Wall clock time and date at job start Mon Mar 30 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46608 * 2 1 4 4 C 1.50698 * 109.47061 * 240.00173 * 2 1 3 5 5 H 1.07998 * 119.99847 * 239.99651 * 4 2 1 6 6 C 1.37876 * 120.00144 * 59.99721 * 4 2 1 7 7 N 1.31514 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99997 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47433 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47177 * 119.99899 * 8 6 4 11 11 H 1.48494 * 109.47258 * 239.99862 * 8 6 4 12 12 N 1.46895 * 109.47145 * 119.99972 * 2 1 3 13 13 C 1.46847 * 110.99982 * 294.99845 * 12 2 1 14 14 C 1.53034 * 109.51345 * 185.84805 * 13 12 2 15 15 C 1.53123 * 109.27992 * 300.80438 * 14 13 12 16 16 C 1.52996 * 109.57495 * 177.60435 * 15 14 13 17 17 N 1.46902 * 109.53246 * 297.76796 * 15 14 13 18 18 C 1.53127 * 109.15019 * 57.67185 * 15 14 13 19 19 C 1.46843 * 110.99970 * 59.21210 * 12 2 1 20 20 H 1.08999 * 109.46866 * 299.99708 * 1 2 3 21 21 H 1.08998 * 109.47389 * 60.00529 * 1 2 3 22 22 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 23 23 H 0.97002 * 120.00409 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.46481 * 305.85957 * 13 12 2 25 25 H 1.08994 * 109.46283 * 65.83811 * 13 12 2 26 26 H 1.08997 * 109.50952 * 60.75924 * 14 13 12 27 27 H 1.08998 * 109.50459 * 180.87821 * 14 13 12 28 28 H 1.09000 * 109.46968 * 300.29446 * 16 15 14 29 29 H 1.09000 * 109.47430 * 60.29800 * 16 15 14 30 30 H 1.09002 * 109.46935 * 180.29882 * 16 15 14 31 31 H 1.00897 * 110.99928 * 299.67836 * 17 15 14 32 32 H 1.00902 * 111.00023 * 63.62798 * 17 15 14 33 33 H 1.08997 * 109.49981 * 182.39822 * 18 15 14 34 34 H 1.08999 * 109.50124 * 62.28085 * 18 15 14 35 35 H 1.08993 * 109.46313 * 294.17341 * 19 12 2 36 36 H 1.09000 * 109.46480 * 54.15451 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6039 10 1 1.1678 -1.5866 -4.8165 11 1 3.1471 -0.1857 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.6489 0.0390 2.4176 14 6 2.2968 -0.6294 3.6323 15 6 1.8224 -2.0824 3.7229 16 6 2.5122 -2.7744 4.9002 17 7 0.3670 -2.1125 3.9199 18 6 2.1779 -2.8089 2.4226 19 6 1.5335 -2.0774 1.2428 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4845 24 1 1.9956 1.0696 2.3421 25 1 0.5650 0.0279 2.5321 26 1 3.3813 -0.6065 3.5250 27 1 2.0089 -0.0957 4.5380 28 1 3.5920 -2.7496 4.7542 29 1 2.2586 -2.2567 5.8253 30 1 2.1772 -3.8100 4.9599 31 1 0.1076 -1.6389 4.7722 32 1 -0.1137 -1.7169 3.1258 33 1 1.8049 -3.8322 2.4639 34 1 3.2605 -2.8203 2.2964 35 1 0.4502 -2.0784 1.3627 36 1 1.7966 -2.5840 0.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575566819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:10 Heat of formation + Delta-G solvation = -5.445260 kcal Electronic energy + Delta-G solvation = -15252.676344 eV Core-core repulsion = 12964.127294 eV Total energy + Delta-G solvation = -2288.549050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27693 -35.64859 -32.60184 -30.37839 -29.87341 -28.96000 -26.35335 -25.24510 -22.62710 -22.07116 -19.80364 -18.08975 -16.13263 -15.84375 -15.11939 -14.68704 -14.18713 -14.05069 -13.69786 -13.22556 -12.52919 -12.27019 -12.02279 -11.80790 -11.67417 -11.36283 -11.24896 -11.01683 -10.73230 -10.59083 -10.37132 -10.25023 -10.14341 -9.83290 -9.50445 -8.82479 -8.44904 -8.37622 -7.08751 -6.00875 -4.04458 3.30272 3.38203 3.42836 4.41817 4.72528 4.99089 5.06082 5.20071 5.31369 5.36931 5.70566 5.81346 5.84771 5.97112 6.05500 6.07757 6.19827 6.30940 6.42385 6.44858 6.48078 6.69475 6.76061 6.85649 6.90625 7.14360 7.43166 7.52270 7.67087 7.73363 7.84848 8.15075 8.40636 8.62437 9.02138 9.60822 11.06355 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051078 B = 0.008479 C = 0.007924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.049344 B = 3301.660044 C = 3532.652404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.053 3.947 14 C -0.142 4.142 15 C 0.114 3.886 16 C -0.134 4.134 17 N -0.841 5.841 18 C -0.104 4.104 19 C 0.061 3.939 20 H 0.006 0.994 21 H 0.087 0.913 22 H 0.030 0.970 23 H 0.259 0.741 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.331 0.669 32 H 0.343 0.657 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -3.943 11.036 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.254 5.254 13 C -0.076 4.076 14 C -0.181 4.181 15 C 0.021 3.979 16 C -0.192 4.192 17 N -0.372 5.372 18 C -0.142 4.142 19 C -0.068 4.068 20 H 0.025 0.975 21 H 0.106 0.894 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.171 -4.644 10.882 11.889 hybrid contribution -0.619 0.822 -0.901 1.368 sum 0.552 -3.822 9.981 10.702 Atomic orbital electron populations 1.22398 1.00948 0.99296 1.00418 1.19290 0.89677 0.94501 0.86101 0.94463 1.21165 1.30433 1.12426 0.89689 0.91868 1.24935 0.95250 0.95129 0.99032 1.69896 1.37188 1.23103 1.23265 0.86476 0.78540 0.79676 0.82936 1.19723 1.21185 1.21085 1.62243 1.59699 1.01491 1.01983 1.21986 0.96602 0.97895 0.91106 1.22363 1.02060 0.96504 0.97221 1.20840 0.87600 0.93763 0.95706 1.21778 0.99827 1.00688 0.96909 1.59051 1.06428 1.63991 1.07772 1.21686 1.01035 0.98358 0.93143 1.21961 0.96135 0.90527 0.98133 0.97529 0.89398 0.95128 0.93090 0.91737 0.96093 0.91043 0.92869 0.92406 0.93375 0.92262 0.85689 0.84152 0.91880 0.91353 0.95584 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.28 37.16 0.31 -3.82 16 2 C 0.21 5.28 2.35 -68.87 -0.16 5.12 16 3 H 0.04 1.04 8.08 -51.93 -0.42 0.62 16 4 C -0.50 -13.61 7.86 -34.44 -0.27 -13.88 16 5 H 0.06 1.73 6.76 -52.49 -0.35 1.38 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 N -0.53 -11.26 4.63 -228.09 -1.06 -12.32 16 13 C 0.05 0.96 4.79 -3.84 -0.02 0.94 16 14 C -0.14 -2.12 5.05 -26.65 -0.13 -2.25 16 15 C 0.11 1.62 0.95 -131.47 -0.12 1.50 16 16 C -0.13 -1.62 8.78 37.16 0.33 -1.30 16 17 N -0.84 -11.68 8.80 0.85 0.01 -11.67 16 18 C -0.10 -1.69 5.08 -26.64 -0.14 -1.82 16 19 C 0.06 1.19 4.43 -3.83 -0.02 1.17 16 20 H 0.01 0.13 6.65 -51.93 -0.35 -0.22 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 22 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 25 H 0.02 0.38 5.41 -51.93 -0.28 0.10 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.33 3.98 9.00 -39.29 -0.35 3.63 16 32 H 0.34 5.25 5.60 -39.29 -0.22 5.03 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.03 0.52 5.12 -51.93 -0.27 0.25 16 36 H 0.08 1.81 6.35 -51.93 -0.33 1.48 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -27.65 267.42 -7.47 -35.13 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.74 Total: 6.23 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.32 Total: -12.86 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.42 Total: -48.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.65 -7.47 -35.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575566819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.680 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds