Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 108.98163 * 2 1 4 4 C 1.46136 * 108.99365 * 118.84014 * 2 1 3 5 5 N 1.48108 * 112.19147 * 181.41234 * 4 2 1 6 6 C 1.46894 * 111.00325 * 156.48879 * 5 4 2 7 7 C 1.44265 * 109.97523 * 279.71706 * 5 4 2 8 8 C 1.53934 * 112.55037 * 93.90281 * 7 5 4 9 9 N 1.48194 * 112.77163 * 318.37488 * 8 7 5 10 10 C 1.46911 * 110.99671 * 191.68782 * 9 8 7 11 11 C 1.50701 * 109.46779 * 298.24141 * 10 9 8 12 12 H 1.07998 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99624 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00138 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46939 * 89.99769 * 15 13 11 17 17 H 1.48507 * 109.47064 * 209.99526 * 15 13 11 18 18 H 1.48494 * 109.46953 * 329.99500 * 15 13 11 19 19 C 1.44250 * 114.27275 * 318.13742 * 9 8 7 20 20 H 1.08997 * 109.47209 * 301.15870 * 1 2 3 21 21 H 1.08993 * 109.47033 * 61.16421 * 1 2 3 22 22 H 1.09000 * 109.46922 * 181.16046 * 1 2 3 23 23 H 1.09011 * 108.93841 * 302.10722 * 4 2 1 24 24 H 1.09000 * 108.94033 * 60.70902 * 4 2 1 25 25 H 1.09006 * 109.47265 * 59.99481 * 6 5 4 26 26 H 1.08999 * 109.47407 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46967 * 299.99709 * 6 5 4 28 28 H 1.08993 * 108.86680 * 333.10661 * 7 5 4 29 29 H 1.09002 * 108.86466 * 214.69175 * 7 5 4 30 30 H 1.09003 * 108.81462 * 197.52640 * 8 7 5 31 31 H 1.09002 * 108.73469 * 79.16964 * 8 7 5 32 32 H 1.08998 * 109.46985 * 58.23585 * 10 9 8 33 33 H 1.08994 * 109.47215 * 178.23957 * 10 9 8 34 34 H 0.97003 * 119.99612 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.60634 * 333.64741 * 19 9 8 36 36 H 1.09001 * 109.74719 * 213.22865 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8846 1.0307 0.0000 4 6 2.0057 -0.6665 1.2104 5 7 3.4840 -0.6768 1.2992 6 6 3.9268 -0.8194 2.6925 7 6 4.0199 -1.7333 0.4758 8 6 4.4011 -1.2472 -0.9341 9 7 3.4010 -0.3176 -1.5103 10 6 3.6509 -0.0964 -2.9410 11 6 5.0067 0.5362 -3.1221 12 1 5.6211 0.7526 -2.2607 13 6 5.4622 0.8396 -4.3876 14 7 4.7138 0.5765 -5.4365 15 14 7.1425 1.6243 -4.6121 16 1 8.1683 0.5618 -4.7672 17 1 7.1305 2.4814 -5.8248 18 1 7.4645 2.4535 -3.4231 19 6 2.0305 -0.7031 -1.2785 20 1 -0.3633 0.5317 0.8794 21 1 -0.3633 0.4956 -0.9002 22 1 -0.3633 -1.0275 0.0208 23 1 1.6026 -0.1489 2.0810 24 1 1.6439 -1.6947 1.2135 25 1 3.5456 -1.7554 3.1010 26 1 5.0162 -0.8236 2.7290 27 1 3.5472 0.0154 3.2816 28 1 3.2743 -2.5233 0.3867 29 1 4.9071 -2.1417 0.9597 30 1 4.4963 -2.1123 -1.5904 31 1 5.3640 -0.7391 -0.8808 32 1 3.6221 -1.0508 -3.4667 33 1 2.8845 0.5646 -3.3457 34 1 5.0346 0.7897 -6.3269 35 1 1.9714 -1.7837 -1.1488 36 1 1.4149 -0.4023 -2.1262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606256502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -10.947190 kcal Electronic energy + Delta-G solvation = -14956.227572 eV Core-core repulsion = 12667.439941 eV Total energy + Delta-G solvation = -2288.787631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41262 -37.05727 -35.43760 -34.44068 -30.56769 -28.94540 -27.85145 -26.20582 -25.07224 -23.27625 -21.12988 -20.77082 -18.48465 -17.20891 -16.88263 -16.35674 -15.91176 -15.76158 -14.77483 -14.59247 -14.49648 -14.00554 -13.75383 -13.61997 -13.28087 -12.98335 -12.73085 -12.67127 -12.55511 -12.20732 -12.05536 -11.90728 -11.65727 -11.50467 -11.37506 -11.06658 -10.60486 -9.12634 -8.71665 -8.18751 -6.28951 1.40281 1.42300 1.54414 2.41483 2.98555 3.12740 3.37529 3.96920 4.04405 4.14238 4.23000 4.32804 4.48667 4.60328 4.62270 4.69267 4.78766 4.81570 4.84244 4.91366 4.98519 5.06475 5.08604 5.21400 5.28967 5.37440 5.40431 5.55462 5.69629 6.10992 6.24641 6.30906 6.48295 6.88145 6.91265 7.41154 8.92120 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036518 B = 0.008467 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.555651 B = 3306.307456 C = 3786.290885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.060 0.940 4 C 0.073 3.927 5 N -0.551 5.551 6 C 0.031 3.969 7 C 0.068 3.932 8 C 0.085 3.915 9 N -0.547 5.547 10 C 0.214 3.786 11 C -0.520 4.520 12 H 0.061 0.939 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.073 3.927 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.054 0.946 32 H -0.045 1.045 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.026 0.974 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 -4.095 14.766 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.054 4.054 5 N -0.275 5.275 6 C -0.116 4.116 7 C -0.061 4.061 8 C -0.043 4.043 9 N -0.272 5.272 10 C 0.088 3.912 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.056 4.056 20 H 0.092 0.908 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.028 0.972 31 H 0.073 0.927 32 H -0.027 1.027 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.619 -3.226 14.660 15.705 hybrid contribution 0.399 -1.130 -1.018 1.572 sum -4.219 -4.356 13.642 14.929 Atomic orbital electron populations 1.21765 0.93093 1.02240 1.02360 1.20133 0.95867 1.00371 0.93869 0.92143 1.21079 0.86639 0.99251 0.98382 1.61293 1.09518 1.47216 1.09486 1.22463 1.01129 1.00736 0.87304 1.21854 0.99844 0.91633 0.92787 1.22229 0.95736 0.92511 0.93792 1.60374 1.02407 1.48872 1.15510 1.19409 0.95985 0.92662 0.83185 1.21492 1.02280 1.39595 0.92470 0.92110 1.25944 1.01900 0.96484 0.95514 1.70096 1.39248 1.49588 0.98822 0.85373 0.78968 0.78458 0.77757 1.19727 1.20609 1.19020 1.21823 0.89388 0.96610 0.97752 0.90814 0.93083 0.92057 0.89700 0.94578 0.94809 0.91290 0.90576 0.94640 0.89747 0.97199 0.92736 1.02743 0.98102 0.92728 0.95532 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.01 71.98 0.65 -2.55 16 2 C -0.08 -2.55 2.60 -12.48 -0.03 -2.58 16 3 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 4 C 0.07 1.93 4.19 83.96 0.35 2.28 16 5 N -0.55 -16.27 4.66 -937.08 -4.37 -20.64 16 6 C 0.03 0.67 9.24 127.69 1.18 1.85 16 7 C 0.07 2.12 5.13 87.11 0.45 2.57 16 8 C 0.09 3.56 5.28 86.37 0.46 4.01 16 9 N -0.55 -25.40 4.17 -899.63 -3.75 -29.15 16 10 C 0.21 12.09 4.59 85.56 0.39 12.48 16 11 C -0.52 -30.90 8.61 25.60 0.22 -30.68 16 12 H 0.06 3.58 6.83 -2.91 -0.02 3.56 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 15 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.07 2.83 4.77 87.22 0.42 3.24 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.86 7.79 -2.38 -0.02 1.84 16 24 H 0.04 0.89 7.38 -2.39 -0.02 0.87 16 25 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.07 1.44 7.97 -2.39 -0.02 1.42 16 27 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 28 H 0.04 1.05 6.54 -2.39 -0.02 1.03 16 29 H 0.08 2.25 7.49 -2.39 -0.02 2.23 16 30 H 0.01 0.43 7.99 -2.39 -0.02 0.41 16 31 H 0.05 2.46 6.95 -2.39 -0.02 2.44 16 32 H -0.04 -2.75 8.07 -2.39 -0.02 -2.77 16 33 H 0.00 0.06 7.78 -2.39 -0.02 0.04 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.03 0.97 6.96 -2.39 -0.02 0.95 16 36 H 0.05 1.90 7.23 -2.39 -0.02 1.89 16 Total: -1.00 -67.22 277.85 -0.24 -67.46 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.02 Total: 1.39 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.54 Total: -8.96 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -7.83 Total: -107.69 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.22 -0.24 -67.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.517 kcal (2) G-P(sol) polarization free energy of solvation -67.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds