Wall clock time and date at job start Mon Mar 30 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.49147 * 2 1 4 4 C 1.53190 * 109.49776 * 120.06198 * 2 1 3 5 5 N 1.46923 * 108.77529 * 65.35381 * 4 2 1 6 6 C 1.36942 * 120.62884 * 233.58370 * 5 4 2 7 7 H 1.08000 * 119.99676 * 28.01055 * 6 5 4 8 8 C 1.38811 * 120.00045 * 208.01168 * 6 5 4 9 9 N 1.31615 * 119.99951 * 29.39868 * 8 6 5 10 10 Si 1.86799 * 119.99989 * 209.40281 * 8 6 5 11 11 H 1.48500 * 109.47410 * 94.98821 * 10 8 6 12 12 H 1.48501 * 109.46871 * 214.99057 * 10 8 6 13 13 H 1.48503 * 109.47122 * 334.98628 * 10 8 6 14 14 C 1.46923 * 118.74377 * 53.85375 * 5 4 2 15 15 C 1.53626 * 108.54234 * 306.09817 * 14 5 4 16 16 C 1.53039 * 109.52172 * 239.91987 * 2 1 3 17 17 H 1.09001 * 109.45494 * 181.37434 * 16 2 1 18 18 N 1.46898 * 109.46089 * 61.40352 * 16 2 1 19 19 C 1.46898 * 111.00164 * 62.91707 * 18 16 2 20 20 C 1.46903 * 110.99680 * 186.87254 * 18 16 2 21 21 H 1.09000 * 109.47336 * 300.11089 * 1 2 3 22 22 H 1.09000 * 109.47340 * 60.11181 * 1 2 3 23 23 H 1.08998 * 109.46935 * 180.11194 * 1 2 3 24 24 H 1.08994 * 109.58782 * 305.56101 * 4 2 1 25 25 H 1.09002 * 109.58128 * 185.13315 * 4 2 1 26 26 H 0.97001 * 120.00301 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.58397 * 65.92871 * 14 5 4 28 28 H 1.09002 * 109.59119 * 186.35370 * 14 5 4 29 29 H 1.08996 * 109.63451 * 294.86249 * 15 14 5 30 30 H 1.09002 * 109.45796 * 174.73622 * 15 14 5 31 31 H 1.08996 * 109.47287 * 59.99925 * 19 18 16 32 32 H 1.09002 * 109.47163 * 179.97438 * 19 18 16 33 33 H 1.08996 * 109.47000 * 299.99573 * 19 18 16 34 34 H 1.08998 * 109.47347 * 66.27355 * 20 18 16 35 35 H 1.09003 * 109.46977 * 186.27433 * 20 18 16 36 36 H 1.08999 * 109.47167 * 306.26641 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6524 -2.1379 1.1698 6 6 0.9648 -2.7314 2.1947 7 1 0.3224 -2.1383 2.8287 8 6 1.0934 -4.0953 2.4186 9 7 2.2133 -4.7111 2.1038 10 14 -0.3227 -5.0567 3.1666 11 1 -1.1317 -5.6702 2.0828 12 1 0.2147 -6.1242 4.0480 13 1 -1.1770 -4.1400 3.9636 14 6 2.0203 -2.9052 -0.0279 15 6 1.5043 -2.1559 -1.2657 16 6 2.0414 -0.7230 -1.2482 17 1 3.1312 -0.7437 -1.2348 18 7 1.5801 -0.0129 -2.4485 19 6 2.1347 1.3464 -2.5019 20 6 1.9127 -0.7653 -3.6656 21 1 -0.3634 0.5155 0.8890 22 1 -0.3634 0.5121 -0.8910 23 1 -0.3633 -1.0277 0.0020 24 1 1.6004 -0.2728 2.1389 25 1 3.1275 -0.6453 1.2984 26 1 2.3031 -5.6642 2.2599 27 1 3.1048 -3.0015 -0.0813 28 1 1.5654 -3.8947 0.0180 29 1 0.4146 -2.1361 -1.2541 30 1 1.8494 -2.6627 -2.1670 31 1 3.2232 1.2941 -2.5234 32 1 1.7776 1.8495 -3.4005 33 1 1.8150 1.9040 -1.6216 34 1 1.3447 -1.6954 -3.6844 35 1 1.6611 -0.1681 -4.5421 36 1 2.9791 -0.9906 -3.6735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606256392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:56 Heat of formation + Delta-G solvation = 25.481862 kcal Electronic energy + Delta-G solvation = -15358.333863 eV Core-core repulsion = 13071.125914 eV Total energy + Delta-G solvation = -2287.207949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.92852 -35.68727 -32.78993 -30.85777 -29.96318 -27.28357 -26.04033 -25.36622 -22.96643 -21.50296 -20.71253 -17.95792 -16.78840 -15.55129 -14.75556 -14.47967 -14.36355 -13.97753 -13.45766 -13.19800 -12.82149 -12.35792 -12.15060 -11.99050 -11.70858 -11.29402 -11.17828 -10.84746 -10.79501 -10.53884 -10.43691 -10.16255 -10.12082 -9.85599 -9.41204 -9.24860 -8.35805 -7.99640 -6.66939 -5.79180 -3.11828 3.41567 3.50180 3.51646 4.27503 4.55527 5.29737 5.31487 5.35092 5.43809 5.56899 5.64932 5.72264 5.82197 5.88596 6.00022 6.05438 6.14703 6.20222 6.32976 6.50093 6.56023 6.64134 6.66945 6.85474 6.92205 6.94360 7.16186 7.32911 7.39085 7.45540 7.56882 7.88861 8.46266 9.22301 9.89230 10.48242 11.28715 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048524 B = 0.009098 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.900629 B = 3076.710073 C = 3241.341684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 H 0.054 0.946 4 C 0.150 3.850 5 N -0.585 5.585 6 C -0.257 4.257 7 H 0.065 0.935 8 C 0.008 3.992 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.278 1.278 14 C 0.174 3.826 15 C -0.136 4.136 16 C 0.098 3.902 17 H 0.030 0.970 18 N -0.542 5.542 19 C 0.024 3.976 20 C 0.025 3.975 21 H 0.036 0.964 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.013 0.987 26 H 0.253 0.747 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 8.347 -8.580 11.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.072 0.928 4 C 0.023 3.977 5 N -0.308 5.308 6 C -0.386 4.386 7 H 0.083 0.917 8 C -0.192 4.192 9 N -0.531 5.531 10 Si 0.717 3.283 11 H -0.215 1.215 12 H -0.220 1.220 13 H -0.203 1.203 14 C 0.048 3.952 15 C -0.175 4.175 16 C -0.009 4.009 17 H 0.048 0.952 18 N -0.266 5.266 19 C -0.124 4.124 20 C -0.124 4.124 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.971 8.219 -8.510 11.870 hybrid contribution 0.344 -0.658 0.249 0.783 sum -0.628 7.560 -8.261 11.216 Atomic orbital electron populations 1.21599 0.94659 1.02631 0.99369 1.21637 0.97254 0.97502 0.95434 0.92817 1.20952 0.95768 0.86451 0.94545 1.44038 1.65172 1.05409 1.16159 1.19103 1.18429 0.91533 1.09570 0.91683 1.24907 0.96268 0.98584 0.99421 1.70218 1.22272 1.09599 1.51047 0.86494 0.83262 0.79961 0.78537 1.21488 1.22022 1.20283 1.20750 0.96380 0.94915 0.83185 1.22434 1.01762 0.93814 0.99498 1.21613 0.95947 0.94522 0.88831 0.95174 1.62096 1.59563 1.02416 1.02553 1.22374 0.96784 0.91145 1.02137 1.22369 0.98608 0.99139 0.92244 0.94511 0.93375 0.91368 0.92581 0.96938 0.93764 0.96560 0.90749 0.91248 0.93460 0.96306 0.92181 0.91169 0.91029 0.92320 0.96111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.56 37.16 0.32 -1.94 16 2 C -0.10 -1.77 2.46 -90.50 -0.22 -1.99 16 3 H 0.05 0.88 6.40 -51.93 -0.33 0.55 16 4 C 0.15 3.22 5.91 -3.71 -0.02 3.20 16 5 N -0.59 -14.68 2.42 -172.06 -0.42 -15.09 16 6 C -0.26 -7.10 9.48 -15.06 -0.14 -7.24 16 7 H 0.07 1.79 7.98 -52.49 -0.42 1.37 16 8 C 0.01 0.23 4.55 -17.43 -0.08 0.15 16 9 N -0.89 -26.09 12.05 55.49 0.67 -25.43 16 10 Si 0.89 21.77 29.64 -169.99 -5.04 16.73 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.17 4.16 5.46 -3.49 -0.02 4.15 16 15 C -0.14 -2.64 4.62 -26.38 -0.12 -2.76 16 16 C 0.10 1.75 1.58 -67.67 -0.11 1.64 16 17 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 18 N -0.54 -8.31 4.19 -243.13 -1.02 -9.33 16 19 C 0.02 0.31 9.27 60.06 0.56 0.87 16 20 C 0.02 0.33 8.85 60.07 0.53 0.86 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 23 H 0.07 1.40 5.98 -51.93 -0.31 1.09 16 24 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.97 6.44 -51.93 -0.33 1.63 16 29 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 30 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.67 8.05 -51.93 -0.42 0.26 16 33 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16 34 H 0.07 0.98 6.57 -51.93 -0.34 0.64 16 35 H 0.06 0.67 8.01 -51.93 -0.42 0.26 16 36 H 0.02 0.28 8.12 -51.93 -0.42 -0.15 16 LS Contribution 271.57 15.07 4.09 4.09 Total: -1.00 -28.99 271.57 -7.06 -36.05 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -6.04 Total: -3.96 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.69 Total: -3.07 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.76 Total: -49.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.04 Total: 16.73 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.99 -7.06 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.533 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds