Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.50152 * 2 1 4 4 C 1.53037 * 109.50708 * 120.07943 * 2 1 3 5 5 N 1.46845 * 109.52027 * 179.16115 * 4 2 1 6 6 C 1.46848 * 111.19932 * 298.25720 * 5 4 2 7 7 C 1.53035 * 109.52315 * 61.74534 * 6 5 4 8 8 H 1.09002 * 109.50787 * 60.80011 * 7 6 5 9 9 N 1.46898 * 109.50650 * 180.88232 * 7 6 5 10 10 C 1.46901 * 111.00443 * 176.04681 * 9 7 6 11 11 C 1.46906 * 110.99820 * 299.99993 * 9 7 6 12 12 C 1.50696 * 109.47351 * 169.99890 * 11 9 7 13 13 H 1.08007 * 119.99780 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00506 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00248 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99357 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46811 * 90.00524 * 16 14 12 18 18 H 1.48502 * 109.46643 * 209.99901 * 16 14 12 19 19 H 1.48499 * 109.47300 * 329.99977 * 16 14 12 20 20 C 1.53114 * 109.53080 * 239.90728 * 2 1 3 21 21 H 1.09002 * 109.47065 * 299.91425 * 1 2 3 22 22 H 1.08997 * 109.47721 * 59.91905 * 1 2 3 23 23 H 1.09003 * 109.47042 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.45783 * 59.14783 * 4 2 1 25 25 H 1.08999 * 109.46285 * 299.17340 * 4 2 1 26 26 H 1.00904 * 110.99859 * 174.16701 * 5 4 2 27 27 H 1.09005 * 109.46240 * 301.72927 * 6 5 4 28 28 H 1.09002 * 109.45904 * 181.75512 * 6 5 4 29 29 H 1.09002 * 109.47401 * 183.95136 * 10 9 7 30 30 H 1.09001 * 109.46874 * 63.95149 * 10 9 7 31 31 H 1.09004 * 109.46970 * 303.95282 * 10 9 7 32 32 H 1.08997 * 109.46995 * 289.99871 * 11 9 7 33 33 H 1.09001 * 109.46848 * 49.99877 * 11 9 7 34 34 H 0.96999 * 119.99895 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.52903 * 62.47943 * 20 2 1 36 36 H 1.08997 * 109.52538 * 302.27983 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7230 1.2483 5 7 3.5094 -0.7407 1.2384 6 6 4.0238 -1.4714 0.0732 7 6 3.5720 -0.7707 -1.2101 8 1 3.9685 0.2444 -1.2296 9 7 4.0691 -1.5138 -2.3758 10 6 3.5757 -0.9224 -3.6267 11 6 5.5365 -1.5833 -2.3691 12 6 5.9985 -2.5496 -3.4292 13 1 5.2744 -3.0607 -4.0465 14 6 7.3454 -2.7813 -3.6111 15 7 7.7485 -3.6242 -4.5366 16 14 8.5976 -1.8967 -2.5440 17 1 8.8753 -2.7076 -1.3313 18 1 9.8550 -1.7064 -3.3108 19 1 8.0581 -0.5730 -2.1416 20 6 2.0419 -0.7235 -1.2485 21 1 -0.3633 0.5125 0.8908 22 1 -0.3634 0.5151 -0.8892 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6655 -1.7462 1.2545 25 1 1.6901 -0.2019 2.1390 26 1 3.8720 -1.1277 2.0968 27 1 3.6390 -2.4912 0.0850 28 1 5.1130 -1.4938 0.1105 29 1 3.9006 -1.5322 -4.4698 30 1 3.9739 0.0867 -3.7333 31 1 2.4866 -0.8829 -3.6052 32 1 5.9479 -0.5950 -2.5742 33 1 5.8796 -1.9242 -1.3923 34 1 8.6961 -3.7874 -4.6643 35 1 1.7163 -0.1870 -2.1398 36 1 1.6466 -1.7391 -1.2688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401944839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -23.325942 kcal Electronic energy + Delta-G solvation = -14845.787566 eV Core-core repulsion = 12556.463152 eV Total energy + Delta-G solvation = -2289.324414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37500 -37.43828 -34.66677 -34.18124 -31.43009 -29.70706 -27.54636 -26.52139 -24.03459 -23.48030 -21.21392 -20.54697 -19.05541 -17.47591 -16.61855 -16.24145 -15.72130 -15.67133 -15.14571 -14.97481 -14.58933 -14.42885 -14.09030 -13.64300 -13.20871 -12.97939 -12.85496 -12.70599 -12.45575 -12.30320 -12.04325 -11.91091 -11.58750 -11.48446 -11.22707 -11.06331 -10.76638 -9.43506 -9.05423 -8.29830 -6.32751 1.32434 1.34018 1.45036 2.32625 2.96565 3.03291 3.49600 3.78348 3.93050 4.01502 4.16762 4.36309 4.45037 4.58521 4.63646 4.66993 4.72865 4.81754 4.86221 4.88363 4.90545 5.00874 5.07270 5.11453 5.15176 5.29169 5.36744 5.49633 5.54587 5.89615 6.07645 6.33525 6.50722 6.65655 6.73244 7.30714 8.86753 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.008013 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.901401 B = 3493.620394 C = 3897.209498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.070 0.930 4 C 0.062 3.938 5 N -0.693 5.693 6 C 0.069 3.931 7 C 0.085 3.915 8 H 0.027 0.973 9 N -0.544 5.544 10 C 0.041 3.959 11 C 0.170 3.830 12 C -0.516 4.516 13 H 0.039 0.961 14 C 0.010 3.990 15 N -0.947 5.947 16 Si 0.943 3.057 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.256 1.256 20 C -0.103 4.103 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.354 0.646 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.014 0.986 31 H 0.083 0.917 32 H -0.019 1.019 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.068 0.932 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 8.432 12.290 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.067 4.067 5 N -0.326 5.326 6 C -0.061 4.061 7 C -0.024 4.024 8 H 0.045 0.955 9 N -0.268 5.268 10 C -0.107 4.107 11 C 0.043 3.957 12 C -0.554 4.554 13 H 0.057 0.943 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.767 3.233 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.180 1.180 20 C -0.141 4.141 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.173 0.827 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.102 0.898 32 H -0.002 1.002 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.269 8.484 11.948 19.112 hybrid contribution 1.186 -0.219 -0.012 1.206 sum -11.083 8.265 11.935 18.265 Atomic orbital electron populations 1.21724 0.92964 1.02206 1.02663 1.21156 0.96583 0.99453 0.93418 0.91144 1.22073 0.86732 0.98964 0.98967 1.60199 1.09142 1.58271 1.04967 1.21809 0.99131 0.94815 0.90314 1.21629 0.96372 0.94328 0.90062 0.95536 1.61881 1.10340 1.52197 1.02404 1.22222 1.00162 0.96248 0.92094 1.19989 0.85308 0.93987 0.96384 1.21265 0.92248 1.24235 1.17692 0.94284 1.25809 1.00552 0.95771 0.96630 1.70041 1.16265 1.37348 1.35092 0.85769 0.78297 0.80026 0.79229 1.18715 1.20484 1.17970 1.21722 0.92658 1.00932 0.98767 0.91067 0.92106 0.92606 0.95151 0.88777 0.82695 0.95154 0.92100 0.93252 0.96721 0.89818 1.00161 0.94935 0.92381 0.91333 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.20 71.98 0.66 -1.60 16 2 C -0.09 -1.90 2.88 -10.74 -0.03 -1.93 16 3 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 4 C 0.06 1.30 5.83 86.33 0.50 1.81 16 5 N -0.69 -17.72 6.85 -514.01 -3.52 -21.24 16 6 C 0.07 2.27 5.60 86.32 0.48 2.75 16 7 C 0.08 2.97 2.11 44.97 0.09 3.07 16 8 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 9 N -0.54 -23.41 4.62 -901.27 -4.17 -27.57 16 10 C 0.04 1.62 8.99 127.69 1.15 2.77 16 11 C 0.17 8.49 3.60 85.55 0.31 8.80 16 12 C -0.52 -30.59 9.07 25.60 0.23 -30.36 16 13 H 0.04 2.57 7.35 -2.91 -0.02 2.55 16 14 C 0.01 0.58 5.47 84.66 0.46 1.04 16 15 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 16 Si 0.94 44.96 27.47 68.60 1.88 46.84 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 20 C -0.10 -2.87 4.14 30.68 0.13 -2.74 16 21 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.35 7.51 8.90 -89.69 -0.80 6.71 16 27 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 2.19 6.25 -2.39 -0.01 2.18 16 29 H 0.05 2.21 6.86 -2.39 -0.02 2.20 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 2.72 6.07 -2.38 -0.01 2.71 16 32 H -0.02 -0.98 7.18 -2.39 -0.02 -1.00 16 33 H 0.03 1.59 5.27 -2.39 -0.01 1.58 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.07 1.82 6.42 -2.39 -0.02 1.81 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -66.57 274.57 -1.32 -67.89 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.19 Total: 10.11 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 3.99 Total: -16.40 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -7.39 Total: -108.44 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -66.57 -1.32 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401944839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.566 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds