Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47391 * 2 1 4 4 C 1.50697 * 109.46965 * 119.99937 * 2 1 3 5 5 H 1.08003 * 120.00203 * 120.00092 * 4 2 1 6 6 C 1.37872 * 120.00414 * 299.99631 * 4 2 1 7 7 N 1.31517 * 119.99553 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00640 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46735 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47089 * 119.99874 * 8 6 4 11 11 H 1.48489 * 109.47407 * 240.00267 * 8 6 4 12 12 N 1.46898 * 109.46954 * 239.99568 * 2 1 3 13 13 C 1.48539 * 110.99936 * 59.57179 * 12 2 1 14 14 C 1.54935 * 103.22543 * 159.72113 * 13 12 2 15 15 H 1.08997 * 110.87988 * 81.01922 * 14 13 12 16 16 N 1.46907 * 110.72302 * 204.22878 * 14 13 12 17 17 C 1.54592 * 102.92448 * 322.58366 * 14 13 12 18 18 C 1.53000 * 110.31389 * 263.04570 * 17 14 13 19 19 C 1.53000 * 110.39328 * 140.91737 * 17 14 13 20 20 C 1.47903 * 111.00220 * 176.96816 * 12 2 1 21 21 H 1.09003 * 109.47132 * 185.40076 * 1 2 3 22 22 H 1.08999 * 109.46684 * 305.39968 * 1 2 3 23 23 H 1.09000 * 109.47295 * 65.39940 * 1 2 3 24 24 H 0.97007 * 120.00206 * 180.02562 * 7 6 4 25 25 H 1.08998 * 110.66789 * 278.15545 * 13 12 2 26 26 H 1.09001 * 110.66400 * 41.28607 * 13 12 2 27 27 H 1.00900 * 110.99617 * 293.50518 * 16 14 13 28 28 H 1.00901 * 110.99786 * 57.45193 * 16 14 13 29 29 H 1.08994 * 109.47394 * 177.16687 * 18 17 14 30 30 H 1.09005 * 109.47034 * 297.16936 * 18 17 14 31 31 H 1.09005 * 109.47072 * 57.16409 * 18 17 14 32 32 H 1.08995 * 109.47203 * 302.78184 * 19 17 14 33 33 H 1.08997 * 109.46741 * 62.78523 * 19 17 14 34 34 H 1.09003 * 109.47058 * 182.78168 * 19 17 14 35 35 H 1.09000 * 109.91472 * 333.50815 * 20 12 2 36 36 H 1.08996 * 109.91830 * 94.80174 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.1463 -2.2870 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8160 12 7 2.0196 -0.6926 -1.1994 13 6 1.5349 -0.0251 -2.4347 14 6 2.5265 -0.5199 -3.5174 15 1 2.2534 -1.5150 -3.8687 16 7 2.5864 0.4269 -4.6391 17 6 3.8741 -0.5576 -2.7608 18 6 4.6697 0.7215 -3.0290 19 6 4.6864 -1.7847 -3.1793 20 6 3.4963 -0.6494 -1.2707 21 1 -0.3633 -1.0231 0.0967 22 1 -0.3633 0.5953 0.8377 23 1 -0.3634 0.4278 -0.9344 24 1 0.7088 1.1614 3.4844 25 1 0.5189 -0.3421 -2.6698 26 1 1.5868 1.0588 -2.3319 27 1 1.7087 0.4548 -5.1359 28 1 2.8516 1.3472 -4.3216 29 1 5.5932 0.7031 -2.4503 30 1 4.9075 0.7855 -4.0909 31 1 4.0751 1.5872 -2.7370 32 1 4.1037 -2.6869 -2.9932 33 1 4.9242 -1.7182 -4.2409 34 1 5.6101 -1.8233 -2.6018 35 1 3.8683 0.2262 -0.7387 36 1 3.9157 -1.5570 -0.8365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = -2.870043 kcal Electronic energy + Delta-G solvation = -15150.374100 eV Core-core repulsion = 12861.936720 eV Total energy + Delta-G solvation = -2288.437380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28473 -35.03699 -32.47695 -32.28290 -29.07523 -27.18922 -26.70356 -24.82886 -24.09609 -21.42033 -19.43247 -18.31818 -16.22708 -16.15168 -15.25511 -14.35176 -14.24980 -13.54824 -13.36924 -13.01945 -12.84107 -12.42157 -12.01061 -11.87933 -11.59685 -11.24905 -11.09755 -10.94784 -10.81375 -10.60242 -10.40678 -10.15940 -10.05058 -9.95709 -9.67403 -8.90010 -8.45111 -8.40364 -7.25482 -6.01193 -4.04982 3.29608 3.37368 3.42442 4.41168 4.66220 4.96222 5.12037 5.27347 5.29849 5.39191 5.60019 5.75171 5.85864 5.96587 6.09271 6.17538 6.22666 6.32999 6.35791 6.43847 6.56544 6.77829 6.78293 6.82469 7.02974 7.06109 7.31827 7.47883 7.59901 7.63910 7.84518 8.14680 8.31106 8.56118 9.01945 9.60179 11.06185 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041252 B = 0.009033 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.584549 B = 3099.002737 C = 3469.966990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.204 3.796 3 H -0.003 1.003 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.507 5.507 13 C 0.005 3.995 14 C 0.094 3.906 15 H 0.089 0.911 16 N -0.841 5.841 17 C -0.074 4.074 18 C -0.133 4.133 19 C -0.128 4.128 20 C 0.059 3.941 21 H 0.035 0.965 22 H 0.081 0.919 23 H 0.005 0.995 24 H 0.259 0.741 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.335 0.665 28 H 0.339 0.661 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -0.621 -10.490 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.098 3.902 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.232 5.232 13 C -0.126 4.126 14 C -0.018 4.018 15 H 0.107 0.893 16 N -0.370 5.370 17 C -0.075 4.075 18 C -0.191 4.191 19 C -0.186 4.186 20 C -0.069 4.069 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.254 -1.517 -10.586 11.509 hybrid contribution -0.330 1.017 1.537 1.872 sum 3.924 -0.500 -9.049 9.876 Atomic orbital electron populations 1.21792 0.97713 1.00352 0.98876 1.19444 0.92408 0.91836 0.86532 0.98497 1.21139 1.30815 1.12192 0.89680 0.91989 1.24943 0.95245 0.95096 0.99061 1.69918 1.37122 1.23144 1.23262 0.86464 0.78591 0.79649 0.82869 1.19707 1.21168 1.21034 1.64826 1.05556 1.50926 1.01904 1.23927 0.99210 0.96375 0.93101 1.22468 0.94133 0.96320 0.88875 0.89303 1.59048 1.37110 1.13095 1.27713 1.21476 0.94595 0.95747 0.95648 1.21766 0.99298 0.96404 1.01613 1.21766 0.99289 0.97002 1.00519 1.22785 0.90273 1.01202 0.92679 0.94593 0.90036 0.97564 0.93097 0.91298 0.95152 0.85285 0.84760 0.93024 0.91737 0.93455 0.92531 0.92893 0.93060 0.93902 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.86 37.16 0.33 -2.90 16 2 C 0.20 5.26 1.75 -68.87 -0.12 5.14 16 3 H 0.00 -0.07 7.99 -51.93 -0.41 -0.49 16 4 C -0.50 -13.92 8.14 -34.44 -0.28 -14.20 16 5 H 0.06 1.74 7.44 -52.48 -0.39 1.35 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.82 11.38 55.43 0.63 -25.19 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.51 -11.11 5.10 -223.88 -1.14 -12.25 16 13 C 0.00 0.08 5.05 -1.90 -0.01 0.07 16 14 C 0.09 1.44 3.68 -65.85 -0.24 1.19 16 15 H 0.09 1.38 7.86 -51.93 -0.41 0.97 16 16 N -0.84 -10.64 8.55 -3.09 -0.03 -10.66 16 17 C -0.07 -1.15 0.95 -153.15 -0.15 -1.30 16 18 C -0.13 -1.88 7.06 37.16 0.26 -1.62 16 19 C -0.13 -1.79 8.22 37.16 0.31 -1.49 16 20 C 0.06 1.17 5.14 -2.75 -0.01 1.16 16 21 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.08 2.21 6.23 -51.93 -0.32 1.88 16 23 H 0.01 0.12 6.65 -51.93 -0.35 -0.22 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 26 H 0.03 0.58 7.97 -51.93 -0.41 0.16 16 27 H 0.34 3.70 9.08 -39.29 -0.36 3.34 16 28 H 0.34 4.18 7.00 -39.29 -0.28 3.91 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.83 7.49 -51.93 -0.39 0.44 16 31 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.92 7.23 -51.93 -0.38 0.55 16 36 H 0.07 1.44 7.54 -51.93 -0.39 1.05 16 LS Contribution 276.61 15.07 4.17 4.17 Total: -1.00 -28.66 276.61 -7.51 -36.17 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.12 Total: 3.60 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.01 Total: -12.43 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.54 Total: -48.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.66 -7.51 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.301 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds