Wall clock time and date at job start Mon Mar 30 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47488 * 2 1 4 4 C 1.50704 * 109.47334 * 119.99618 * 2 1 3 5 5 H 1.08006 * 119.99896 * 119.99641 * 4 2 1 6 6 C 1.37881 * 120.00115 * 300.00464 * 4 2 1 7 7 N 1.31509 * 119.99870 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99998 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47100 * 59.99997 * 8 6 4 10 10 H 1.48496 * 109.46974 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47118 * 300.00024 * 8 6 4 12 12 N 1.46902 * 109.47536 * 239.99897 * 2 1 3 13 13 C 1.48529 * 111.00116 * 177.39648 * 12 2 1 14 14 C 1.55106 * 103.28298 * 200.33439 * 13 12 2 15 15 H 1.08999 * 110.70504 * 278.99552 * 14 13 12 16 16 N 1.46902 * 110.81214 * 155.66321 * 14 13 12 17 17 C 1.54589 * 102.84536 * 37.30476 * 14 13 12 18 18 C 1.53006 * 110.30905 * 219.18943 * 17 14 13 19 19 C 1.53001 * 110.31036 * 97.12127 * 17 14 13 20 20 C 1.47894 * 110.99828 * 59.99992 * 12 2 1 21 21 H 1.09005 * 109.46766 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47318 * 299.99893 * 1 2 3 23 23 H 1.08997 * 109.47163 * 60.00446 * 1 2 3 24 24 H 0.96996 * 120.00469 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.67141 * 318.71240 * 13 12 2 26 26 H 1.09004 * 110.66815 * 81.67818 * 13 12 2 27 27 H 1.00899 * 110.99628 * 66.54067 * 16 14 13 28 28 H 1.00903 * 110.99899 * 190.49478 * 16 14 13 29 29 H 1.09001 * 109.47002 * 298.60900 * 18 17 14 30 30 H 1.08993 * 109.46955 * 58.61337 * 18 17 14 31 31 H 1.09000 * 109.47050 * 178.61166 * 18 17 14 32 32 H 1.08998 * 109.47148 * 181.39214 * 19 17 14 33 33 H 1.08998 * 109.46706 * 301.38876 * 19 17 14 34 34 H 1.09000 * 109.47170 * 61.38405 * 19 17 14 35 35 H 1.08998 * 109.92182 * 26.48802 * 20 12 2 36 36 H 1.09010 * 110.08440 * 265.29423 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1207 4.0083 10 1 1.8269 -0.4197 5.2205 11 1 1.8259 -2.5200 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 3.5031 -0.6580 -1.2656 14 6 3.7994 -0.9272 -2.7641 15 1 3.7478 -1.9941 -2.9815 16 7 5.1090 -0.3806 -3.1436 17 6 2.6605 -0.1670 -3.4816 18 6 2.1572 -0.9730 -4.6808 19 6 3.1454 1.2114 -3.9351 20 6 1.5455 -0.0219 -2.4293 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.7094 1.1619 3.4843 25 1 3.8787 0.3218 -0.9706 26 1 3.9345 -1.4386 -0.6388 27 1 5.8556 -0.8740 -2.6775 28 1 5.2325 -0.4000 -4.1449 29 1 2.9703 -1.1097 -5.3937 30 1 1.8038 -1.9466 -4.3416 31 1 1.3390 -0.4367 -5.1614 32 1 2.3258 1.7446 -4.4167 33 1 3.4890 1.7784 -3.0699 34 1 3.9670 1.0932 -4.6416 35 1 1.3592 1.0332 -2.2288 36 1 0.6327 -0.4983 -2.7873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:16 Heat of formation + Delta-G solvation = -22.890300 kcal Electronic energy + Delta-G solvation = -15124.747029 eV Core-core repulsion = 12835.441505 eV Total energy + Delta-G solvation = -2289.305523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64840 -36.79361 -34.32633 -33.48126 -31.12216 -28.28210 -28.10077 -26.92159 -25.82805 -22.65028 -21.38892 -19.59147 -18.39861 -17.03476 -16.76762 -16.27348 -16.02321 -15.17022 -14.93873 -14.61431 -14.19229 -14.05956 -13.54637 -13.24639 -13.16055 -12.83706 -12.71243 -12.62440 -12.48072 -12.21986 -12.12638 -11.81472 -11.69012 -11.38123 -11.20466 -10.94225 -10.54139 -9.55180 -9.05083 -8.13070 -6.25591 1.40200 1.42566 1.50289 2.40773 3.13668 3.28230 3.64815 3.74045 3.91463 4.07587 4.40864 4.45206 4.57535 4.73338 4.77460 4.87124 4.88079 4.91492 4.99190 5.04952 5.09293 5.16111 5.17053 5.27910 5.41158 5.43805 5.56866 5.69025 5.72037 6.19555 6.29816 6.34869 6.63393 6.71656 6.87854 7.43574 8.93125 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043381 B = 0.008786 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.288454 B = 3186.223626 C = 3517.402172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.211 3.789 3 H -0.042 1.042 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.520 5.520 13 C 0.062 3.938 14 C 0.103 3.897 15 H 0.052 0.948 16 N -0.838 5.838 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.112 4.112 20 C 0.044 3.956 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.026 0.974 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.347 0.653 28 H 0.353 0.647 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.019 0.981 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -2.876 -13.173 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H -0.024 1.024 4 C -0.557 4.557 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.244 5.244 13 C -0.067 4.067 14 C -0.009 4.009 15 H 0.070 0.930 16 N -0.371 5.371 17 C -0.071 4.071 18 C -0.185 4.185 19 C -0.170 4.170 20 C -0.084 4.084 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.464 -2.616 -12.671 13.687 hybrid contribution 0.482 -0.184 0.966 1.095 sum 4.945 -2.801 -11.705 13.012 Atomic orbital electron populations 1.21611 0.97224 0.99227 0.99665 1.19193 0.92759 0.89857 0.87802 1.02421 1.21324 1.31178 1.12228 0.91020 0.92754 1.25759 0.95348 0.95789 1.02022 1.70012 1.37759 1.24171 1.24187 0.85548 0.78677 0.78712 0.78320 1.19725 1.20710 1.19548 1.64735 1.06895 1.50754 1.02041 1.22887 0.89044 0.98678 0.96067 1.22182 0.89725 0.95950 0.93047 0.92977 1.58653 1.02582 1.62314 1.13573 1.21484 0.93538 0.96947 0.95133 1.21804 1.01553 0.99207 0.95946 1.21557 1.00713 0.94233 1.00457 1.22996 0.98530 0.96041 0.90845 0.94917 0.92085 0.95474 0.92854 0.96332 0.92373 0.83974 0.83236 0.90934 0.92908 0.91689 0.92817 0.95179 0.90402 0.96262 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.87 71.98 0.64 -5.52 16 2 C 0.21 11.44 1.73 44.17 0.08 11.52 16 3 H -0.04 -2.54 8.00 -2.39 -0.02 -2.56 16 4 C -0.52 -29.92 8.13 25.60 0.21 -29.71 16 5 H 0.05 3.12 7.12 -2.91 -0.02 3.10 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.83 11.32 21.45 0.24 -54.59 16 8 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.52 -23.60 5.10 -861.90 -4.40 -28.00 16 13 C 0.06 2.56 5.52 86.71 0.48 3.04 16 14 C 0.10 3.10 3.63 46.18 0.17 3.27 16 15 H 0.05 1.51 7.86 -2.39 -0.02 1.49 16 16 N -0.84 -20.07 8.13 -163.46 -1.33 -21.39 16 17 C -0.07 -2.02 0.92 -51.30 -0.05 -2.07 16 18 C -0.13 -2.83 8.21 71.98 0.59 -2.24 16 19 C -0.11 -2.99 7.52 71.98 0.54 -2.45 16 20 C 0.04 1.68 4.73 86.45 0.41 2.09 16 21 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 23 H 0.03 1.24 7.05 -2.39 -0.02 1.22 16 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.02 0.85 7.96 -2.39 -0.02 0.84 16 26 H 0.06 2.49 7.54 -2.38 -0.02 2.48 16 27 H 0.35 7.45 9.08 -89.69 -0.81 6.64 16 28 H 0.35 6.44 8.04 -89.69 -0.72 5.72 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.68 6.90 -2.39 -0.02 1.67 16 35 H 0.02 0.79 7.06 -2.39 -0.02 0.77 16 36 H 0.07 2.61 7.68 -2.38 -0.02 2.60 16 Total: -1.00 -63.97 277.52 -0.42 -64.39 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -0.48 Total: 13.76 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.51 Total: -21.09 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -5.48 Total: -103.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.97 -0.42 -64.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.498 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds