Wall clock time and date at job start Mon Mar 30 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47137 * 2 1 4 4 C 1.52998 * 109.47395 * 240.00286 * 2 1 3 5 5 C 1.50698 * 109.47543 * 175.50100 * 4 2 1 6 6 H 1.08006 * 119.99903 * 355.80148 * 5 4 2 7 7 C 1.37880 * 120.00287 * 176.07456 * 5 4 2 8 8 N 1.31516 * 119.99941 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99984 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99823 * 9 7 5 11 11 H 1.48497 * 109.47257 * 209.99893 * 9 7 5 12 12 H 1.48503 * 109.47049 * 329.99768 * 9 7 5 13 13 N 1.46898 * 109.47039 * 120.00099 * 2 1 3 14 14 C 1.47896 * 111.00289 * 63.73794 * 13 2 1 15 15 C 1.53995 * 107.05778 * 214.15797 * 14 13 2 16 16 C 1.54585 * 105.14029 * 1.21888 * 15 14 13 17 17 C 1.53001 * 110.72283 * 140.31737 * 16 15 14 18 18 N 1.46894 * 110.72742 * 263.42218 * 16 15 14 19 19 C 1.48531 * 110.99734 * 306.33711 * 13 2 1 20 20 H 1.08995 * 109.46847 * 186.90630 * 1 2 3 21 21 H 1.08995 * 109.47224 * 306.90881 * 1 2 3 22 22 H 1.09004 * 109.46727 * 66.90809 * 1 2 3 23 23 H 1.08999 * 109.47579 * 55.50053 * 4 2 1 24 24 H 1.09001 * 109.47134 * 295.50028 * 4 2 1 25 25 H 0.96997 * 120.00012 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.91673 * 333.50802 * 14 13 2 27 27 H 1.09002 * 109.91961 * 94.60512 * 14 13 2 28 28 H 1.08996 * 110.30885 * 120.14439 * 15 14 13 29 29 H 1.09007 * 110.30304 * 242.30312 * 15 14 13 30 30 H 1.08997 * 109.47159 * 61.45182 * 17 16 15 31 31 H 1.09000 * 109.47479 * 181.45914 * 17 16 15 32 32 H 1.09005 * 109.46932 * 301.45373 * 17 16 15 33 33 H 1.00900 * 111.00015 * 298.54440 * 18 16 15 34 34 H 1.00896 * 111.00056 * 62.50504 * 18 16 15 35 35 H 1.09000 * 110.67240 * 278.15295 * 19 13 2 36 36 H 1.08994 * 110.67075 * 41.29413 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5429 -0.6254 -1.3063 6 1 4.0755 -0.0455 -0.5669 7 6 4.2376 -1.2734 -2.3055 8 7 5.5492 -1.1902 -2.3549 9 14 3.3160 -2.2695 -3.5890 10 1 2.9690 -1.3956 -4.7385 11 1 4.1739 -3.3871 -4.0582 12 1 2.0722 -2.8177 -2.9908 13 7 2.0196 -0.6925 1.1994 14 6 1.6203 -2.1165 1.1895 15 6 1.3607 -2.5231 2.6519 16 6 1.6064 -1.2395 3.4775 17 6 0.5728 -1.1105 4.5982 18 7 2.9691 -1.2269 4.0259 19 6 1.4224 -0.1130 2.4297 20 1 -0.3633 -1.0202 0.1236 21 1 -0.3633 0.6171 0.8217 22 1 -0.3633 0.4031 -0.9454 23 1 1.6125 -0.2560 -2.1374 24 1 1.7441 -1.7695 -1.2099 25 1 6.0380 -1.6464 -3.0576 26 1 0.7110 -2.2431 0.6019 27 1 2.4216 -2.7240 0.7687 28 1 0.3314 -2.8603 2.7738 29 1 2.0548 -3.3069 2.9555 30 1 0.6619 -1.9608 5.2743 31 1 0.7486 -0.1872 5.1503 32 1 -0.4288 -1.0915 4.1683 33 1 3.1158 -2.0078 4.6477 34 1 3.6561 -1.2188 3.2870 35 1 1.9604 0.7854 2.7323 36 1 0.3647 0.1031 2.2790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:21 Heat of formation + Delta-G solvation = -21.541614 kcal Electronic energy + Delta-G solvation = -15093.320580 eV Core-core repulsion = 12804.073540 eV Total energy + Delta-G solvation = -2289.247040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77286 -37.01805 -34.64756 -32.46947 -30.60849 -30.06499 -29.18700 -26.54411 -24.56807 -23.24612 -20.49637 -19.93301 -18.81280 -17.34982 -16.76163 -16.25167 -16.04398 -15.36605 -14.91451 -14.54789 -14.32735 -14.10531 -13.83290 -13.58281 -13.37509 -12.73983 -12.71780 -12.56925 -12.46939 -12.19708 -12.09005 -11.74714 -11.63375 -11.46635 -11.33105 -11.09479 -10.70283 -9.54763 -8.95154 -8.19816 -6.19294 1.34106 1.35594 1.46163 2.39027 3.10886 3.26621 3.58944 3.69630 3.87462 4.10815 4.17553 4.36134 4.42263 4.49715 4.53543 4.71302 4.82918 4.85629 4.90073 4.98345 5.02349 5.09628 5.12830 5.17305 5.23207 5.28331 5.38892 5.57544 5.72313 6.23534 6.31458 6.36661 6.51057 6.68345 6.88732 7.41374 8.97653 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.008987 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.024199 B = 3114.860309 C = 3341.138321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.492 4.492 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.514 5.514 14 C 0.038 3.962 15 C -0.152 4.152 16 C 0.116 3.884 17 C -0.125 4.125 18 N -0.837 5.837 19 C 0.036 3.964 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.018 0.982 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.343 0.657 35 H 0.068 0.932 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -2.425 10.853 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.022 4.022 3 H 0.076 0.924 4 C -0.043 4.043 5 C -0.530 4.530 6 H 0.051 0.949 7 C -0.197 4.197 8 N -0.599 5.599 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.237 5.237 14 C -0.090 4.090 15 C -0.192 4.192 16 C 0.022 3.978 17 C -0.183 4.183 18 N -0.367 5.367 19 C -0.092 4.092 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.090 -1.712 11.076 17.232 hybrid contribution -0.216 -1.336 -1.547 2.055 sum -13.306 -3.048 9.529 16.647 Atomic orbital electron populations 1.22435 0.96307 1.02155 1.02733 1.21600 0.92609 0.97425 0.90573 0.92361 1.19656 0.94689 0.95988 0.93957 1.21273 0.91866 1.29263 1.10602 0.94867 1.25940 0.95475 0.98042 1.00209 1.70085 1.08206 1.46312 1.35312 0.85769 0.79249 0.78705 0.79507 1.19445 1.21453 1.17338 1.64797 1.55287 1.01957 1.01698 1.22725 0.98663 0.90485 0.97103 1.23279 1.02792 0.98849 0.94281 1.21707 0.90287 0.92495 0.93282 1.21673 0.96985 1.02675 0.96997 1.58834 1.03254 1.50844 1.23724 1.23457 0.98519 0.97784 0.89429 0.92190 0.91050 0.91675 0.96427 0.96204 0.93015 0.93417 0.93712 0.89495 0.91338 0.91521 0.91974 0.91189 0.84231 0.84428 0.91326 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 8.35 71.98 0.60 -4.67 16 2 C 0.09 3.41 2.48 44.91 0.11 3.52 16 3 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.01 -0.26 3.33 29.85 0.10 -0.16 16 5 C -0.49 -28.81 9.38 25.60 0.24 -28.57 16 6 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 7 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 8 N -0.96 -61.76 13.96 21.45 0.30 -61.46 16 9 Si 0.94 45.37 27.55 68.60 1.89 47.26 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.25 -11.13 6.43 99.48 0.64 -10.49 16 13 N -0.51 -19.26 4.94 -857.88 -4.24 -23.50 16 14 C 0.04 1.31 5.05 86.45 0.44 1.75 16 15 C -0.15 -3.90 6.24 31.47 0.20 -3.70 16 16 C 0.12 2.92 1.20 4.73 0.01 2.92 16 17 C -0.13 -2.37 8.80 71.98 0.63 -1.73 16 18 N -0.84 -22.30 9.01 -146.85 -1.32 -23.62 16 19 C 0.04 1.07 5.40 86.65 0.47 1.54 16 20 H 0.06 1.70 6.00 -2.39 -0.01 1.68 16 21 H 0.07 1.81 6.36 -2.39 -0.02 1.79 16 22 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.02 0.81 7.77 -2.39 -0.02 0.79 16 24 H 0.02 0.93 5.45 -2.39 -0.01 0.91 16 25 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.05 1.57 5.30 -2.39 -0.01 1.56 16 27 H 0.04 1.83 8.11 -2.39 -0.02 1.81 16 28 H 0.09 1.85 7.85 -2.39 -0.02 1.83 16 29 H 0.07 1.71 8.04 -2.38 -0.02 1.69 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.15 8.12 -2.38 -0.02 1.13 16 33 H 0.34 7.59 9.04 -89.69 -0.81 6.78 16 34 H 0.34 10.99 8.86 -89.70 -0.79 10.20 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.07 1.74 5.47 -2.39 -0.01 1.73 16 Total: -1.00 -66.77 275.16 -0.73 -67.50 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.61 Total: 22.56 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.25 Total: -28.74 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -5.26 Total: -108.58 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.89 Total: 47.26 kcal Total: -66.77 -0.73 -67.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.955 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds