Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.49246 * 2 1 4 4 C 1.53622 * 109.46063 * 120.20365 * 2 1 3 5 5 N 1.46916 * 108.54636 * 174.74271 * 4 2 1 6 6 C 1.36938 * 120.63394 * 126.37167 * 5 4 2 7 7 H 1.08001 * 119.99753 * 331.42146 * 6 5 4 8 8 C 1.38807 * 119.99951 * 151.14323 * 6 5 4 9 9 N 1.31621 * 120.00266 * 346.01209 * 8 6 5 10 10 Si 1.86804 * 119.99838 * 166.01060 * 8 6 5 11 11 H 1.48497 * 109.47016 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46885 * 119.99839 * 10 8 6 13 13 H 1.48501 * 109.47347 * 239.99739 * 10 8 6 14 14 C 1.46928 * 118.73865 * 306.09512 * 5 4 2 15 15 C 1.53195 * 108.77561 * 53.85983 * 14 5 4 16 16 C 1.53039 * 109.49776 * 239.93457 * 2 1 3 17 17 H 1.08992 * 109.44841 * 298.66372 * 16 2 1 18 18 N 1.46901 * 109.45999 * 58.63102 * 16 2 1 19 19 C 1.46902 * 111.00084 * 67.30695 * 18 16 2 20 20 C 1.46892 * 110.99914 * 191.26193 * 18 16 2 21 21 H 1.08994 * 109.46807 * 183.74418 * 1 2 3 22 22 H 1.09001 * 109.47079 * 303.74479 * 1 2 3 23 23 H 1.09007 * 109.47017 * 63.74443 * 1 2 3 24 24 H 1.09010 * 109.73628 * 55.00009 * 4 2 1 25 25 H 1.09004 * 109.66593 * 294.43967 * 4 2 1 26 26 H 0.97002 * 119.99948 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.58765 * 173.64641 * 14 5 4 28 28 H 1.09000 * 109.59094 * 293.93525 * 14 5 4 29 29 H 1.09004 * 109.49257 * 65.31408 * 15 14 5 30 30 H 1.08995 * 109.50394 * 185.41274 * 15 14 5 31 31 H 1.09001 * 109.47028 * 60.00404 * 19 18 16 32 32 H 1.08999 * 109.47592 * 179.97438 * 19 18 16 33 33 H 1.09001 * 109.47596 * 300.00451 * 19 18 16 34 34 H 1.09000 * 109.47313 * 53.55301 * 20 18 16 35 35 H 1.09008 * 109.47301 * 173.55030 * 20 18 16 36 36 H 1.09003 * 109.47561 * 293.55290 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0418 -0.7287 1.2518 5 7 3.5053 -0.8282 1.1690 6 6 4.2943 -0.3781 2.1937 7 1 3.9516 0.4284 2.8250 8 6 5.5321 -0.9622 2.4246 9 7 5.8350 -2.1095 1.8551 10 14 6.7682 -0.1201 3.5438 11 1 6.1886 1.1475 4.0561 12 1 7.0911 -1.0132 4.6855 13 1 8.0072 0.1746 2.7800 14 6 4.1060 -1.4254 -0.0315 15 6 3.5709 -0.6939 -1.2666 16 6 2.0408 -0.7227 -1.2485 17 1 1.6972 -1.7570 -1.2352 18 7 1.5245 -0.0509 -2.4486 19 6 2.1048 1.2910 -2.5914 20 6 1.7671 -0.8600 -3.6503 21 1 -0.3633 -1.0254 0.0671 22 1 -0.3633 0.5709 0.8545 23 1 -0.3633 0.4546 -0.9217 24 1 1.6096 -1.7283 1.2984 25 1 1.7636 -0.1662 2.1431 26 1 6.6999 -2.5179 2.0167 27 1 5.1902 -1.3228 0.0128 28 1 3.8408 -2.4812 -0.0862 29 1 3.9155 0.3401 -1.2546 30 1 3.9334 -1.1883 -2.1678 31 1 3.1887 1.2111 -2.6747 32 1 1.7060 1.7659 -3.4879 33 1 1.8509 1.8917 -1.7180 34 1 1.3659 -1.8624 -3.5005 35 1 1.2760 -0.3963 -4.5059 36 1 2.8393 -0.9220 -3.8364 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606256390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = 21.914212 kcal Electronic energy + Delta-G solvation = -15292.206931 eV Core-core repulsion = 13004.844277 eV Total energy + Delta-G solvation = -2287.362654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.92166 -35.55144 -32.97662 -31.02515 -29.76975 -27.35860 -25.74485 -25.38950 -23.28163 -21.01964 -20.61968 -18.63485 -16.63441 -15.44050 -14.87784 -14.49859 -14.24010 -13.86058 -13.54223 -13.11742 -12.71667 -12.49726 -12.02411 -11.80780 -11.44838 -11.38866 -11.24780 -11.13054 -10.91765 -10.67361 -10.40841 -10.11729 -10.04199 -9.85816 -9.68407 -9.37086 -8.46917 -7.82357 -6.61644 -5.75452 -3.19834 3.37670 3.45280 3.47647 4.36111 4.51133 5.26078 5.38565 5.42819 5.53196 5.62858 5.66166 5.73773 5.81550 5.92802 5.99218 6.05087 6.16536 6.24667 6.30105 6.43410 6.46916 6.58956 6.69044 6.73514 6.77734 6.90373 7.09612 7.33910 7.47073 7.51345 7.71273 7.81622 8.48970 9.24896 9.88126 10.45216 11.32403 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043129 B = 0.009090 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.053393 B = 3079.668662 C = 3305.704028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.064 0.936 4 C 0.151 3.849 5 N -0.594 5.594 6 C -0.248 4.248 7 H 0.066 0.934 8 C 0.000 4.000 9 N -0.906 5.906 10 Si 0.903 3.097 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.175 3.825 15 C -0.171 4.171 16 C 0.095 3.905 17 H 0.072 0.928 18 N -0.542 5.542 19 C 0.021 3.979 20 C 0.024 3.976 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.054 0.946 26 H 0.252 0.748 27 H 0.088 0.912 28 H 0.015 0.985 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 3.583 -7.918 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.024 3.976 5 N -0.316 5.316 6 C -0.378 4.378 7 H 0.083 0.917 8 C -0.198 4.198 9 N -0.551 5.551 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.212 4.212 16 C -0.012 4.012 17 H 0.090 0.910 18 N -0.264 5.264 19 C -0.127 4.127 20 C -0.124 4.124 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.591 3.547 -7.832 11.470 hybrid contribution 1.658 0.208 0.392 1.716 sum -5.933 3.755 -7.440 10.230 Atomic orbital electron populations 1.21661 0.95726 1.00891 1.00909 1.21730 0.94725 0.99833 0.95453 0.91759 1.21065 0.85632 0.96469 0.94424 1.44086 0.99474 1.71517 1.16521 1.19257 0.98704 1.11561 1.08283 0.91668 1.25082 0.99983 0.95544 0.99235 1.70015 1.22064 1.16029 1.46959 0.86210 0.81424 0.78951 0.80142 1.20262 1.21701 1.21651 1.20718 0.99462 0.92700 0.82280 1.22823 0.96276 1.01671 1.00385 1.21691 0.93277 0.97333 0.88940 0.91009 1.62319 1.58228 1.02966 1.02929 1.22387 0.97674 0.91055 1.01588 1.22328 0.99135 0.98067 0.92880 0.93595 0.93924 0.92107 0.96475 0.92794 0.93749 0.89340 0.96644 0.92347 0.93652 0.95085 0.92548 0.91324 0.91853 0.92200 0.95645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.09 37.16 0.34 -1.72 16 2 C -0.10 -1.76 2.20 -90.28 -0.20 -1.96 16 3 H 0.06 1.23 6.66 -51.92 -0.35 0.88 16 4 C 0.15 3.26 5.83 -3.49 -0.02 3.24 16 5 N -0.59 -15.19 2.99 -172.05 -0.51 -15.71 16 6 C -0.25 -6.93 9.60 -15.06 -0.14 -7.07 16 7 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 8 C 0.00 -0.01 4.99 -17.43 -0.09 -0.10 16 9 N -0.91 -26.61 11.04 55.49 0.61 -26.00 16 10 Si 0.90 21.95 29.58 -169.99 -5.03 16.93 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.17 4.28 5.28 -3.71 -0.02 4.26 16 15 C -0.17 -3.39 4.56 -26.61 -0.12 -3.51 16 16 C 0.10 1.69 1.60 -67.67 -0.11 1.59 16 17 H 0.07 1.33 7.95 -51.93 -0.41 0.92 16 18 N -0.54 -8.30 4.07 -243.13 -0.99 -9.29 16 19 C 0.02 0.31 8.76 60.07 0.53 0.83 16 20 C 0.02 0.33 9.29 60.06 0.56 0.88 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.90 7.45 -51.92 -0.39 0.52 16 24 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 1.20 6.41 -51.93 -0.33 0.87 16 30 H 0.04 0.84 6.82 -51.93 -0.35 0.49 16 31 H 0.03 0.47 6.23 -51.93 -0.32 0.14 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 34 H 0.06 0.82 7.99 -51.93 -0.41 0.40 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.03 0.35 6.92 -51.93 -0.36 -0.01 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -29.05 272.13 -7.17 -36.22 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.08 Total: -2.70 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 0.72 Total: -3.56 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.89 Total: -51.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.05 -7.17 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.138 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds