Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47058 * 2 1 4 4 C 1.50695 * 109.47215 * 239.99453 * 2 1 3 5 5 H 1.07996 * 120.00297 * 239.99985 * 4 2 1 6 6 C 1.37882 * 119.99953 * 60.00067 * 4 2 1 7 7 N 1.31514 * 119.99751 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00022 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47179 * 120.00444 * 8 6 4 11 11 H 1.48504 * 109.47027 * 239.99972 * 8 6 4 12 12 N 1.46906 * 109.47147 * 119.99788 * 2 1 3 13 13 C 1.48558 * 111.00058 * 179.87489 * 12 2 1 14 14 C 1.54379 * 104.59176 * 159.03792 * 13 12 2 15 15 H 1.09003 * 110.32409 * 217.24772 * 14 13 12 16 16 N 1.46900 * 110.32336 * 95.14629 * 14 13 12 17 17 C 1.54259 * 105.06460 * 336.14696 * 14 13 12 18 18 C 1.53004 * 110.32352 * 118.89551 * 17 14 13 19 19 C 1.52998 * 110.32448 * 241.00415 * 17 14 13 20 20 C 1.48560 * 110.99659 * 295.29776 * 12 2 1 21 21 H 1.08999 * 109.47015 * 300.00025 * 1 2 3 22 22 H 1.08992 * 109.46965 * 60.00824 * 1 2 3 23 23 H 1.09009 * 109.46657 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99830 * 179.97438 * 7 6 4 25 25 H 1.08999 * 110.41183 * 277.81569 * 13 12 2 26 26 H 1.08998 * 110.41028 * 40.14062 * 13 12 2 27 27 H 1.00902 * 110.99971 * 61.45022 * 16 14 13 28 28 H 1.00893 * 111.00323 * 185.40030 * 16 14 13 29 29 H 1.08997 * 109.46690 * 59.99821 * 18 17 14 30 30 H 1.08997 * 109.46961 * 180.02562 * 18 17 14 31 31 H 1.09008 * 109.46966 * 300.00100 * 18 17 14 32 32 H 1.08994 * 109.47088 * 60.00037 * 19 17 14 33 33 H 1.09001 * 109.46886 * 179.97438 * 19 17 14 34 34 H 1.09004 * 109.46686 * 299.99948 * 19 17 14 35 35 H 1.08996 * 110.41118 * 319.73083 * 20 12 2 36 36 H 1.08992 * 110.41578 * 82.17914 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1485 -2.2858 -3.6036 10 1 1.1679 -1.5869 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.5048 -0.7149 1.2323 14 6 3.8574 -0.9540 2.7162 15 1 4.7431 -0.3816 2.9918 16 7 4.0786 -2.3850 2.9638 17 6 2.6297 -0.4549 3.5055 18 6 2.0116 -1.6017 4.3078 19 6 3.0275 0.6910 4.4381 20 6 1.6384 0.0438 2.4322 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 0.7088 1.1610 -3.4845 25 1 3.8864 -1.5282 0.6150 26 1 3.9070 0.2397 0.8932 27 1 4.8515 -2.7317 2.4157 28 1 4.2231 -2.5639 3.9462 29 1 2.7492 -1.9941 5.0079 30 1 1.1461 -1.2343 4.8592 31 1 1.6990 -2.3940 3.6275 32 1 3.4309 1.5149 3.8496 33 1 2.1506 1.0329 4.9880 34 1 3.7840 0.3416 5.1407 35 1 1.7486 1.1179 2.2828 36 1 0.6149 -0.1981 2.7183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = -19.540479 kcal Electronic energy + Delta-G solvation = -15150.847894 eV Core-core repulsion = 12861.687629 eV Total energy + Delta-G solvation = -2289.160264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60809 -36.76508 -34.26381 -33.48298 -31.07860 -28.55406 -27.80433 -26.86946 -25.80176 -22.69010 -21.33273 -19.63880 -18.25473 -17.04078 -16.99044 -16.06383 -15.97282 -15.07892 -15.00115 -14.52537 -14.14981 -13.85957 -13.65488 -13.26064 -13.12741 -12.84961 -12.67003 -12.54884 -12.43288 -12.15008 -12.10654 -11.83410 -11.66358 -11.32325 -11.29588 -10.87051 -10.54773 -9.39905 -9.00719 -8.12879 -6.24713 1.39030 1.40740 1.53222 2.41175 3.14779 3.44468 3.66185 3.74717 3.75472 4.24594 4.42300 4.49150 4.61189 4.72669 4.77050 4.85352 4.86271 4.93041 4.98073 5.00873 5.11625 5.18944 5.22113 5.29542 5.43297 5.44734 5.67414 5.70552 5.75879 6.20764 6.32744 6.46508 6.66645 6.79028 6.90156 7.44591 8.93595 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043417 B = 0.008923 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.759692 B = 3137.205543 C = 3474.628405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.205 3.795 3 H -0.039 1.039 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.502 5.502 13 C 0.056 3.944 14 C 0.102 3.898 15 H 0.049 0.951 16 N -0.835 5.835 17 C -0.062 4.062 18 C -0.109 4.109 19 C -0.134 4.134 20 C 0.040 3.960 21 H 0.025 0.975 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.015 0.985 27 H 0.343 0.657 28 H 0.350 0.650 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.019 0.981 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -2.559 13.058 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H -0.022 1.022 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.226 5.226 13 C -0.073 4.073 14 C -0.010 4.010 15 H 0.067 0.933 16 N -0.368 5.368 17 C -0.063 4.063 18 C -0.167 4.167 19 C -0.191 4.191 20 C -0.088 4.088 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.511 -3.085 12.606 13.740 hybrid contribution 1.279 1.104 -1.040 1.984 sum 5.790 -1.981 11.566 13.085 Atomic orbital electron populations 1.21570 0.97343 0.99036 0.99523 1.19248 0.92834 0.90031 0.88149 1.02201 1.21384 1.30909 1.12054 0.91022 0.92844 1.25749 0.95402 0.95807 1.01985 1.70031 1.37864 1.24261 1.23988 0.85450 0.78172 0.78571 0.79105 1.19284 1.20439 1.20529 1.65361 1.08092 1.47522 1.01668 1.22835 0.89776 0.98353 0.96292 1.22049 0.96154 0.89463 0.93296 0.93327 1.58674 1.50332 1.14859 1.12929 1.21400 0.93842 0.96636 0.94471 1.21486 0.99779 0.96821 0.98588 1.21865 1.02034 0.96576 0.98648 1.23208 0.99535 0.94734 0.91332 0.95581 0.92132 0.95207 0.92917 0.91969 0.96677 0.84392 0.83501 0.91253 0.93001 0.93150 0.93705 0.91520 0.90711 0.96287 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.93 71.98 0.64 -5.43 16 2 C 0.20 11.06 1.83 44.17 0.08 11.14 16 3 H -0.04 -2.36 7.97 -2.39 -0.02 -2.38 16 4 C -0.52 -29.72 8.09 25.60 0.21 -29.51 16 5 H 0.05 3.11 6.95 -2.91 -0.02 3.09 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -54.66 11.32 21.45 0.24 -54.41 16 8 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.50 -22.88 5.19 -860.73 -4.47 -27.35 16 13 C 0.06 2.30 5.40 86.45 0.47 2.77 16 14 C 0.10 3.06 3.82 45.81 0.17 3.24 16 15 H 0.05 1.30 7.71 -2.39 -0.02 1.28 16 16 N -0.83 -21.35 8.03 -164.97 -1.33 -22.68 16 17 C -0.06 -1.79 1.03 -51.28 -0.05 -1.85 16 18 C -0.11 -2.76 7.38 71.98 0.53 -2.23 16 19 C -0.13 -3.03 8.26 71.98 0.59 -2.44 16 20 C 0.04 1.53 4.63 86.45 0.40 1.93 16 21 H 0.03 1.19 7.07 -2.39 -0.02 1.18 16 22 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 23 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.06 2.70 7.30 -2.39 -0.02 2.68 16 26 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 27 H 0.34 8.04 9.04 -89.69 -0.81 7.23 16 28 H 0.35 6.90 7.43 -89.70 -0.67 6.23 16 29 H 0.07 1.38 6.91 -2.39 -0.02 1.36 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.56 7.84 -2.38 -0.02 1.54 16 32 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.02 0.76 7.60 -2.39 -0.02 0.74 16 36 H 0.07 2.60 7.42 -2.39 -0.02 2.58 16 Total: -1.00 -64.08 276.32 -0.45 -64.53 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.42 Total: 14.26 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 3.49 Total: -21.42 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -5.55 Total: -104.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.08 -0.45 -64.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.987 kcal (2) G-P(sol) polarization free energy of solvation -64.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds