Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 108.98163 * 2 1 4 4 C 1.46136 * 108.99365 * 118.84014 * 2 1 3 5 5 N 1.48108 * 112.19147 * 181.41234 * 4 2 1 6 6 C 1.46894 * 111.00325 * 156.48879 * 5 4 2 7 7 C 1.44265 * 109.97523 * 279.71706 * 5 4 2 8 8 C 1.53934 * 112.55037 * 93.90281 * 7 5 4 9 9 N 1.48194 * 112.77163 * 318.37488 * 8 7 5 10 10 C 1.46911 * 110.99671 * 191.68782 * 9 8 7 11 11 C 1.50701 * 109.46779 * 298.24141 * 10 9 8 12 12 H 1.07998 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99624 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00138 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46939 * 89.99769 * 15 13 11 17 17 H 1.48507 * 109.47064 * 209.99526 * 15 13 11 18 18 H 1.48494 * 109.46953 * 329.99500 * 15 13 11 19 19 C 1.44250 * 114.27275 * 318.13742 * 9 8 7 20 20 H 1.08997 * 109.47209 * 301.15870 * 1 2 3 21 21 H 1.08993 * 109.47033 * 61.16421 * 1 2 3 22 22 H 1.09000 * 109.46922 * 181.16046 * 1 2 3 23 23 H 1.09011 * 108.93841 * 302.10722 * 4 2 1 24 24 H 1.09000 * 108.94033 * 60.70902 * 4 2 1 25 25 H 1.09006 * 109.47265 * 59.99481 * 6 5 4 26 26 H 1.08999 * 109.47407 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46967 * 299.99709 * 6 5 4 28 28 H 1.08993 * 108.86680 * 333.10661 * 7 5 4 29 29 H 1.09002 * 108.86466 * 214.69175 * 7 5 4 30 30 H 1.09003 * 108.81462 * 197.52640 * 8 7 5 31 31 H 1.09002 * 108.73469 * 79.16964 * 8 7 5 32 32 H 1.08998 * 109.46985 * 58.23585 * 10 9 8 33 33 H 1.08994 * 109.47215 * 178.23957 * 10 9 8 34 34 H 0.97003 * 119.99612 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.60634 * 333.64741 * 19 9 8 36 36 H 1.09001 * 109.74719 * 213.22865 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8846 1.0307 0.0000 4 6 2.0057 -0.6665 1.2104 5 7 3.4840 -0.6768 1.2992 6 6 3.9268 -0.8194 2.6925 7 6 4.0199 -1.7333 0.4758 8 6 4.4011 -1.2472 -0.9341 9 7 3.4010 -0.3176 -1.5103 10 6 3.6509 -0.0964 -2.9410 11 6 5.0067 0.5362 -3.1221 12 1 5.6211 0.7526 -2.2607 13 6 5.4622 0.8396 -4.3876 14 7 4.7138 0.5765 -5.4365 15 14 7.1425 1.6243 -4.6121 16 1 8.1683 0.5618 -4.7672 17 1 7.1305 2.4814 -5.8248 18 1 7.4645 2.4535 -3.4231 19 6 2.0305 -0.7031 -1.2785 20 1 -0.3633 0.5317 0.8794 21 1 -0.3633 0.4956 -0.9002 22 1 -0.3633 -1.0275 0.0208 23 1 1.6026 -0.1489 2.0810 24 1 1.6439 -1.6947 1.2135 25 1 3.5456 -1.7554 3.1010 26 1 5.0162 -0.8236 2.7290 27 1 3.5472 0.0154 3.2816 28 1 3.2743 -2.5233 0.3867 29 1 4.9071 -2.1417 0.9597 30 1 4.4963 -2.1123 -1.5904 31 1 5.3640 -0.7391 -0.8808 32 1 3.6221 -1.0508 -3.4667 33 1 2.8845 0.5646 -3.3457 34 1 5.0346 0.7897 -6.3269 35 1 1.9714 -1.7837 -1.1488 36 1 1.4149 -0.4023 -2.1262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606256502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 10.731922 kcal Electronic energy + Delta-G solvation = -14955.287495 eV Core-core repulsion = 12667.439941 eV Total energy + Delta-G solvation = -2287.847555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03529 -35.43898 -34.07620 -32.32530 -28.99602 -27.09771 -26.78153 -24.59535 -23.50343 -21.56291 -19.80610 -19.21048 -16.40880 -15.60072 -15.43394 -14.75957 -14.36536 -14.15989 -13.44504 -13.07036 -12.93917 -12.56852 -12.41574 -12.09819 -11.76239 -11.52175 -11.26277 -10.89874 -10.85933 -10.66700 -10.37122 -10.32533 -10.25472 -10.05429 -9.61117 -9.03280 -8.35881 -7.95111 -6.87731 -5.94663 -3.95040 3.36822 3.42764 3.48333 4.15879 4.50231 4.95444 5.19878 5.32891 5.34563 5.40279 5.47647 5.59548 5.65536 5.70227 5.85132 5.90761 5.96775 5.99377 6.06726 6.19198 6.25547 6.38265 6.47756 6.64166 6.85979 6.89241 7.40477 7.42139 7.45274 7.53408 7.94514 8.26427 8.38493 8.78292 9.14133 9.69153 11.16227 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036518 B = 0.008467 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.555651 B = 3306.307456 C = 3786.290885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.087 0.913 4 C 0.074 3.926 5 N -0.523 5.523 6 C 0.029 3.971 7 C 0.056 3.944 8 C 0.086 3.914 9 N -0.541 5.541 10 C 0.198 3.802 11 C -0.502 4.502 12 H 0.064 0.936 13 C 0.053 3.947 14 N -0.902 5.902 15 Si 0.896 3.104 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.077 3.923 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.076 0.924 32 H -0.014 1.014 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.018 0.982 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -4.007 12.695 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.054 4.054 5 N -0.246 5.246 6 C -0.119 4.119 7 C -0.073 4.073 8 C -0.042 4.042 9 N -0.265 5.265 10 C 0.073 3.927 11 C -0.541 4.541 12 H 0.082 0.918 13 C -0.148 4.148 14 N -0.542 5.542 15 Si 0.724 3.276 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.053 4.053 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.003 0.997 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.801 -3.130 12.555 13.802 hybrid contribution 0.500 -1.150 -0.373 1.308 sum -4.301 -4.280 12.182 13.610 Atomic orbital electron populations 1.21827 0.95803 1.01016 1.01542 1.20218 0.93637 1.02390 0.94894 0.89454 1.21070 0.87189 0.98528 0.98573 1.61398 1.08618 1.47126 1.07486 1.22436 1.00841 0.99327 0.89343 1.22056 0.98503 0.91512 0.95266 1.22203 0.97047 0.93857 0.91106 1.60385 1.00162 1.47359 1.18631 1.19763 0.97346 0.95018 0.80550 1.21238 1.01510 1.39137 0.92216 0.91784 1.24999 0.97611 0.96172 0.95993 1.69966 1.37183 1.48790 0.98246 0.86525 0.84218 0.79255 0.77586 1.20875 1.21358 1.19753 1.21679 0.91517 0.95721 0.96344 0.93175 0.92355 0.93444 0.92124 0.95742 0.96579 0.91542 0.91728 0.95500 0.91915 0.95792 0.90565 0.99675 0.95265 0.93077 0.96360 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.01 37.16 0.33 -1.50 16 2 C -0.09 -1.47 2.60 -93.22 -0.24 -1.71 16 3 H 0.09 1.60 8.12 -51.93 -0.42 1.18 16 4 C 0.07 1.08 4.19 -6.42 -0.03 1.05 16 5 N -0.52 -8.33 4.66 -247.54 -1.15 -9.48 16 6 C 0.03 0.36 9.24 60.06 0.56 0.91 16 7 C 0.06 0.91 5.13 -4.75 -0.02 0.89 16 8 C 0.09 1.76 5.28 -2.62 -0.01 1.75 16 9 N -0.54 -12.17 4.17 -235.70 -0.98 -13.15 16 10 C 0.20 5.32 4.59 -4.97 -0.02 5.30 16 11 C -0.50 -14.47 8.61 -34.44 -0.30 -14.77 16 12 H 0.06 1.84 6.83 -52.49 -0.36 1.48 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 15 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.08 1.47 4.77 -4.59 -0.02 1.45 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.78 7.79 -51.92 -0.40 0.38 16 24 H 0.02 0.35 7.38 -51.93 -0.38 -0.04 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 27 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 28 H 0.03 0.43 6.54 -51.93 -0.34 0.09 16 29 H 0.06 0.91 7.49 -51.93 -0.39 0.52 16 30 H 0.02 0.50 7.99 -51.93 -0.41 0.09 16 31 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 32 H -0.01 -0.42 8.07 -51.93 -0.42 -0.83 16 33 H 0.03 0.84 7.78 -51.93 -0.40 0.43 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.34 6.96 -51.93 -0.36 -0.03 16 36 H 0.06 1.21 7.23 -51.93 -0.38 0.83 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -30.52 277.85 -8.38 -38.90 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -6.29 Total: -5.74 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 0.14 Total: -5.20 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.40 Total: -49.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.52 -8.38 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.629 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds