Wall clock time and date at job start Mon Mar 30 2020 02:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.52158 * 2 1 4 4 C 1.53190 * 109.50079 * 239.92435 * 2 1 3 5 5 N 1.46924 * 108.77665 * 185.41272 * 4 2 1 6 6 C 1.36934 * 120.63137 * 233.58338 * 5 4 2 7 7 H 1.08001 * 120.00021 * 27.69558 * 6 5 4 8 8 C 1.38810 * 120.00410 * 207.69826 * 6 5 4 9 9 N 1.31621 * 119.99754 * 17.35123 * 8 6 5 10 10 Si 1.86803 * 120.00256 * 197.35852 * 8 6 5 11 11 H 1.48498 * 109.47385 * 59.99545 * 10 8 6 12 12 H 1.48498 * 109.47120 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46768 * 299.99564 * 10 8 6 14 14 C 1.46931 * 118.74109 * 53.60439 * 5 4 2 15 15 C 1.53191 * 108.77224 * 306.39091 * 14 5 4 16 16 C 1.53036 * 109.49817 * 120.07923 * 2 1 3 17 17 H 1.09006 * 109.44950 * 61.31036 * 16 2 1 18 18 N 1.46900 * 109.46322 * 301.33986 * 16 2 1 19 19 C 1.46899 * 110.99815 * 174.93028 * 18 16 2 20 20 C 1.46895 * 111.00026 * 298.88392 * 18 16 2 21 21 H 1.08994 * 109.47365 * 299.91544 * 1 2 3 22 22 H 1.08998 * 109.47375 * 59.91952 * 1 2 3 23 23 H 1.09002 * 109.46708 * 179.91857 * 1 2 3 24 24 H 1.08998 * 109.58983 * 65.61982 * 4 2 1 25 25 H 1.09008 * 109.58369 * 305.19549 * 4 2 1 26 26 H 0.97004 * 119.99862 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.58465 * 186.60611 * 14 5 4 28 28 H 1.08995 * 109.70152 * 66.24779 * 14 5 4 29 29 H 1.08989 * 109.50127 * 294.68230 * 15 14 5 30 30 H 1.08999 * 109.49548 * 174.58134 * 15 14 5 31 31 H 1.09002 * 109.46871 * 180.02562 * 19 18 16 32 32 H 1.09002 * 109.47570 * 299.99792 * 19 18 16 33 33 H 1.08999 * 109.47395 * 60.00800 * 19 18 16 34 34 H 1.09000 * 109.47274 * 296.04697 * 20 18 16 35 35 H 1.09005 * 109.47121 * 56.04897 * 20 18 16 36 36 H 1.08997 * 109.47138 * 176.04428 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 3.5046 -0.8289 -1.1696 6 6 4.2936 -0.3791 -2.1944 7 1 3.9468 0.4208 -2.8318 8 6 5.5391 -0.9511 -2.4141 9 7 5.8280 -2.1218 -1.8863 10 14 6.8054 -0.0594 -3.4586 11 1 7.1180 1.2552 -2.8428 12 1 8.0434 -0.8755 -3.5398 13 1 6.2612 0.1506 -4.8242 14 6 4.1054 -1.4265 0.0308 15 6 3.5709 -0.6948 1.2660 16 6 2.0408 -0.7230 1.2483 17 1 1.6968 -1.7573 1.2350 18 7 1.5251 -0.0511 2.4486 19 6 1.8958 -0.7876 3.6644 20 6 1.9904 1.3407 2.5137 21 1 -0.3634 0.5125 0.8907 22 1 -0.3634 0.5151 -0.8892 23 1 -0.3633 -1.0277 -0.0015 24 1 1.7638 -0.1578 -2.1389 25 1 1.6053 -1.7216 -1.2981 26 1 6.6985 -2.5214 -2.0396 27 1 5.1897 -1.3243 -0.0138 28 1 3.8399 -2.4821 0.0880 29 1 3.9159 0.3389 1.2541 30 1 3.9334 -1.1896 2.1671 31 1 1.5011 -0.2687 4.5379 32 1 1.4791 -1.7939 3.6210 33 1 2.9818 -0.8467 3.7365 34 1 3.0756 1.3567 2.6147 35 1 1.7027 1.8630 1.6012 36 1 1.5381 1.8351 3.3733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606256387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:50 Heat of formation + Delta-G solvation = 22.491547 kcal Electronic energy + Delta-G solvation = -15303.037439 eV Core-core repulsion = 13015.699820 eV Total energy + Delta-G solvation = -2287.337619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96760 -35.54858 -32.98565 -31.06694 -29.76573 -27.34681 -25.77566 -25.39096 -23.28995 -21.03043 -20.63426 -18.62985 -16.63359 -15.47319 -14.88331 -14.51290 -14.22846 -13.85907 -13.57149 -13.12284 -12.74334 -12.49231 -12.02478 -11.82480 -11.46499 -11.40415 -11.24555 -11.10869 -10.93314 -10.65292 -10.43316 -10.16479 -10.05998 -9.83660 -9.67812 -9.38620 -8.45117 -7.83004 -6.63658 -5.76276 -3.18011 3.39396 3.44937 3.46413 4.36404 4.51605 5.24437 5.38707 5.40906 5.52381 5.61857 5.65992 5.73822 5.79860 5.92099 5.99243 6.05488 6.15431 6.23522 6.29185 6.42112 6.46202 6.56830 6.68282 6.73273 6.76605 6.88985 7.08822 7.32196 7.46071 7.50488 7.67729 7.81366 8.47700 9.24050 9.88130 10.45155 11.32135 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042491 B = 0.009154 C = 0.008535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.807931 B = 3058.073991 C = 3279.798690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 H 0.065 0.935 4 C 0.152 3.848 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.904 5.904 10 Si 0.902 3.098 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.176 3.824 15 C -0.172 4.172 16 C 0.096 3.904 17 H 0.073 0.927 18 N -0.541 5.541 19 C 0.023 3.977 20 C 0.021 3.979 21 H 0.058 0.942 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.017 0.983 26 H 0.254 0.746 27 H 0.085 0.915 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 3.697 7.949 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.025 3.975 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.049 3.951 15 C -0.212 4.212 16 C -0.012 4.012 17 H 0.091 0.909 18 N -0.264 5.264 19 C -0.126 4.126 20 C -0.128 4.128 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.546 3.597 7.887 11.493 hybrid contribution 1.680 0.346 -0.398 1.761 sum -5.866 3.944 7.489 10.298 Atomic orbital electron populations 1.21649 0.95639 1.01098 1.00702 1.21697 0.94794 0.99906 0.95577 0.91653 1.20964 0.85625 0.96546 0.94401 1.44064 0.99482 1.71520 1.16449 1.19155 0.98252 1.12206 1.08490 0.91753 1.25028 0.99924 0.95392 0.99393 1.70033 1.21923 1.14628 1.48234 0.86379 0.81104 0.79100 0.80259 1.21110 1.21651 1.20869 1.20679 0.99232 0.92797 0.82363 1.22820 0.96383 1.01619 1.00418 1.21683 0.93204 0.97503 0.88826 0.90897 1.62344 1.59149 1.02352 1.02559 1.22344 0.98838 0.98814 0.92585 1.22391 0.98222 0.90201 1.01947 0.92297 0.93863 0.93477 0.92788 0.96489 0.93646 0.89639 0.96570 0.92517 0.93432 0.92250 0.91844 0.95366 0.95368 0.91134 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.03 37.16 0.34 -1.70 16 2 C -0.10 -1.79 2.03 -90.50 -0.18 -1.98 16 3 H 0.07 1.24 6.42 -51.93 -0.33 0.91 16 4 C 0.15 3.27 5.80 -3.71 -0.02 3.25 16 5 N -0.59 -15.16 2.99 -172.32 -0.52 -15.68 16 6 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 7 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 9 N -0.90 -26.58 11.19 55.49 0.62 -25.96 16 10 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.18 4.29 5.31 -3.71 -0.02 4.27 16 15 C -0.17 -3.40 4.65 -26.61 -0.12 -3.52 16 16 C 0.10 1.70 1.65 -67.67 -0.11 1.58 16 17 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 18 N -0.54 -8.29 4.18 -243.12 -1.02 -9.31 16 19 C 0.02 0.30 9.31 60.06 0.56 0.86 16 20 C 0.02 0.30 8.79 60.06 0.53 0.82 16 21 H 0.06 0.87 7.57 -51.93 -0.39 0.47 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 25 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.17 6.56 -51.94 -0.34 0.83 16 30 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.39 6.41 -51.93 -0.33 0.06 16 34 H 0.03 0.42 6.54 -51.93 -0.34 0.08 16 35 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 271.74 15.07 4.10 4.10 Total: -1.00 -29.05 271.74 -7.16 -36.22 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.05 Total: -2.67 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 0.73 Total: -3.62 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.91 Total: -50.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.05 -7.16 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.710 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds