Wall clock time and date at job start Mon Mar 30 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47137 * 2 1 4 4 C 1.52998 * 109.47395 * 240.00286 * 2 1 3 5 5 C 1.50698 * 109.47543 * 175.50100 * 4 2 1 6 6 H 1.08006 * 119.99903 * 355.80148 * 5 4 2 7 7 C 1.37880 * 120.00287 * 176.07456 * 5 4 2 8 8 N 1.31516 * 119.99941 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99984 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99823 * 9 7 5 11 11 H 1.48497 * 109.47257 * 209.99893 * 9 7 5 12 12 H 1.48503 * 109.47049 * 329.99768 * 9 7 5 13 13 N 1.46898 * 109.47039 * 120.00099 * 2 1 3 14 14 C 1.47896 * 111.00289 * 63.73794 * 13 2 1 15 15 C 1.53995 * 107.05778 * 214.15797 * 14 13 2 16 16 C 1.54585 * 105.14029 * 1.21888 * 15 14 13 17 17 C 1.53001 * 110.72283 * 140.31737 * 16 15 14 18 18 N 1.46894 * 110.72742 * 263.42218 * 16 15 14 19 19 C 1.48531 * 110.99734 * 306.33711 * 13 2 1 20 20 H 1.08995 * 109.46847 * 186.90630 * 1 2 3 21 21 H 1.08995 * 109.47224 * 306.90881 * 1 2 3 22 22 H 1.09004 * 109.46727 * 66.90809 * 1 2 3 23 23 H 1.08999 * 109.47579 * 55.50053 * 4 2 1 24 24 H 1.09001 * 109.47134 * 295.50028 * 4 2 1 25 25 H 0.96997 * 120.00012 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.91673 * 333.50802 * 14 13 2 27 27 H 1.09002 * 109.91961 * 94.60512 * 14 13 2 28 28 H 1.08996 * 110.30885 * 120.14439 * 15 14 13 29 29 H 1.09007 * 110.30304 * 242.30312 * 15 14 13 30 30 H 1.08997 * 109.47159 * 61.45182 * 17 16 15 31 31 H 1.09000 * 109.47479 * 181.45914 * 17 16 15 32 32 H 1.09005 * 109.46932 * 301.45373 * 17 16 15 33 33 H 1.00900 * 111.00015 * 298.54440 * 18 16 15 34 34 H 1.00896 * 111.00056 * 62.50504 * 18 16 15 35 35 H 1.09000 * 110.67240 * 278.15295 * 19 13 2 36 36 H 1.08994 * 110.67075 * 41.29413 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5429 -0.6254 -1.3063 6 1 4.0755 -0.0455 -0.5669 7 6 4.2376 -1.2734 -2.3055 8 7 5.5492 -1.1902 -2.3549 9 14 3.3160 -2.2695 -3.5890 10 1 2.9690 -1.3956 -4.7385 11 1 4.1739 -3.3871 -4.0582 12 1 2.0722 -2.8177 -2.9908 13 7 2.0196 -0.6925 1.1994 14 6 1.6203 -2.1165 1.1895 15 6 1.3607 -2.5231 2.6519 16 6 1.6064 -1.2395 3.4775 17 6 0.5728 -1.1105 4.5982 18 7 2.9691 -1.2269 4.0259 19 6 1.4224 -0.1130 2.4297 20 1 -0.3633 -1.0202 0.1236 21 1 -0.3633 0.6171 0.8217 22 1 -0.3633 0.4031 -0.9454 23 1 1.6125 -0.2560 -2.1374 24 1 1.7441 -1.7695 -1.2099 25 1 6.0380 -1.6464 -3.0576 26 1 0.7110 -2.2431 0.6019 27 1 2.4216 -2.7240 0.7687 28 1 0.3314 -2.8603 2.7738 29 1 2.0548 -3.3069 2.9555 30 1 0.6619 -1.9608 5.2743 31 1 0.7486 -0.1872 5.1503 32 1 -0.4288 -1.0915 4.1683 33 1 3.1158 -2.0078 4.6477 34 1 3.6561 -1.2188 3.2870 35 1 1.9604 0.7854 2.7323 36 1 0.3647 0.1031 2.2790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:22 Heat of formation + Delta-G solvation = 1.453818 kcal Electronic energy + Delta-G solvation = -15092.323423 eV Core-core repulsion = 12804.073540 eV Total energy + Delta-G solvation = -2288.249883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46304 -35.61920 -32.56204 -30.96944 -29.10170 -29.00511 -27.60716 -25.27262 -22.86263 -21.63213 -19.29234 -18.44948 -16.60632 -16.03051 -15.51127 -14.81167 -14.25211 -14.01074 -13.47420 -13.08498 -13.04832 -12.48433 -12.31895 -12.09618 -11.83478 -11.71035 -11.32175 -11.16910 -10.92385 -10.67557 -10.62123 -10.43810 -10.15272 -9.64782 -9.47872 -9.06529 -8.45105 -8.42144 -7.56357 -5.92293 -3.86731 3.33481 3.41401 3.43184 4.52233 4.53888 4.72487 4.84074 5.06029 5.25790 5.41872 5.47552 5.53712 5.69291 5.77315 5.79786 5.90815 5.92628 5.98621 6.06306 6.10981 6.19550 6.42081 6.42505 6.54505 6.63664 6.77090 7.08871 7.35150 7.45764 7.64271 7.78015 7.79908 7.95075 8.70446 9.20409 9.70427 11.21612 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.008987 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.024199 B = 3114.860309 C = 3341.138321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.077 0.923 4 C -0.010 4.010 5 C -0.492 4.492 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.484 5.484 14 C 0.037 3.963 15 C -0.162 4.162 16 C 0.114 3.886 17 C -0.132 4.132 18 N -0.833 5.833 19 C 0.034 3.966 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.012 0.988 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.332 0.668 34 H 0.358 0.642 35 H 0.083 0.917 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -1.569 10.244 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.023 4.023 3 H 0.096 0.904 4 C -0.047 4.047 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.207 5.207 14 C -0.091 4.091 15 C -0.202 4.202 16 C 0.020 3.980 17 C -0.190 4.190 18 N -0.363 5.363 19 C -0.095 4.095 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.211 -0.860 10.437 14.626 hybrid contribution -1.195 -1.673 -1.422 2.500 sum -11.406 -2.533 9.015 14.758 Atomic orbital electron populations 1.22585 0.99823 1.01114 1.01323 1.21790 0.89867 0.99015 0.91579 0.90448 1.19729 0.98062 0.95352 0.91602 1.21060 0.89259 1.30585 1.12109 0.90253 1.25009 0.94664 0.96515 0.97550 1.69913 1.06163 1.44607 1.33992 0.86920 0.80142 0.80432 0.82535 1.20551 1.21594 1.19385 1.64955 1.53714 1.01102 1.00974 1.22804 1.00013 0.91656 0.94583 1.23330 1.01266 0.98643 0.96990 1.21637 0.89790 0.93694 0.92852 1.21713 0.97413 1.02026 0.97844 1.58816 1.03329 1.50040 1.24118 1.23433 0.98042 0.97688 0.90307 0.92961 0.93269 0.92407 0.96948 0.96409 0.93058 0.93886 0.90050 0.91914 0.91707 0.92979 0.91902 0.92602 0.85609 0.82754 0.89909 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.35 37.16 0.31 -2.77 16 2 C 0.09 1.71 2.48 -67.72 -0.17 1.54 16 3 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 4 C -0.01 -0.24 3.33 -27.89 -0.09 -0.33 16 5 C -0.49 -13.96 9.38 -34.44 -0.32 -14.28 16 6 H 0.08 2.48 7.99 -52.48 -0.42 2.06 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 9 Si 0.87 21.93 27.55 -169.99 -4.68 17.25 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.50 6.43 56.52 0.36 -6.14 16 13 N -0.48 -9.11 4.94 -222.51 -1.10 -10.21 16 14 C 0.04 0.66 5.05 -2.76 -0.01 0.65 16 15 C -0.16 -2.27 6.24 -25.38 -0.16 -2.43 16 16 C 0.11 1.56 1.20 -129.74 -0.16 1.40 16 17 C -0.13 -1.48 8.80 37.16 0.33 -1.16 16 18 N -0.83 -11.50 9.01 2.23 0.02 -11.48 16 19 C 0.03 0.53 5.40 -1.89 -0.01 0.52 16 20 H 0.05 0.83 6.00 -51.93 -0.31 0.52 16 21 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.01 0.29 7.77 -51.93 -0.40 -0.11 16 24 H 0.02 0.43 5.45 -51.93 -0.28 0.14 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.04 0.75 5.30 -51.93 -0.28 0.48 16 27 H 0.08 1.64 8.11 -51.93 -0.42 1.22 16 28 H 0.06 0.79 7.85 -51.93 -0.41 0.39 16 29 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.59 8.12 -51.93 -0.42 0.16 16 33 H 0.33 3.91 9.04 -39.29 -0.36 3.56 16 34 H 0.36 5.65 8.86 -39.29 -0.35 5.30 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.05 0.71 5.47 -51.93 -0.28 0.43 16 LS Contribution 275.16 15.07 4.15 4.15 Total: -1.00 -30.06 275.16 -7.19 -37.25 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.96 Total: 5.71 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.38 Total: -15.14 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.31 Total: -49.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.68 Total: 17.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.06 -7.19 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds