Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46842 * 111.00436 * 295.79054 * 12 2 1 14 14 C 1.53039 * 109.52811 * 185.84000 * 13 12 2 15 15 C 1.53122 * 109.27645 * 300.82551 * 14 13 12 16 16 C 1.52998 * 109.57497 * 177.59087 * 15 14 13 17 17 N 1.46905 * 109.51763 * 297.74617 * 15 14 13 18 18 C 1.53120 * 109.16099 * 57.64978 * 15 14 13 19 19 C 1.46845 * 110.99925 * 60.00308 * 12 2 1 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.46330 * 305.86164 * 13 12 2 25 25 H 1.09007 * 109.46087 * 65.82320 * 13 12 2 26 26 H 1.08996 * 109.50285 * 180.88345 * 14 13 12 27 27 H 1.09001 * 109.53227 * 60.78114 * 14 13 12 28 28 H 1.09000 * 109.46672 * 300.28450 * 16 15 14 29 29 H 1.08998 * 109.47054 * 60.28092 * 16 15 14 30 30 H 1.08997 * 109.47612 * 180.28212 * 16 15 14 31 31 H 1.00901 * 110.99939 * 299.68227 * 17 15 14 32 32 H 1.00899 * 111.00437 * 63.64089 * 17 15 14 33 33 H 1.08999 * 109.49638 * 182.40475 * 18 15 14 34 34 H 1.08995 * 109.53245 * 62.30930 * 18 15 14 35 35 H 1.09000 * 109.46446 * 294.17421 * 19 12 2 36 36 H 1.09007 * 109.46415 * 54.15738 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 1.6327 -2.1090 -1.1841 14 6 2.2799 -2.8290 -2.3694 15 6 1.8215 -2.1694 -3.6730 16 6 2.5112 -2.8453 -4.8597 17 7 0.3652 -2.3080 -3.8076 18 6 2.1936 -0.6844 -3.6428 19 6 1.5488 -0.0267 -2.4206 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.9040 -0.5274 4.4375 24 1 1.9682 -2.5671 -0.2537 25 1 0.5481 -2.1901 -1.2581 26 1 1.9798 -3.8768 -2.3666 27 1 3.3648 -2.7608 -2.2890 28 1 3.5917 -2.7440 -4.7577 29 1 2.2458 -3.9023 -4.8803 30 1 2.1876 -2.3713 -5.7863 31 1 0.0950 -3.2799 -3.8298 32 1 -0.1147 -1.8160 -3.0688 33 1 1.8318 -0.2002 -4.5499 34 1 3.2769 -0.5813 -3.5825 35 1 0.4647 -0.1175 -2.4889 36 1 1.8237 1.0276 -2.3885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575566822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = 3.712099 kcal Electronic energy + Delta-G solvation = -15315.586508 eV Core-core repulsion = 13027.434551 eV Total energy + Delta-G solvation = -2288.151957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41262 -35.87200 -32.55492 -30.55056 -30.33142 -29.22953 -26.76445 -25.23693 -22.71242 -22.11163 -19.83867 -18.21961 -16.56152 -15.90135 -15.36355 -14.77462 -14.34484 -14.05017 -13.81131 -13.31627 -12.83057 -12.44888 -12.27471 -12.11775 -11.86520 -11.72116 -11.37253 -11.29418 -10.91411 -10.67595 -10.53376 -10.19632 -10.04144 -9.73453 -9.48788 -8.99936 -8.60822 -8.46541 -7.29795 -6.08984 -4.07532 3.24074 3.35057 3.37170 4.37693 4.66075 4.79818 4.99551 5.13857 5.23680 5.31454 5.65795 5.73776 5.80393 5.90977 5.95531 5.99022 6.06290 6.20042 6.21424 6.26863 6.33766 6.40488 6.49707 6.55801 6.62933 6.71875 6.89711 7.22734 7.37210 7.60405 7.60967 7.95878 8.11545 8.64414 8.96852 9.53168 11.03819 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053985 B = 0.008970 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.542047 B = 3120.687619 C = 3323.122246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.180 3.820 3 H 0.040 0.960 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.520 5.520 13 C 0.060 3.940 14 C -0.145 4.145 15 C 0.113 3.887 16 C -0.134 4.134 17 N -0.842 5.842 18 C -0.100 4.100 19 C 0.048 3.952 20 H 0.044 0.956 21 H 0.031 0.969 22 H 0.052 0.948 23 H 0.264 0.736 24 H 0.092 0.908 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.334 0.666 32 H 0.341 0.659 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -1.666 -13.098 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.544 4.544 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.243 5.243 13 C -0.068 4.068 14 C -0.185 4.185 15 C 0.020 3.980 16 C -0.192 4.192 17 N -0.373 5.373 18 C -0.138 4.138 19 C -0.081 4.081 20 H 0.063 0.937 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.548 -1.255 -13.598 13.743 hybrid contribution -1.552 0.281 1.285 2.035 sum -3.100 -0.974 -12.312 12.734 Atomic orbital electron populations 1.22815 1.01854 1.00757 0.99023 1.19761 0.88595 0.95446 0.88920 0.94190 1.20986 1.31658 1.13770 0.87958 0.89973 1.24926 0.95859 0.96591 0.95832 1.69880 1.45684 1.40353 0.97881 0.86867 0.80435 0.83930 0.76950 1.20859 1.22422 1.19308 1.62063 1.59303 1.01542 1.01421 1.22010 0.96130 0.89855 0.98776 1.22421 1.02312 0.98244 0.95511 1.20845 0.87680 0.95812 0.93670 1.21773 0.99870 0.99781 0.97793 1.59078 1.06111 1.17706 1.54386 1.21602 1.01032 0.93739 0.97440 1.22094 0.96813 0.98392 0.90805 0.93745 0.95033 0.92935 0.92630 0.88934 0.96305 0.92599 0.90945 0.92335 0.93208 0.92345 0.85434 0.84381 0.91759 0.91098 0.95264 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 7.99 37.16 0.30 -3.73 16 2 C 0.18 4.24 2.00 -68.86 -0.14 4.10 16 3 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 4 C -0.51 -13.97 8.44 -34.44 -0.29 -14.26 16 5 H 0.08 2.47 6.64 -52.49 -0.35 2.12 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.89 21.93 24.37 -169.99 -4.14 17.78 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.52 -10.56 4.67 -228.08 -1.07 -11.63 16 13 C 0.06 1.14 4.51 -3.84 -0.02 1.12 16 14 C -0.15 -2.23 5.05 -26.65 -0.13 -2.36 16 15 C 0.11 1.54 0.95 -131.47 -0.12 1.41 16 16 C -0.13 -1.57 8.78 37.16 0.33 -1.24 16 17 N -0.84 -11.08 8.80 0.85 0.01 -11.07 16 18 C -0.10 -1.46 5.08 -26.65 -0.14 -1.60 16 19 C 0.05 0.81 4.65 -3.84 -0.02 0.80 16 20 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 21 H 0.03 0.60 6.54 -51.93 -0.34 0.26 16 22 H 0.05 1.11 6.63 -51.93 -0.34 0.77 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.09 2.02 6.02 -51.93 -0.31 1.71 16 25 H 0.02 0.35 5.39 -51.92 -0.28 0.07 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.33 3.91 9.00 -39.29 -0.35 3.56 16 32 H 0.34 4.87 5.60 -39.29 -0.22 4.65 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.50 5.13 -51.93 -0.27 0.23 16 36 H 0.07 1.13 8.12 -51.92 -0.42 0.71 16 LS Contribution 260.06 15.07 3.92 3.92 Total: -1.00 -28.85 260.06 -6.41 -35.27 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.57 Total: 6.11 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.33 Total: -13.86 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.28 Total: -49.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.85 -6.41 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575566822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.977 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds