.04905 1.21729 0.98660 0.94690 0.90412 1.21581 0.96401 0.93850 0.90379 0.96755 1.62087 1.10965 1.51642 1.02201 1.22241 1.00167 0.95917 0.92481 1.19443 0.82882 0.93296 0.96473 1.21461 0.91960 1.24746 1.18232 0.91858 1.25941 0.96770 0.98175 0.98828 1.70094 1.01886 1.44232 1.41359 0.85414 0.76891 0.79115 0.79055 1.19256 1.20795 1.19209 1.21699 0.92345 1.01024 0.98708 0.92033 0.91077 0.92378 0.88767 0.94953 0.82830 0.93099 0.95140 0.89840 0.92305 0.97618 0.96803 1.02911 0.92681 0.91761 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.20 71.98 0.66 -1.70 16 2 C -0.09 -2.09 2.89 -10.70 -0.03 -2.13 16 3 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.06 1.45 5.84 86.37 0.50 1.95 16 5 N -0.70 -20.31 6.85 -513.77 -3.52 -23.83 16 6 C 0.07 2.78 5.61 86.33 0.48 3.27 16 7 C 0.09 3.36 2.11 44.97 0.09 3.45 16 8 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 9 N -0.54 -24.72 4.62 -901.31 -4.17 -28.88 16 10 C 0.04 1.62 8.92 127.69 1.14 2.76 16 11 C 0.21 11.41 4.54 85.56 0.39 11.80 16 12 C -0.53 -30.61 8.46 25.60 0.22 -30.39 16 13 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 14 C 0.00 0.04 5.46 84.65 0.46 0.51 16 15 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 16 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C -0.10 -2.96 4.12 30.68 0.13 -2.84 16 21 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.35 8.78 8.90 -89.69 -0.80 7.98 16 27 H 0.05 2.20 6.25 -2.38 -0.01 2.18 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 2.74 6.29 -2.39 -0.02 2.72 16 30 H 0.06 2.52 6.76 -2.38 -0.02 2.51 16 31 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.01 0.83 5.85 -2.39 -0.01 0.81 16 33 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.92 6.50 -2.39 -0.02 1.90 16 Total: -1.00 -65.45 278.29 -1.08 -66.53 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.24 Total: 9.81 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.05 Total: -13.33 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -7.40 Total: -109.97 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.45 -1.08 -66.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401944838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.606 kcal (2) G-P(sol) polarization free energy of solvation -65.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds