Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47547 * 239.99465 * 2 1 3 5 5 H 1.07994 * 119.99943 * 274.99917 * 4 2 1 6 6 C 1.37883 * 119.99685 * 94.99454 * 4 2 1 7 7 N 1.31515 * 119.99810 * 184.88971 * 6 4 2 8 8 Si 1.86801 * 119.99936 * 4.89356 * 6 4 2 9 9 H 1.48497 * 109.47092 * 84.78048 * 8 6 4 10 10 H 1.48502 * 109.46845 * 204.77859 * 8 6 4 11 11 H 1.48493 * 109.47210 * 324.78039 * 8 6 4 12 12 N 1.46902 * 109.47253 * 119.99322 * 2 1 3 13 13 C 1.48563 * 111.00102 * 179.87665 * 12 2 1 14 14 C 1.54376 * 104.59244 * 159.04270 * 13 12 2 15 15 H 1.09001 * 110.32696 * 95.04325 * 14 13 12 16 16 N 1.46901 * 110.32452 * 217.25080 * 14 13 12 17 17 C 1.54257 * 105.06395 * 336.14891 * 14 13 12 18 18 C 1.52995 * 110.32759 * 118.89783 * 17 14 13 19 19 C 1.53001 * 110.32393 * 241.00237 * 17 14 13 20 20 C 1.48560 * 111.00215 * 295.29998 * 12 2 1 21 21 H 1.09003 * 109.46791 * 175.21146 * 1 2 3 22 22 H 1.08998 * 109.47650 * 295.20974 * 1 2 3 23 23 H 1.08997 * 109.47112 * 55.21974 * 1 2 3 24 24 H 0.96993 * 119.99761 * 180.02562 * 7 6 4 25 25 H 1.09003 * 110.41212 * 277.81972 * 13 12 2 26 26 H 1.08998 * 110.40960 * 40.26537 * 13 12 2 27 27 H 1.00907 * 110.99559 * 298.54689 * 16 14 13 28 28 H 1.00897 * 111.00026 * 62.49657 * 16 14 13 29 29 H 1.08998 * 109.47467 * 60.00085 * 18 17 14 30 30 H 1.09000 * 109.47233 * 180.02562 * 18 17 14 31 31 H 1.09004 * 109.47313 * 300.00068 * 18 17 14 32 32 H 1.09005 * 109.46931 * 59.99620 * 19 17 14 33 33 H 1.08999 * 109.47374 * 179.97438 * 19 17 14 34 34 H 1.08994 * 109.47583 * 299.99951 * 19 17 14 35 35 H 1.09001 * 110.40678 * 319.73494 * 20 12 2 36 36 H 1.08993 * 110.41414 * 82.17911 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1356 -1.7855 -1.2288 6 6 2.3603 0.0120 -2.3581 7 7 2.7065 -0.6133 -3.4620 8 14 2.3127 1.8790 -2.3177 9 1 3.5974 2.3954 -1.7811 10 1 2.1063 2.3986 -3.6935 11 1 1.1966 2.3270 -1.4467 12 7 2.0197 -0.6924 1.1995 13 6 3.5048 -0.7148 1.2324 14 6 3.8574 -0.9539 2.7161 15 1 4.0198 -2.0159 2.9004 16 7 5.0510 -0.1823 3.0877 17 6 2.6297 -0.4548 3.5055 18 6 2.0116 -1.6016 4.3078 19 6 3.0274 0.6910 4.4381 20 6 1.6384 0.0439 2.4322 21 1 -0.3633 -1.0241 -0.0858 22 1 -0.3634 0.4377 0.9297 23 1 -0.3633 0.5862 -0.8440 24 1 2.9375 -0.1051 -4.2552 25 1 3.8865 -1.5280 0.6151 26 1 3.9069 0.2406 0.8952 27 1 5.8507 -0.4686 2.5429 28 1 4.8850 0.8085 2.9931 29 1 2.7491 -1.9939 5.0081 30 1 1.1461 -1.2341 4.8592 31 1 1.6991 -2.3939 3.6276 32 1 3.4309 1.5151 3.8496 33 1 2.1506 1.0330 4.9880 34 1 3.7839 0.3418 5.1407 35 1 1.7485 1.1180 2.2828 36 1 0.6149 -0.1981 2.7183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642842886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = -22.860913 kcal Electronic energy + Delta-G solvation = -15240.285099 eV Core-core repulsion = 12950.980849 eV Total energy + Delta-G solvation = -2289.304249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76458 -36.81758 -34.34593 -33.56945 -31.67732 -28.50763 -27.88635 -26.83264 -25.74973 -22.79383 -21.19791 -19.70804 -19.09276 -17.29127 -16.91323 -16.04552 -15.72858 -15.08693 -14.99542 -14.77906 -14.44012 -14.04303 -13.83506 -13.45028 -13.04955 -12.96671 -12.72252 -12.62923 -12.60597 -12.33230 -12.04059 -11.86552 -11.59366 -11.49764 -11.26474 -11.07608 -10.79128 -9.64835 -9.13469 -8.33992 -6.37141 1.24214 1.27171 1.37487 2.26387 2.97231 3.29138 3.61952 3.68393 3.96534 4.09833 4.33999 4.40144 4.44883 4.56344 4.73301 4.74887 4.79842 4.85363 4.95704 4.97475 5.04797 5.10994 5.15065 5.16499 5.33556 5.41739 5.45163 5.59760 5.64122 6.03013 6.08678 6.29566 6.55380 6.62201 6.70910 7.29045 8.83203 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.010059 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.561301 B = 2782.991238 C = 2938.201182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.171 3.829 3 H -0.003 1.003 4 C -0.500 4.500 5 H 0.031 0.969 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.249 1.249 12 N -0.510 5.510 13 C 0.024 3.976 14 C 0.100 3.900 15 H 0.086 0.914 16 N -0.830 5.830 17 C -0.061 4.061 18 C -0.124 4.124 19 C -0.120 4.120 20 C 0.034 3.966 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.049 0.951 26 H 0.018 0.982 27 H 0.343 0.657 28 H 0.342 0.658 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 4.399 15.502 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.761 3.239 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.172 1.172 12 N -0.234 5.234 13 C -0.106 4.106 14 C -0.013 4.013 15 H 0.104 0.896 16 N -0.359 5.359 17 C -0.062 4.062 18 C -0.182 4.182 19 C -0.178 4.178 20 C -0.094 4.094 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.185 3.563 16.023 16.416 hybrid contribution 0.430 1.605 -2.099 2.677 sum 0.615 5.168 13.925 14.866 Atomic orbital electron populations 1.21802 0.96100 1.00809 0.99672 1.19798 0.93715 0.91283 0.88907 0.98530 1.21029 1.42669 0.93870 0.96267 0.95048 1.25827 0.94533 1.03078 0.94855 1.70041 1.48237 1.37738 1.02575 0.85904 0.79663 0.80664 0.77705 1.19651 1.20925 1.17244 1.65295 1.08135 1.48113 1.01835 1.23644 0.89978 0.98677 0.98340 1.22250 0.90610 0.98436 0.89957 0.89613 1.59210 1.05453 1.09120 1.62141 1.21349 0.93110 0.97201 0.94559 1.21724 1.00635 0.96809 0.99017 1.21627 1.01430 0.96071 0.98637 1.23366 1.00085 0.95369 0.90610 0.93529 0.92649 0.94135 0.92491 0.93285 0.96357 0.84417 0.84388 0.91734 0.91493 0.93524 0.93487 0.92035 0.90866 0.95132 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 9.23 71.98 0.66 -4.66 16 2 C 0.17 8.09 1.49 44.17 0.07 8.15 16 3 H 0.00 -0.13 5.13 -2.39 -0.01 -0.15 16 4 C -0.50 -28.76 8.13 25.60 0.21 -28.55 16 5 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 6 C 0.01 0.85 5.47 84.66 0.46 1.32 16 7 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 8 Si 0.94 44.34 26.99 68.60 1.85 46.19 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.25 -10.98 6.82 99.48 0.68 -10.30 16 12 N -0.51 -21.08 5.19 -860.72 -4.47 -25.55 16 13 C 0.02 0.96 5.41 86.45 0.47 1.42 16 14 C 0.10 2.97 3.84 45.81 0.18 3.15 16 15 H 0.09 2.58 7.71 -2.39 -0.02 2.57 16 16 N -0.83 -20.48 8.20 -164.98 -1.35 -21.83 16 17 C -0.06 -1.63 1.03 -51.29 -0.05 -1.68 16 18 C -0.12 -2.93 8.23 71.98 0.59 -2.34 16 19 C -0.12 -2.60 7.37 71.98 0.53 -2.07 16 20 C 0.03 1.09 4.63 86.45 0.40 1.49 16 21 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.05 1.97 6.85 -2.39 -0.02 1.95 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.05 2.20 7.98 -2.39 -0.02 2.18 16 26 H 0.02 0.75 7.88 -2.39 -0.02 0.73 16 27 H 0.34 8.00 9.06 -89.69 -0.81 7.18 16 28 H 0.34 8.11 7.04 -89.70 -0.63 7.48 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.05 1.03 6.75 -2.38 -0.02 1.02 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 35 H 0.03 1.00 7.60 -2.39 -0.02 0.98 16 36 H 0.08 2.51 7.30 -2.39 -0.02 2.50 16 Total: -1.00 -64.22 276.55 -0.57 -64.79 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.42 Total: 19.08 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.52 Total: -23.77 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.52 Total: -106.29 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.85 Total: 46.19 kcal Total: -64.22 -0.57 -64.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642842886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.932 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds