Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.49147 * 2 1 4 4 C 1.53190 * 109.49776 * 120.06198 * 2 1 3 5 5 N 1.46923 * 108.77529 * 65.35381 * 4 2 1 6 6 C 1.36942 * 120.62884 * 233.58370 * 5 4 2 7 7 H 1.08000 * 119.99676 * 28.01055 * 6 5 4 8 8 C 1.38811 * 120.00045 * 208.01168 * 6 5 4 9 9 N 1.31615 * 119.99951 * 29.39868 * 8 6 5 10 10 Si 1.86799 * 119.99989 * 209.40281 * 8 6 5 11 11 H 1.48500 * 109.47410 * 94.98821 * 10 8 6 12 12 H 1.48501 * 109.46871 * 214.99057 * 10 8 6 13 13 H 1.48503 * 109.47122 * 334.98628 * 10 8 6 14 14 C 1.46923 * 118.74377 * 53.85375 * 5 4 2 15 15 C 1.53626 * 108.54234 * 306.09817 * 14 5 4 16 16 C 1.53039 * 109.52172 * 239.91987 * 2 1 3 17 17 H 1.09001 * 109.45494 * 181.37434 * 16 2 1 18 18 N 1.46898 * 109.46089 * 61.40352 * 16 2 1 19 19 C 1.46898 * 111.00164 * 62.91707 * 18 16 2 20 20 C 1.46903 * 110.99680 * 186.87254 * 18 16 2 21 21 H 1.09000 * 109.47336 * 300.11089 * 1 2 3 22 22 H 1.09000 * 109.47340 * 60.11181 * 1 2 3 23 23 H 1.08998 * 109.46935 * 180.11194 * 1 2 3 24 24 H 1.08994 * 109.58782 * 305.56101 * 4 2 1 25 25 H 1.09002 * 109.58128 * 185.13315 * 4 2 1 26 26 H 0.97001 * 120.00301 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.58397 * 65.92871 * 14 5 4 28 28 H 1.09002 * 109.59119 * 186.35370 * 14 5 4 29 29 H 1.08996 * 109.63451 * 294.86249 * 15 14 5 30 30 H 1.09002 * 109.45796 * 174.73622 * 15 14 5 31 31 H 1.08996 * 109.47287 * 59.99925 * 19 18 16 32 32 H 1.09002 * 109.47163 * 179.97438 * 19 18 16 33 33 H 1.08996 * 109.47000 * 299.99573 * 19 18 16 34 34 H 1.08998 * 109.47347 * 66.27355 * 20 18 16 35 35 H 1.09003 * 109.46977 * 186.27433 * 20 18 16 36 36 H 1.08999 * 109.47167 * 306.26641 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6524 -2.1379 1.1698 6 6 0.9648 -2.7314 2.1947 7 1 0.3224 -2.1383 2.8287 8 6 1.0934 -4.0953 2.4186 9 7 2.2133 -4.7111 2.1038 10 14 -0.3227 -5.0567 3.1666 11 1 -1.1317 -5.6702 2.0828 12 1 0.2147 -6.1242 4.0480 13 1 -1.1770 -4.1400 3.9636 14 6 2.0203 -2.9052 -0.0279 15 6 1.5043 -2.1559 -1.2657 16 6 2.0414 -0.7230 -1.2482 17 1 3.1312 -0.7437 -1.2348 18 7 1.5801 -0.0129 -2.4485 19 6 2.1347 1.3464 -2.5019 20 6 1.9127 -0.7653 -3.6656 21 1 -0.3634 0.5155 0.8890 22 1 -0.3634 0.5121 -0.8910 23 1 -0.3633 -1.0277 0.0020 24 1 1.6004 -0.2728 2.1389 25 1 3.1275 -0.6453 1.2984 26 1 2.3031 -5.6642 2.2599 27 1 3.1048 -3.0015 -0.0813 28 1 1.5654 -3.8947 0.0180 29 1 0.4146 -2.1361 -1.2541 30 1 1.8494 -2.6627 -2.1670 31 1 3.2232 1.2941 -2.5234 32 1 1.7776 1.8495 -3.4005 33 1 1.8150 1.9040 -1.6216 34 1 1.3447 -1.6954 -3.6844 35 1 1.6611 -0.1681 -4.5421 36 1 2.9791 -0.9906 -3.6735 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606256392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = 7.559443 kcal Electronic energy + Delta-G solvation = -15359.111038 eV Core-core repulsion = 13071.125914 eV Total energy + Delta-G solvation = -2287.985124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42361 -37.25403 -34.59316 -32.59300 -31.76615 -28.38775 -27.65715 -27.11103 -24.56619 -23.17803 -22.27465 -19.59100 -18.67240 -17.12875 -16.42217 -16.06366 -15.64055 -15.52802 -15.22595 -15.04137 -14.25562 -13.83292 -13.68364 -13.36774 -13.12068 -12.79006 -12.77842 -12.61644 -12.44104 -12.20218 -12.00388 -11.98876 -11.80100 -11.68532 -11.05526 -10.88077 -10.47331 -9.19398 -8.72227 -7.90958 -5.26669 1.45510 1.48893 1.57516 2.52464 3.05157 3.21571 3.68188 3.90229 4.02480 4.33683 4.34339 4.50626 4.55311 4.57075 4.68365 4.72093 4.82065 4.88916 4.93714 4.97731 5.01450 5.10675 5.12262 5.25435 5.35386 5.39617 5.42004 5.59901 5.69298 5.77866 6.18146 6.25182 6.37422 7.12867 7.85955 8.40779 9.15022 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048524 B = 0.009098 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.900629 B = 3076.710073 C = 3241.341684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 H 0.080 0.920 4 C 0.145 3.855 5 N -0.600 5.600 6 C -0.264 4.264 7 H 0.064 0.936 8 C -0.042 4.042 9 N -0.925 5.925 10 Si 0.952 3.048 11 H -0.287 1.287 12 H -0.296 1.296 13 H -0.267 1.267 14 C 0.181 3.819 15 C -0.120 4.120 16 C 0.107 3.893 17 H 0.020 0.980 18 N -0.548 5.548 19 C 0.023 3.977 20 C 0.023 3.977 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.006 0.994 26 H 0.250 0.750 27 H -0.006 1.006 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 9.944 -9.696 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.109 4.109 3 H 0.098 0.902 4 C 0.020 3.980 5 N -0.323 5.323 6 C -0.394 4.394 7 H 0.081 0.919 8 C -0.239 4.239 9 N -0.569 5.569 10 Si 0.781 3.219 11 H -0.214 1.214 12 H -0.223 1.223 13 H -0.192 1.192 14 C 0.055 3.945 15 C -0.159 4.159 16 C -0.002 4.002 17 H 0.037 0.963 18 N -0.272 5.272 19 C -0.125 4.125 20 C -0.125 4.125 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.826 9.850 -9.639 13.902 hybrid contribution 0.653 -1.095 0.580 1.401 sum -1.173 8.755 -9.059 12.653 Atomic orbital electron populations 1.21480 0.94252 1.01008 1.00438 1.21520 0.97368 0.98306 0.93719 0.90159 1.21100 0.95430 0.84939 0.96578 1.44259 1.65272 1.06745 1.16021 1.19377 1.18240 0.91980 1.09819 0.91869 1.25628 0.98153 0.99416 1.00725 1.70321 1.23999 1.09514 1.53110 0.85480 0.80298 0.78456 0.77692 1.21412 1.22303 1.19186 1.20572 0.94742 0.94183 0.85028 1.22187 1.01093 0.94981 0.97668 1.21384 0.95091 0.93469 0.90224 0.96254 1.62049 1.59770 1.03385 1.01991 1.22459 0.96957 0.89661 1.03415 1.22433 0.98511 0.99269 0.92273 0.93982 0.91689 0.94248 0.92680 0.97638 0.94107 0.98814 0.93986 0.91889 0.91783 0.96098 0.89877 0.91009 0.91626 0.89788 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.89 8.56 71.98 0.62 -3.28 16 2 C -0.09 -3.06 2.46 -10.72 -0.03 -3.08 16 3 H 0.08 2.38 6.40 -2.39 -0.02 2.36 16 4 C 0.15 6.21 5.91 86.36 0.51 6.72 16 5 N -0.60 -30.53 2.42 -698.26 -1.69 -32.22 16 6 C -0.26 -14.77 9.48 84.03 0.80 -13.97 16 7 H 0.06 3.49 7.98 -2.91 -0.02 3.47 16 8 C -0.04 -2.41 4.55 84.86 0.39 -2.03 16 9 N -0.92 -55.79 12.05 21.65 0.26 -55.53 16 10 Si 0.95 45.43 29.64 68.60 2.03 47.46 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.18 8.89 5.46 86.51 0.47 9.36 16 15 C -0.12 -4.62 4.62 30.82 0.14 -4.48 16 16 C 0.11 3.61 1.58 44.94 0.07 3.68 16 17 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 18 N -0.55 -15.12 4.19 -923.13 -3.86 -18.98 16 19 C 0.02 0.51 9.27 127.69 1.18 1.69 16 20 C 0.02 0.55 8.85 127.69 1.13 1.68 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.06 1.98 7.65 -2.39 -0.02 1.97 16 23 H 0.04 1.57 5.98 -2.39 -0.01 1.55 16 24 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 25 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 27 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.04 2.30 6.44 -2.39 -0.02 2.28 16 29 H 0.06 2.53 6.34 -2.39 -0.02 2.51 16 30 H 0.06 2.23 6.38 -2.39 -0.02 2.21 16 31 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 33 H 0.07 1.57 6.35 -2.39 -0.02 1.56 16 34 H 0.06 1.64 6.57 -2.39 -0.02 1.62 16 35 H 0.08 1.60 8.01 -2.39 -0.02 1.58 16 36 H 0.02 0.48 8.12 -2.39 -0.02 0.47 16 Total: -1.00 -62.32 271.57 3.05 -59.27 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.03 Total: 3.70 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.28 Total: -3.71 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -5.29 Total: -106.73 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -62.32 3.05 -59.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.831 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds