Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.52172 * 2 1 4 4 C 1.53186 * 109.49976 * 239.91516 * 2 1 3 5 5 N 1.46924 * 108.77628 * 294.68495 * 4 2 1 6 6 C 1.36932 * 120.63530 * 126.38840 * 5 4 2 7 7 H 1.08001 * 120.00545 * 207.67936 * 6 5 4 8 8 C 1.38816 * 119.99937 * 27.67796 * 6 5 4 9 9 N 1.31623 * 119.99748 * 17.36640 * 8 6 5 10 10 Si 1.86801 * 120.00255 * 197.37215 * 8 6 5 11 11 H 1.48500 * 109.46854 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47358 * 119.99645 * 10 8 6 13 13 H 1.48496 * 109.47069 * 239.99846 * 10 8 6 14 14 C 1.46938 * 118.76383 * 306.41310 * 5 4 2 15 15 C 1.53188 * 108.77233 * 53.55390 * 14 5 4 16 16 C 1.53043 * 109.34031 * 305.41216 * 15 14 5 17 17 H 1.08996 * 109.45890 * 301.33226 * 16 15 14 18 18 N 1.46897 * 109.46016 * 181.37087 * 16 15 14 19 19 C 1.46896 * 111.00305 * 60.00262 * 18 16 15 20 20 C 1.46906 * 111.00024 * 183.96186 * 18 16 15 21 21 H 1.09004 * 109.47057 * 299.92130 * 1 2 3 22 22 H 1.08995 * 109.46978 * 59.92038 * 1 2 3 23 23 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.58491 * 54.46801 * 4 2 1 25 25 H 1.08993 * 109.58958 * 174.75481 * 4 2 1 26 26 H 0.96998 * 119.99441 * 180.02562 * 9 8 6 27 27 H 1.09001 * 109.55730 * 293.78285 * 14 5 4 28 28 H 1.09003 * 109.61413 * 173.36068 * 14 5 4 29 29 H 1.09001 * 109.49859 * 185.44836 * 15 14 5 30 30 H 1.09001 * 109.50072 * 65.38379 * 15 14 5 31 31 H 1.09004 * 109.47106 * 59.99784 * 19 18 16 32 32 H 1.08992 * 109.47420 * 179.97438 * 19 18 16 33 33 H 1.09003 * 109.46701 * 300.00115 * 19 18 16 34 34 H 1.08992 * 109.47440 * 59.99599 * 20 18 16 35 35 H 1.09001 * 109.47156 * 180.02562 * 20 18 16 36 36 H 1.09001 * 109.46376 * 300.00044 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1694 6 6 0.9636 -2.7314 -2.1940 7 1 0.3077 -3.5655 -1.9924 8 6 1.1091 -2.2608 -3.4918 9 7 2.1339 -1.4959 -3.8034 10 14 -0.1495 -2.7130 -4.7960 11 1 -1.1968 -3.5771 -4.1946 12 1 -0.7743 -1.4765 -5.3308 13 1 0.5223 -3.4453 -5.8994 14 6 2.0133 -2.9044 0.0310 15 6 1.5030 -2.1557 1.2662 16 6 2.0408 -0.7230 1.2485 17 1 3.1305 -0.7443 1.2354 18 7 1.5799 -0.0123 2.4486 19 6 2.0535 -0.6783 3.6693 20 6 1.9989 1.3954 2.4204 21 1 -0.3633 0.5126 0.8907 22 1 -0.3633 0.5150 -0.8892 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6007 -0.2732 -2.1388 25 1 3.1272 -0.6442 -1.2992 26 1 2.2353 -1.1667 -4.7102 27 1 3.0972 -3.0052 0.0867 28 1 1.5543 -3.8921 -0.0132 29 1 1.8480 -2.6626 2.1673 30 1 0.4132 -2.1353 1.2549 31 1 3.1433 -0.6990 3.6724 32 1 1.6984 -0.1314 4.5427 33 1 1.6706 -1.6984 3.6985 34 1 1.5764 1.8827 1.5418 35 1 1.6450 1.8980 3.3206 36 1 3.0867 1.4498 2.3782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606256393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = 8.650838 kcal Electronic energy + Delta-G solvation = -15398.951478 eV Core-core repulsion = 13111.013680 eV Total energy + Delta-G solvation = -2287.937797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43160 -37.25741 -34.37871 -33.12313 -31.32928 -28.37377 -27.69710 -27.12440 -24.61226 -23.04061 -22.26658 -19.71541 -18.57677 -17.15613 -16.44078 -16.04632 -15.66757 -15.45859 -15.15538 -15.05010 -14.23760 -13.79512 -13.59565 -13.29646 -13.11378 -12.87462 -12.78416 -12.67892 -12.37023 -12.24698 -12.00350 -11.94276 -11.70640 -11.61730 -11.05543 -10.87627 -10.51318 -9.19469 -8.65586 -7.85252 -5.29318 1.46098 1.48321 1.58624 2.52643 3.06357 3.31269 3.70466 3.92585 4.03830 4.34223 4.37086 4.52236 4.54810 4.59053 4.70291 4.70775 4.80145 4.87517 4.95384 4.99725 5.07637 5.09157 5.13960 5.30724 5.36233 5.40587 5.53246 5.61347 5.69803 5.78516 6.19075 6.25715 6.41714 7.17020 7.88461 8.40746 9.21460 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052477 B = 0.009062 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.436983 B = 3089.043528 C = 3247.018299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 H 0.065 0.935 4 C 0.185 3.815 5 N -0.604 5.604 6 C -0.254 4.254 7 H 0.066 0.934 8 C -0.052 4.052 9 N -0.937 5.937 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.291 1.291 13 H -0.293 1.293 14 C 0.141 3.859 15 C -0.114 4.114 16 C 0.107 3.893 17 H 0.018 0.982 18 N -0.548 5.548 19 C 0.022 3.978 20 C 0.022 3.978 21 H 0.065 0.935 22 H 0.027 0.973 23 H 0.045 0.955 24 H 0.056 0.944 25 H -0.014 1.014 26 H 0.248 0.752 27 H 0.008 0.992 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 3.389 12.812 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 H 0.083 0.917 4 C 0.058 3.942 5 N -0.327 5.327 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.247 4.247 9 N -0.583 5.583 10 Si 0.792 3.208 11 H -0.190 1.190 12 H -0.218 1.218 13 H -0.220 1.220 14 C 0.015 3.985 15 C -0.153 4.153 16 C -0.002 4.002 17 H 0.036 0.964 18 N -0.272 5.272 19 C -0.125 4.125 20 C -0.126 4.126 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.004 0.996 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.812 3.418 12.689 13.265 hybrid contribution 0.750 -0.140 -1.213 1.432 sum -1.062 3.278 11.476 11.982 Atomic orbital electron populations 1.21425 0.94332 1.01135 0.99673 1.21701 0.97390 0.98102 0.94861 0.91668 1.20597 0.94061 0.84089 0.95405 1.44244 1.65272 1.06456 1.16725 1.19520 1.17598 1.14694 0.86622 0.91598 1.25745 0.98768 1.01221 0.98924 1.70200 1.29260 1.40150 1.18723 0.85264 0.79176 0.77299 0.79099 1.19048 1.21777 1.22026 1.21055 0.95965 0.94690 0.86765 1.21995 1.01308 0.94310 0.97686 1.21376 0.95019 0.94204 0.89578 0.96441 1.62047 1.60195 1.02875 1.02069 1.22464 0.97588 1.00426 0.92061 1.22445 0.97893 0.89023 1.03227 0.91620 0.95393 0.93598 0.92576 0.99592 0.94243 0.97385 0.92429 0.90515 0.91600 0.96093 0.89935 0.90923 0.91596 0.89757 0.96198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 8.56 71.98 0.62 -3.49 16 2 C -0.10 -3.91 2.27 -10.71 -0.02 -3.93 16 3 H 0.07 2.38 6.27 -2.39 -0.01 2.36 16 4 C 0.18 9.20 4.71 86.36 0.41 9.60 16 5 N -0.60 -30.82 2.43 -699.09 -1.70 -32.52 16 6 C -0.25 -14.14 9.58 84.04 0.81 -13.34 16 7 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 8 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 9 N -0.94 -56.39 11.19 21.65 0.24 -56.15 16 10 Si 0.96 45.59 29.59 68.60 2.03 47.62 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 14 C 0.14 5.99 6.52 86.36 0.56 6.56 16 15 C -0.11 -3.94 4.82 30.67 0.15 -3.79 16 16 C 0.11 3.65 1.60 44.95 0.07 3.72 16 17 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 18 N -0.55 -15.34 4.19 -923.12 -3.86 -19.20 16 19 C 0.02 0.50 9.21 127.69 1.18 1.68 16 20 C 0.02 0.54 9.11 127.69 1.16 1.70 16 21 H 0.06 2.18 7.65 -2.38 -0.02 2.16 16 22 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.04 1.90 5.97 -2.39 -0.01 1.88 16 24 H 0.06 3.16 6.04 -2.39 -0.01 3.14 16 25 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 29 H 0.08 2.22 6.33 -2.39 -0.02 2.21 16 30 H 0.07 2.39 6.34 -2.39 -0.02 2.37 16 31 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 33 H 0.07 1.60 6.27 -2.39 -0.01 1.58 16 34 H 0.07 1.70 6.20 -2.39 -0.01 1.69 16 35 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 36 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -62.28 270.28 3.08 -59.20 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.03 Total: 4.85 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.34 Total: -3.80 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -5.32 Total: -107.87 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -62.28 3.08 -59.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.854 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds