Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47547 * 239.99465 * 2 1 3 5 5 H 1.07994 * 119.99943 * 274.99917 * 4 2 1 6 6 C 1.37883 * 119.99685 * 94.99454 * 4 2 1 7 7 N 1.31515 * 119.99810 * 184.88971 * 6 4 2 8 8 Si 1.86801 * 119.99936 * 4.89356 * 6 4 2 9 9 H 1.48497 * 109.47092 * 84.78048 * 8 6 4 10 10 H 1.48502 * 109.46845 * 204.77859 * 8 6 4 11 11 H 1.48493 * 109.47210 * 324.78039 * 8 6 4 12 12 N 1.46902 * 109.47253 * 119.99322 * 2 1 3 13 13 C 1.48563 * 111.00102 * 179.87665 * 12 2 1 14 14 C 1.54376 * 104.59244 * 159.04270 * 13 12 2 15 15 H 1.09001 * 110.32696 * 95.04325 * 14 13 12 16 16 N 1.46901 * 110.32452 * 217.25080 * 14 13 12 17 17 C 1.54257 * 105.06395 * 336.14891 * 14 13 12 18 18 C 1.52995 * 110.32759 * 118.89783 * 17 14 13 19 19 C 1.53001 * 110.32393 * 241.00237 * 17 14 13 20 20 C 1.48560 * 111.00215 * 295.29998 * 12 2 1 21 21 H 1.09003 * 109.46791 * 175.21146 * 1 2 3 22 22 H 1.08998 * 109.47650 * 295.20974 * 1 2 3 23 23 H 1.08997 * 109.47112 * 55.21974 * 1 2 3 24 24 H 0.96993 * 119.99761 * 180.02562 * 7 6 4 25 25 H 1.09003 * 110.41212 * 277.81972 * 13 12 2 26 26 H 1.08998 * 110.40960 * 40.26537 * 13 12 2 27 27 H 1.00907 * 110.99559 * 298.54689 * 16 14 13 28 28 H 1.00897 * 111.00026 * 62.49657 * 16 14 13 29 29 H 1.08998 * 109.47467 * 60.00085 * 18 17 14 30 30 H 1.09000 * 109.47233 * 180.02562 * 18 17 14 31 31 H 1.09004 * 109.47313 * 300.00068 * 18 17 14 32 32 H 1.09005 * 109.46931 * 59.99620 * 19 17 14 33 33 H 1.08999 * 109.47374 * 179.97438 * 19 17 14 34 34 H 1.08994 * 109.47583 * 299.99951 * 19 17 14 35 35 H 1.09001 * 110.40678 * 319.73494 * 20 12 2 36 36 H 1.08993 * 110.41414 * 82.17911 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1356 -1.7855 -1.2288 6 6 2.3603 0.0120 -2.3581 7 7 2.7065 -0.6133 -3.4620 8 14 2.3127 1.8790 -2.3177 9 1 3.5974 2.3954 -1.7811 10 1 2.1063 2.3986 -3.6935 11 1 1.1966 2.3270 -1.4467 12 7 2.0197 -0.6924 1.1995 13 6 3.5048 -0.7148 1.2324 14 6 3.8574 -0.9539 2.7161 15 1 4.0198 -2.0159 2.9004 16 7 5.0510 -0.1823 3.0877 17 6 2.6297 -0.4548 3.5055 18 6 2.0116 -1.6016 4.3078 19 6 3.0274 0.6910 4.4381 20 6 1.6384 0.0439 2.4322 21 1 -0.3633 -1.0241 -0.0858 22 1 -0.3634 0.4377 0.9297 23 1 -0.3633 0.5862 -0.8440 24 1 2.9375 -0.1051 -4.2552 25 1 3.8865 -1.5280 0.6151 26 1 3.9069 0.2406 0.8952 27 1 5.8507 -0.4686 2.5429 28 1 4.8850 0.8085 2.9931 29 1 2.7491 -1.9939 5.0081 30 1 1.1461 -1.2341 4.8592 31 1 1.6991 -2.3939 3.6276 32 1 3.4309 1.5151 3.8496 33 1 2.1506 1.0330 4.9880 34 1 3.7839 0.3418 5.1407 35 1 1.7485 1.1180 2.2828 36 1 0.6149 -0.1981 2.7183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642842886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = -0.754169 kcal Electronic energy + Delta-G solvation = -15239.326478 eV Core-core repulsion = 12950.980849 eV Total energy + Delta-G solvation = -2288.345629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36569 -35.15970 -32.50314 -32.18548 -29.96621 -27.25817 -26.43321 -25.19688 -24.16028 -21.30619 -19.36577 -18.40339 -17.06583 -16.02881 -15.23202 -14.29914 -14.21149 -13.77754 -13.57106 -13.12344 -12.73273 -12.54760 -12.26667 -12.09634 -11.78247 -11.46376 -11.23314 -11.08786 -10.89465 -10.71364 -10.43540 -10.32909 -10.16914 -9.95893 -9.74718 -9.09109 -8.61617 -8.41388 -7.47285 -6.12577 -4.11159 3.19777 3.29864 3.31111 4.34781 4.65207 4.89080 4.97664 5.15765 5.29080 5.32299 5.63805 5.73224 5.78438 5.91054 5.98825 6.06169 6.16919 6.23679 6.34047 6.37547 6.45529 6.48357 6.57973 6.60509 6.72296 6.77063 6.86274 7.20050 7.36050 7.57210 7.64214 7.92754 7.97088 8.61500 8.98286 9.51171 11.00662 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.010059 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.561301 B = 2782.991238 C = 2938.201182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.169 3.831 3 H 0.000 1.000 4 C -0.501 4.501 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.494 5.494 13 C 0.023 3.977 14 C 0.088 3.912 15 H 0.087 0.913 16 N -0.841 5.841 17 C -0.066 4.066 18 C -0.128 4.128 19 C -0.126 4.126 20 C 0.034 3.966 21 H 0.054 0.946 22 H 0.022 0.978 23 H 0.044 0.956 24 H 0.264 0.736 25 H 0.082 0.918 26 H 0.031 0.969 27 H 0.337 0.663 28 H 0.337 0.663 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 2.592 13.024 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.062 3.938 3 H 0.018 0.982 4 C -0.539 4.539 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.192 1.192 12 N -0.218 5.218 13 C -0.107 4.107 14 C -0.024 4.024 15 H 0.105 0.895 16 N -0.371 5.371 17 C -0.067 4.067 18 C -0.186 4.186 19 C -0.184 4.184 20 C -0.095 4.095 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.560 1.756 13.515 13.640 hybrid contribution 0.294 2.283 -1.341 2.664 sum 0.854 4.039 12.174 12.855 Atomic orbital electron populations 1.21903 0.97754 1.01053 0.98155 1.19919 0.92505 0.92035 0.89373 0.98202 1.20893 1.43013 0.95863 0.94145 0.90196 1.25003 0.94771 0.97843 0.95433 1.69889 1.46393 1.35597 1.01642 0.86956 0.78838 0.87045 0.77255 1.20514 1.21319 1.19163 1.65434 1.07383 1.47592 1.01437 1.23642 0.90625 1.00688 0.95746 1.22382 0.89185 0.97986 0.92835 0.89536 1.59203 1.06222 1.08968 1.62667 1.21333 0.94539 0.95877 0.94920 1.21756 0.99682 0.97882 0.99247 1.21676 1.00554 0.97144 0.99048 1.23264 0.98763 0.95719 0.91723 0.92657 0.95890 0.93702 0.92618 0.89984 0.95064 0.85073 0.84947 0.93049 0.93198 0.91863 0.93409 0.93569 0.91578 0.95170 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.23 37.16 0.34 -2.51 16 2 C 0.17 4.03 1.49 -68.86 -0.10 3.92 16 3 H 0.00 0.01 5.13 -51.93 -0.27 -0.26 16 4 C -0.50 -13.94 8.13 -34.44 -0.28 -14.22 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 8 Si 0.87 21.53 26.99 -169.99 -4.59 16.94 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.38 6.82 56.52 0.39 -5.99 16 12 N -0.49 -10.32 5.19 -223.40 -1.16 -11.48 16 13 C 0.02 0.46 5.41 -2.18 -0.01 0.44 16 14 C 0.09 1.37 3.84 -66.33 -0.25 1.12 16 15 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 16 N -0.84 -11.29 8.20 -3.50 -0.03 -11.32 16 17 C -0.07 -0.97 1.03 -153.13 -0.16 -1.12 16 18 C -0.13 -1.71 8.23 37.16 0.31 -1.40 16 19 C -0.13 -1.62 7.37 37.16 0.27 -1.35 16 20 C 0.03 0.59 4.63 -2.18 -0.01 0.58 16 21 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.02 0.43 6.85 -51.93 -0.36 0.08 16 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.08 1.75 7.98 -51.93 -0.41 1.33 16 26 H 0.03 0.64 7.88 -51.93 -0.41 0.23 16 27 H 0.34 4.20 9.06 -39.29 -0.36 3.84 16 28 H 0.34 4.43 7.04 -39.29 -0.28 4.15 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 35 H 0.03 0.54 7.60 -51.93 -0.39 0.15 16 36 H 0.07 1.23 7.30 -51.93 -0.38 0.85 16 LS Contribution 276.55 15.07 4.17 4.17 Total: -1.00 -29.19 276.55 -6.95 -36.13 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.12 Total: 4.56 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.01 Total: -12.60 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.41 Total: -49.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.19 -6.95 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.377 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds