Wall clock time and date at job start Mon Mar 30 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.49246 * 2 1 4 4 C 1.53622 * 109.46063 * 120.20365 * 2 1 3 5 5 N 1.46916 * 108.54636 * 174.74271 * 4 2 1 6 6 C 1.36938 * 120.63394 * 126.37167 * 5 4 2 7 7 H 1.08001 * 119.99753 * 331.42146 * 6 5 4 8 8 C 1.38807 * 119.99951 * 151.14323 * 6 5 4 9 9 N 1.31621 * 120.00266 * 346.01209 * 8 6 5 10 10 Si 1.86804 * 119.99838 * 166.01060 * 8 6 5 11 11 H 1.48497 * 109.47016 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46885 * 119.99839 * 10 8 6 13 13 H 1.48501 * 109.47347 * 239.99739 * 10 8 6 14 14 C 1.46928 * 118.73865 * 306.09512 * 5 4 2 15 15 C 1.53195 * 108.77561 * 53.85983 * 14 5 4 16 16 C 1.53039 * 109.49776 * 239.93457 * 2 1 3 17 17 H 1.08992 * 109.44841 * 298.66372 * 16 2 1 18 18 N 1.46901 * 109.45999 * 58.63102 * 16 2 1 19 19 C 1.46902 * 111.00084 * 67.30695 * 18 16 2 20 20 C 1.46892 * 110.99914 * 191.26193 * 18 16 2 21 21 H 1.08994 * 109.46807 * 183.74418 * 1 2 3 22 22 H 1.09001 * 109.47079 * 303.74479 * 1 2 3 23 23 H 1.09007 * 109.47017 * 63.74443 * 1 2 3 24 24 H 1.09010 * 109.73628 * 55.00009 * 4 2 1 25 25 H 1.09004 * 109.66593 * 294.43967 * 4 2 1 26 26 H 0.97002 * 119.99948 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.58765 * 173.64641 * 14 5 4 28 28 H 1.09000 * 109.59094 * 293.93525 * 14 5 4 29 29 H 1.09004 * 109.49257 * 65.31408 * 15 14 5 30 30 H 1.08995 * 109.50394 * 185.41274 * 15 14 5 31 31 H 1.09001 * 109.47028 * 60.00404 * 19 18 16 32 32 H 1.08999 * 109.47592 * 179.97438 * 19 18 16 33 33 H 1.09001 * 109.47596 * 300.00451 * 19 18 16 34 34 H 1.09000 * 109.47313 * 53.55301 * 20 18 16 35 35 H 1.09008 * 109.47301 * 173.55030 * 20 18 16 36 36 H 1.09003 * 109.47561 * 293.55290 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0418 -0.7287 1.2518 5 7 3.5053 -0.8282 1.1690 6 6 4.2943 -0.3781 2.1937 7 1 3.9516 0.4284 2.8250 8 6 5.5321 -0.9622 2.4246 9 7 5.8350 -2.1095 1.8551 10 14 6.7682 -0.1201 3.5438 11 1 6.1886 1.1475 4.0561 12 1 7.0911 -1.0132 4.6855 13 1 8.0072 0.1746 2.7800 14 6 4.1060 -1.4254 -0.0315 15 6 3.5709 -0.6939 -1.2666 16 6 2.0408 -0.7227 -1.2485 17 1 1.6972 -1.7570 -1.2352 18 7 1.5245 -0.0509 -2.4486 19 6 2.1048 1.2910 -2.5914 20 6 1.7671 -0.8600 -3.6503 21 1 -0.3633 -1.0254 0.0671 22 1 -0.3633 0.5709 0.8545 23 1 -0.3633 0.4546 -0.9217 24 1 1.6096 -1.7283 1.2984 25 1 1.7636 -0.1662 2.1431 26 1 6.6999 -2.5179 2.0167 27 1 5.1902 -1.3228 0.0128 28 1 3.8408 -2.4812 -0.0862 29 1 3.9155 0.3401 -1.2546 30 1 3.9334 -1.1883 -2.1678 31 1 3.1887 1.2111 -2.6747 32 1 1.7060 1.7659 -3.4879 33 1 1.8509 1.8917 -1.7180 34 1 1.3659 -1.8624 -3.5005 35 1 1.2760 -0.3963 -4.5059 36 1 2.8393 -0.9220 -3.8364 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606256390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:52 Heat of formation + Delta-G solvation = 3.761089 kcal Electronic energy + Delta-G solvation = -15292.994109 eV Core-core repulsion = 13004.844277 eV Total energy + Delta-G solvation = -2288.149833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41808 -37.21308 -34.68679 -32.84530 -31.56067 -28.47144 -27.32592 -27.14023 -24.92897 -22.59543 -22.32415 -20.18793 -18.65412 -17.02650 -16.59090 -15.87385 -15.68064 -15.54213 -15.27921 -14.71031 -14.31803 -14.06218 -13.52247 -13.17484 -12.93519 -12.84786 -12.70596 -12.59003 -12.53382 -12.45573 -12.12272 -11.95845 -11.84471 -11.53994 -11.37662 -10.97257 -10.57643 -9.14105 -8.67200 -7.88004 -5.36351 1.44238 1.45435 1.56535 2.49139 3.09923 3.27860 3.66913 3.85912 4.09289 4.29104 4.35236 4.44733 4.50028 4.64749 4.69126 4.72599 4.82037 4.85450 4.92418 5.01092 5.05570 5.08791 5.10228 5.20523 5.33781 5.42611 5.47852 5.60139 5.62480 5.71820 6.16040 6.24013 6.38060 7.13181 7.84185 8.36401 9.17529 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043129 B = 0.009090 C = 0.008468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.053393 B = 3079.668662 C = 3305.704028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.057 0.943 4 C 0.148 3.852 5 N -0.612 5.612 6 C -0.261 4.261 7 H 0.067 0.933 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.182 3.818 15 C -0.155 4.155 16 C 0.104 3.896 17 H 0.065 0.935 18 N -0.538 5.538 19 C 0.022 3.978 20 C 0.022 3.978 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.012 0.988 25 H 0.053 0.947 26 H 0.249 0.751 27 H 0.053 0.947 28 H -0.007 1.007 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 4.765 -8.767 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.107 4.107 3 H 0.075 0.925 4 C 0.022 3.978 5 N -0.335 5.335 6 C -0.391 4.391 7 H 0.084 0.916 8 C -0.248 4.248 9 N -0.584 5.584 10 Si 0.797 3.203 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.056 3.944 15 C -0.195 4.195 16 C -0.004 4.004 17 H 0.084 0.916 18 N -0.260 5.260 19 C -0.127 4.127 20 C -0.126 4.126 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.802 4.745 -8.696 13.252 hybrid contribution 1.990 -0.179 0.634 2.097 sum -6.812 4.566 -8.061 11.500 Atomic orbital electron populations 1.21566 0.93053 1.01469 1.02008 1.21562 0.96752 0.98637 0.93762 0.92486 1.21216 0.83493 0.96660 0.96439 1.44349 1.01100 1.71559 1.16483 1.19581 0.99388 1.11517 1.08662 0.91567 1.25863 1.01750 0.96180 1.01055 1.70177 1.22256 1.17427 1.48521 0.85176 0.78807 0.78216 0.78087 1.19009 1.21755 1.21688 1.20493 0.97574 0.92106 0.84229 1.22608 0.98134 1.00459 0.98331 1.21500 0.91318 0.97316 0.90315 0.91628 1.62326 1.57677 1.03399 1.02643 1.22431 0.97079 0.90498 1.02649 1.22430 0.99179 0.98312 0.92653 0.93279 0.92818 0.90983 0.96956 0.92847 0.94134 0.92833 0.98919 0.92966 0.92420 0.96173 0.89882 0.91868 0.91506 0.89719 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 9.09 71.98 0.65 -2.81 16 2 C -0.09 -3.03 2.20 -10.57 -0.02 -3.05 16 3 H 0.06 2.10 6.66 -2.38 -0.02 2.08 16 4 C 0.15 6.36 5.83 86.51 0.50 6.86 16 5 N -0.61 -31.83 2.99 -698.26 -2.09 -33.92 16 6 C -0.26 -14.76 9.60 84.03 0.81 -13.96 16 7 H 0.07 3.65 7.87 -2.91 -0.02 3.63 16 8 C -0.05 -3.06 4.99 84.86 0.42 -2.63 16 9 N -0.94 -56.61 11.04 21.65 0.24 -56.37 16 10 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 C 0.18 9.18 5.28 86.36 0.46 9.64 16 15 C -0.15 -6.10 4.56 30.67 0.14 -5.96 16 16 C 0.10 3.55 1.60 44.94 0.07 3.63 16 17 H 0.07 2.35 7.95 -2.39 -0.02 2.33 16 18 N -0.54 -15.02 4.07 -923.12 -3.76 -18.78 16 19 C 0.02 0.56 8.76 127.69 1.12 1.68 16 20 C 0.02 0.53 9.29 127.69 1.19 1.72 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.90 7.45 -2.38 -0.02 1.88 16 24 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.05 2.26 7.93 -2.38 -0.02 2.24 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.05 3.05 5.99 -2.39 -0.01 3.04 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.05 2.12 6.41 -2.39 -0.02 2.11 16 30 H 0.06 2.11 6.82 -2.39 -0.02 2.09 16 31 H 0.02 0.56 6.23 -2.39 -0.01 0.55 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.71 6.54 -2.39 -0.02 1.70 16 34 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 35 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.02 0.51 6.92 -2.39 -0.02 0.49 16 Total: -1.00 -62.51 272.13 2.79 -59.72 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.03 Total: 6.55 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.34 Total: -4.90 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -5.61 Total: -109.07 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -62.51 2.79 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.484 kcal (2) G-P(sol) polarization free energy of solvation -62.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds