Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.64504 * 2 1 4 4 C 1.54523 * 109.55776 * 239.73628 * 2 1 3 5 5 N 1.40085 * 111.44886 * 164.12715 * 4 2 1 6 6 C 1.46897 * 110.99837 * 188.18136 * 5 4 2 7 7 C 1.47680 * 114.57328 * 61.48117 * 5 4 2 8 8 C 1.50780 * 108.09561 * 278.67399 * 7 5 4 9 9 N 1.47743 * 111.91003 * 94.62034 * 8 7 5 10 10 C 1.46898 * 111.00218 * 84.94433 * 9 8 7 11 11 C 1.50699 * 109.47348 * 66.04351 * 10 9 8 12 12 H 1.08004 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00214 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99913 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47058 * 59.99960 * 15 13 11 17 17 H 1.48505 * 109.46978 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46834 * 299.99711 * 15 13 11 19 19 C 1.48071 * 113.78697 * 318.87727 * 9 8 7 20 20 H 1.08995 * 109.47176 * 180.26256 * 1 2 3 21 21 H 1.08996 * 109.46867 * 300.26836 * 1 2 3 22 22 H 1.09001 * 109.46528 * 60.26276 * 1 2 3 23 23 H 1.09002 * 109.07452 * 43.63934 * 4 2 1 24 24 H 1.08995 * 109.07262 * 284.61253 * 4 2 1 25 25 H 1.09000 * 109.47090 * 60.00166 * 6 5 4 26 26 H 1.09003 * 109.47012 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.47522 * 299.99816 * 6 5 4 28 28 H 1.09001 * 109.74379 * 38.32402 * 7 5 4 29 29 H 1.08997 * 109.73793 * 158.97935 * 7 5 4 30 30 H 1.09000 * 108.99624 * 215.24601 * 8 7 5 31 31 H 1.09005 * 108.99337 * 334.07342 * 8 7 5 32 32 H 1.08999 * 109.47174 * 186.05076 * 10 9 8 33 33 H 1.09007 * 109.46800 * 306.04658 * 10 9 8 34 34 H 0.97004 * 119.99762 * 179.97438 * 14 13 11 35 35 H 1.09003 * 108.78736 * 79.17775 * 19 9 8 36 36 H 1.09001 * 108.79377 * 197.50745 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0265 0.0000 4 6 2.0473 -0.7338 -1.2576 5 7 3.4005 -0.4575 -1.4917 6 6 3.8318 -0.9984 -2.7876 7 6 4.3107 -0.8854 -0.4102 8 6 4.2810 0.1658 0.6703 9 7 3.3102 -0.1642 1.7339 10 6 3.9095 -1.0559 2.7357 11 6 5.0070 -0.3255 3.4659 12 1 5.2360 0.6988 3.2116 13 6 5.7186 -0.9650 4.4586 14 7 5.4401 -2.2126 4.7680 15 14 7.0785 -0.0594 5.3643 16 1 6.5123 1.1349 6.0412 17 1 7.6845 -0.9610 6.3769 18 1 8.1194 0.3678 4.3951 19 6 2.0338 -0.7175 1.2268 20 1 -0.3633 -1.0276 0.0047 21 1 -0.3633 0.5180 0.8875 22 1 -0.3632 0.5098 -0.8924 23 1 1.4640 -0.4147 -2.1214 24 1 1.9216 -1.8078 -1.1203 25 1 3.2402 -0.5477 -3.5844 26 1 4.8859 -0.7694 -2.9442 27 1 3.6892 -2.0790 -2.7959 28 1 3.9767 -1.8402 -0.0041 29 1 5.3238 -0.9854 -0.7997 30 1 5.2745 0.2502 1.1106 31 1 4.0075 1.1231 0.2264 32 1 3.1454 -1.3688 3.4471 33 1 4.3247 -1.9330 2.2392 34 1 5.9411 -2.6626 5.4662 35 1 2.1795 -1.7701 0.9837 36 1 1.2811 -0.6400 2.0114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606256508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = -12.058327 kcal Electronic energy + Delta-G solvation = -14990.530565 eV Core-core repulsion = 12701.694751 eV Total energy + Delta-G solvation = -2288.835814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75671 -37.06899 -35.30696 -34.37364 -30.62670 -28.88262 -28.04356 -26.28636 -25.19385 -23.37759 -21.41588 -20.49566 -18.44397 -17.16430 -16.87780 -16.54030 -16.41758 -15.73387 -15.25593 -14.54984 -14.13375 -13.84371 -13.73988 -13.46507 -13.40696 -12.99297 -12.89851 -12.69730 -12.58772 -12.46924 -12.22144 -11.85486 -11.81522 -11.43544 -11.36629 -11.18803 -10.61636 -9.34973 -8.80942 -8.19858 -6.30833 1.41140 1.44926 1.52792 2.40480 2.96287 3.11570 3.26486 3.76303 3.94148 4.04666 4.28108 4.31602 4.45382 4.53859 4.59220 4.64857 4.70939 4.80851 4.82637 4.85078 4.94841 4.99083 5.15026 5.18928 5.20917 5.30601 5.39323 5.44455 5.66471 6.02186 6.12141 6.38093 6.41534 6.69674 6.86173 7.39088 8.90675 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.008074 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.456356 B = 3467.234568 C = 3832.643487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 H 0.080 0.920 4 C 0.080 3.920 5 N -0.561 5.561 6 C 0.031 3.969 7 C 0.047 3.953 8 C 0.072 3.928 9 N -0.554 5.554 10 C 0.214 3.786 11 C -0.522 4.522 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.066 3.934 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.004 0.996 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.081 0.919 32 H -0.005 1.005 33 H -0.042 1.042 34 H 0.264 0.736 35 H 0.001 0.999 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 3.536 -13.431 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.050 4.050 5 N -0.285 5.285 6 C -0.117 4.117 7 C -0.082 4.082 8 C -0.056 4.056 9 N -0.279 5.279 10 C 0.088 3.912 11 C -0.560 4.560 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.577 5.577 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.061 4.061 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.022 0.978 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.013 0.987 33 H -0.024 1.024 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.826 4.280 -13.113 14.974 hybrid contribution 0.845 -1.828 0.611 2.105 sum -4.981 2.451 -12.502 13.680 Atomic orbital electron populations 1.21705 0.92226 1.02148 1.02873 1.21118 0.97093 1.00199 0.92194 0.90190 1.21150 0.88788 0.96240 0.98773 1.59138 1.03081 1.62891 1.03371 1.22427 1.02197 0.97097 0.89932 1.22281 0.96835 0.96346 0.92721 1.21810 0.95915 0.98217 0.89699 1.62098 1.04674 1.46719 1.14415 1.19286 0.92969 0.89690 0.89288 1.21443 1.16845 0.99187 1.18555 0.91761 1.25951 1.00201 0.95705 0.97883 1.70097 1.42750 1.12637 1.32230 0.85410 0.78681 0.78232 0.78142 1.19315 1.20835 1.19022 1.21959 0.91670 0.95172 0.97336 0.92594 0.92290 0.90333 0.88520 0.97810 0.89477 0.90769 0.96226 0.97030 0.89859 0.92048 0.90121 0.98685 1.02405 0.92705 0.98043 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.91 71.98 0.64 -2.30 16 2 C -0.09 -2.56 2.47 -10.99 -0.03 -2.59 16 3 H 0.08 2.54 7.18 -2.39 -0.02 2.52 16 4 C 0.08 2.16 4.33 88.05 0.38 2.54 16 5 N -0.56 -16.16 4.23 -938.59 -3.97 -20.13 16 6 C 0.03 0.67 9.47 127.69 1.21 1.88 16 7 C 0.05 1.66 5.27 85.43 0.45 2.11 16 8 C 0.07 2.91 5.05 85.42 0.43 3.34 16 9 N -0.55 -25.48 4.73 -904.03 -4.27 -29.76 16 10 C 0.21 11.97 4.61 85.56 0.39 12.36 16 11 C -0.52 -30.42 8.18 25.60 0.21 -30.21 16 12 H 0.06 3.66 7.38 -2.91 -0.02 3.64 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 C 0.07 2.56 4.50 85.36 0.38 2.95 16 20 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.10 2.07 7.86 -2.39 -0.02 2.05 16 24 H 0.00 0.12 7.59 -2.39 -0.02 0.10 16 25 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16 26 H 0.07 1.52 7.85 -2.39 -0.02 1.50 16 27 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.01 0.47 6.27 -2.39 -0.01 0.46 16 29 H 0.08 2.72 7.65 -2.39 -0.02 2.70 16 30 H 0.06 2.76 6.56 -2.39 -0.02 2.74 16 31 H 0.08 3.05 7.19 -2.38 -0.02 3.04 16 32 H 0.00 -0.30 8.03 -2.39 -0.02 -0.32 16 33 H -0.04 -2.53 7.62 -2.38 -0.02 -2.54 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.00 0.06 6.41 -2.39 -0.02 0.04 16 36 H 0.06 2.30 7.69 -2.39 -0.02 2.28 16 Total: -1.00 -65.23 275.53 -0.37 -65.60 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.02 Total: 4.11 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.54 Total: -9.43 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -7.96 Total: -107.25 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.23 -0.37 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606256508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -65.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds