Wall clock time and date at job start Mon Mar 30 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47391 * 2 1 4 4 C 1.50697 * 109.46965 * 119.99937 * 2 1 3 5 5 H 1.08003 * 120.00203 * 120.00092 * 4 2 1 6 6 C 1.37872 * 120.00414 * 299.99631 * 4 2 1 7 7 N 1.31517 * 119.99553 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00640 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46735 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47089 * 119.99874 * 8 6 4 11 11 H 1.48489 * 109.47407 * 240.00267 * 8 6 4 12 12 N 1.46898 * 109.46954 * 239.99568 * 2 1 3 13 13 C 1.48539 * 110.99936 * 59.57179 * 12 2 1 14 14 C 1.54935 * 103.22543 * 159.72113 * 13 12 2 15 15 H 1.08997 * 110.87988 * 81.01922 * 14 13 12 16 16 N 1.46907 * 110.72302 * 204.22878 * 14 13 12 17 17 C 1.54592 * 102.92448 * 322.58366 * 14 13 12 18 18 C 1.53000 * 110.31389 * 263.04570 * 17 14 13 19 19 C 1.53000 * 110.39328 * 140.91737 * 17 14 13 20 20 C 1.47903 * 111.00220 * 176.96816 * 12 2 1 21 21 H 1.09003 * 109.47132 * 185.40076 * 1 2 3 22 22 H 1.08999 * 109.46684 * 305.39968 * 1 2 3 23 23 H 1.09000 * 109.47295 * 65.39940 * 1 2 3 24 24 H 0.97007 * 120.00206 * 180.02562 * 7 6 4 25 25 H 1.08998 * 110.66789 * 278.15545 * 13 12 2 26 26 H 1.09001 * 110.66400 * 41.28607 * 13 12 2 27 27 H 1.00900 * 110.99617 * 293.50518 * 16 14 13 28 28 H 1.00901 * 110.99786 * 57.45193 * 16 14 13 29 29 H 1.08994 * 109.47394 * 177.16687 * 18 17 14 30 30 H 1.09005 * 109.47034 * 297.16936 * 18 17 14 31 31 H 1.09005 * 109.47072 * 57.16409 * 18 17 14 32 32 H 1.08995 * 109.47203 * 302.78184 * 19 17 14 33 33 H 1.08997 * 109.46741 * 62.78523 * 19 17 14 34 34 H 1.09003 * 109.47058 * 182.78168 * 19 17 14 35 35 H 1.09000 * 109.91472 * 333.50815 * 20 12 2 36 36 H 1.08996 * 109.91830 * 94.80174 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.1463 -2.2870 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5865 4.8160 12 7 2.0196 -0.6926 -1.1994 13 6 1.5349 -0.0251 -2.4347 14 6 2.5265 -0.5199 -3.5174 15 1 2.2534 -1.5150 -3.8687 16 7 2.5864 0.4269 -4.6391 17 6 3.8741 -0.5576 -2.7608 18 6 4.6697 0.7215 -3.0290 19 6 4.6864 -1.7847 -3.1793 20 6 3.4963 -0.6494 -1.2707 21 1 -0.3633 -1.0231 0.0967 22 1 -0.3633 0.5953 0.8377 23 1 -0.3634 0.4278 -0.9344 24 1 0.7088 1.1614 3.4844 25 1 0.5189 -0.3421 -2.6698 26 1 1.5868 1.0588 -2.3319 27 1 1.7087 0.4548 -5.1359 28 1 2.8516 1.3472 -4.3216 29 1 5.5932 0.7031 -2.4503 30 1 4.9075 0.7855 -4.0909 31 1 4.0751 1.5872 -2.7370 32 1 4.1037 -2.6869 -2.9932 33 1 4.9242 -1.7182 -4.2409 34 1 5.6101 -1.8233 -2.6018 35 1 3.8683 0.2262 -0.7387 36 1 3.9157 -1.5570 -0.8365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:14 Heat of formation + Delta-G solvation = -23.533640 kcal Electronic energy + Delta-G solvation = -15151.270141 eV Core-core repulsion = 12861.936720 eV Total energy + Delta-G solvation = -2289.333421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74095 -36.79506 -34.28122 -33.62246 -30.93965 -28.55975 -28.09369 -26.77486 -25.63412 -22.99347 -21.30246 -19.65642 -18.28356 -17.42541 -17.02191 -16.04525 -15.75577 -15.06979 -14.94349 -14.55686 -14.23483 -13.97250 -13.57756 -13.41474 -12.97046 -12.89521 -12.74613 -12.61360 -12.51472 -12.44025 -12.07498 -12.02768 -11.58876 -11.41480 -11.25074 -10.95589 -10.57601 -9.58812 -9.05602 -8.15541 -6.27288 1.38024 1.39620 1.52004 2.39317 3.12444 3.29863 3.63317 3.73976 3.95588 4.08139 4.34081 4.35930 4.53673 4.70569 4.74153 4.84222 4.89228 4.91083 4.94332 5.03507 5.06040 5.09781 5.17795 5.32250 5.39409 5.42264 5.53508 5.68537 5.70277 6.16472 6.22396 6.33209 6.61247 6.62403 6.86554 7.42193 8.91062 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041252 B = 0.009033 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.584549 B = 3099.002737 C = 3469.966990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.210 3.790 3 H -0.040 1.040 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.518 5.518 13 C 0.003 3.997 14 C 0.109 3.891 15 H 0.094 0.906 16 N -0.829 5.829 17 C -0.070 4.070 18 C -0.127 4.127 19 C -0.123 4.123 20 C 0.060 3.940 21 H 0.029 0.971 22 H 0.057 0.943 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.022 0.978 27 H 0.348 0.652 28 H 0.343 0.657 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -1.281 -11.742 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H -0.022 1.022 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.243 5.243 13 C -0.127 4.127 14 C -0.004 4.004 15 H 0.112 0.888 16 N -0.359 5.359 17 C -0.071 4.071 18 C -0.185 4.185 19 C -0.180 4.180 20 C -0.068 4.068 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.951 -2.175 -11.866 13.040 hybrid contribution -0.562 1.253 1.893 2.338 sum 4.389 -0.922 -9.973 10.935 Atomic orbital electron populations 1.21603 0.97277 0.99551 0.99051 1.19219 0.92695 0.89893 0.87906 1.02242 1.21372 1.31039 1.12146 0.91026 0.92833 1.25742 0.95359 0.95787 1.01993 1.70037 1.37832 1.24217 1.24042 0.85457 0.78192 0.78612 0.79101 1.19234 1.20546 1.20385 1.64708 1.06956 1.50739 1.01879 1.24049 1.00362 0.95715 0.92588 1.22299 0.92542 0.96997 0.88513 0.88829 1.59020 1.37907 1.12911 1.26079 1.21461 0.95485 0.97649 0.92475 1.21723 0.98909 0.95012 1.02840 1.21720 0.99045 0.95593 1.01688 1.22783 0.88982 0.99376 0.95704 0.95149 0.92443 0.95242 0.92900 0.90960 0.95992 0.83821 0.84305 0.92788 0.89750 0.94440 0.93005 0.91043 0.92492 0.96526 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.86 71.98 0.64 -5.28 16 2 C 0.21 11.12 1.75 44.17 0.08 11.20 16 3 H -0.04 -2.36 7.99 -2.39 -0.02 -2.37 16 4 C -0.52 -29.48 8.14 25.60 0.21 -29.27 16 5 H 0.05 3.07 7.44 -2.91 -0.02 3.05 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.13 11.38 21.45 0.24 -53.88 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.52 -22.90 5.10 -862.23 -4.40 -27.29 16 13 C 0.00 0.12 5.05 86.65 0.44 0.56 16 14 C 0.11 3.10 3.68 46.12 0.17 3.27 16 15 H 0.09 2.64 7.86 -2.39 -0.02 2.63 16 16 N -0.83 -18.53 8.55 -163.69 -1.40 -19.93 16 17 C -0.07 -2.07 0.95 -51.30 -0.05 -2.12 16 18 C -0.13 -3.36 7.06 71.98 0.51 -2.85 16 19 C -0.12 -3.13 8.22 71.98 0.59 -2.54 16 20 C 0.06 2.41 5.14 86.45 0.44 2.85 16 21 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.06 3.18 6.23 -2.39 -0.01 3.16 16 23 H 0.03 1.30 6.65 -2.39 -0.02 1.28 16 24 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 25 H 0.07 2.52 7.53 -2.39 -0.02 2.50 16 26 H 0.02 0.82 7.97 -2.39 -0.02 0.80 16 27 H 0.35 6.58 9.08 -89.69 -0.81 5.76 16 28 H 0.34 7.56 7.00 -89.69 -0.63 6.93 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.91 7.49 -2.38 -0.02 1.89 16 31 H 0.04 1.05 7.54 -2.38 -0.02 1.03 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.02 0.73 7.23 -2.39 -0.02 0.72 16 36 H 0.06 2.47 7.54 -2.39 -0.02 2.45 16 Total: -1.00 -61.75 276.61 -0.44 -62.19 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.39 Total: 15.45 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.48 Total: -23.18 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -5.55 Total: -101.11 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.75 -0.44 -62.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.656 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds