Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47269 * 2 1 4 4 C 1.53004 * 109.46735 * 119.99909 * 2 1 3 5 5 C 1.50705 * 109.47019 * 184.99865 * 4 2 1 6 6 H 1.08001 * 119.99702 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99575 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00887 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99469 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47231 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47165 * 120.00228 * 9 7 5 12 12 H 1.48508 * 109.46749 * 239.99956 * 9 7 5 13 13 N 1.46904 * 109.47201 * 239.99671 * 2 1 3 14 14 C 1.47446 * 110.99911 * 305.91947 * 13 2 1 15 15 C 1.54312 * 107.23276 * 123.25563 * 14 13 2 16 16 C 1.55143 * 103.01714 * 22.28352 * 15 14 13 17 17 C 1.53001 * 110.99183 * 206.21171 * 16 15 14 18 18 N 1.46901 * 110.99177 * 82.43752 * 16 15 14 19 19 C 1.47845 * 110.99741 * 66.76241 * 13 2 1 20 20 H 1.09000 * 109.47323 * 186.57193 * 1 2 3 21 21 H 1.08997 * 109.47128 * 306.58247 * 1 2 3 22 22 H 1.09003 * 109.46501 * 66.57642 * 1 2 3 23 23 H 1.08997 * 109.46994 * 305.00147 * 4 2 1 24 24 H 1.08999 * 109.47409 * 64.99821 * 4 2 1 25 25 H 0.96993 * 120.00698 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.88817 * 242.66234 * 14 13 2 27 27 H 1.09004 * 109.88749 * 3.68997 * 14 13 2 28 28 H 1.09000 * 110.70486 * 140.66319 * 15 14 13 29 29 H 1.09003 * 110.71140 * 263.73084 * 15 14 13 30 30 H 1.09007 * 109.46861 * 58.54677 * 17 16 15 31 31 H 1.09000 * 109.47461 * 178.54800 * 17 16 15 32 32 H 1.09004 * 109.47569 * 298.55350 * 17 16 15 33 33 H 1.00907 * 110.99926 * 61.44758 * 18 16 15 34 34 H 1.00897 * 111.00377 * 185.40536 * 18 16 15 35 35 H 1.08996 * 110.37335 * 332.46632 * 19 13 2 36 36 H 1.08998 * 110.36878 * 94.81007 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0863 0.5393 7 6 4.2302 -1.1936 2.3579 8 7 3.5763 -1.8379 3.2997 9 14 6.0919 -1.0613 2.4370 10 1 6.5836 -0.2910 1.2665 11 1 6.4860 -0.3661 3.6886 12 1 6.6861 -2.4222 2.4185 13 7 2.0197 -0.6926 -1.1994 14 6 1.4345 -2.0417 -1.3065 15 6 0.7237 -2.1245 -2.6737 16 6 1.4283 -1.0176 -3.5014 17 6 0.5089 -0.4888 -4.6042 18 7 2.6937 -1.5068 -4.0649 19 6 1.6829 0.0652 -2.4234 20 1 -0.3634 -1.0209 0.1176 21 1 -0.3633 0.6124 0.8252 22 1 -0.3632 0.4086 -0.9430 23 1 1.6052 -0.2617 2.1370 24 1 1.7515 -1.7715 1.2057 25 1 4.0605 -2.2446 4.0351 26 1 2.2223 -2.7930 -1.2520 27 1 0.7159 -2.1991 -0.5021 28 1 0.8771 -3.1028 -3.1291 29 1 -0.3403 -1.9123 -2.5685 30 1 -0.4036 -0.0935 -4.1579 31 1 1.0180 0.3037 -5.1527 32 1 0.2572 -1.2999 -5.2875 33 1 2.5349 -2.2818 -4.6913 34 1 3.1943 -0.7637 -4.5287 35 1 0.7845 0.6618 -2.2651 36 1 2.5166 0.7034 -2.7160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = -0.477862 kcal Electronic energy + Delta-G solvation = -15015.556987 eV Core-core repulsion = 12727.223339 eV Total energy + Delta-G solvation = -2288.333647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32444 -35.50335 -32.60800 -30.87806 -28.88243 -28.78889 -27.19876 -25.25498 -22.95003 -21.65899 -19.38933 -18.36794 -16.11835 -15.85303 -15.37644 -15.11829 -14.35424 -13.68120 -13.28683 -13.08282 -12.92200 -12.65962 -12.21742 -11.97802 -11.70754 -11.38454 -11.28889 -10.84857 -10.80544 -10.59697 -10.43686 -10.37242 -10.18668 -9.83169 -9.05998 -8.89009 -8.46011 -8.17331 -7.25847 -5.80047 -3.76938 3.44998 3.51953 3.59003 4.54832 4.64318 4.66440 4.79226 5.07797 5.25436 5.45628 5.56738 5.60902 5.66360 5.81052 5.91204 5.95760 5.98406 6.05526 6.12066 6.16694 6.23340 6.43995 6.60526 6.75039 6.86729 7.09648 7.38908 7.59971 7.66340 7.80916 7.99387 8.15430 8.23404 8.68836 9.29485 9.84449 11.32238 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.008632 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.667463 B = 3243.032854 C = 3597.489936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.488 5.488 14 C 0.058 3.942 15 C -0.129 4.129 16 C 0.103 3.897 17 C -0.173 4.173 18 N -0.819 5.819 19 C 0.053 3.947 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.016 0.984 24 H 0.018 0.982 25 H 0.256 0.744 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.334 0.666 34 H 0.338 0.662 35 H 0.043 0.957 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 1.763 -13.986 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.548 5.548 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.211 5.211 14 C -0.070 4.070 15 C -0.168 4.168 16 C 0.010 3.990 17 C -0.233 4.233 18 N -0.348 5.348 19 C -0.076 4.076 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.061 0.939 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.035 1.468 -12.998 14.406 hybrid contribution -0.310 0.339 -0.875 0.988 sum -6.345 1.807 -13.873 15.362 Atomic orbital electron populations 1.22569 1.00055 1.01444 1.00287 1.22086 0.89800 0.98488 0.92716 0.91494 1.19174 0.96413 0.95283 0.89727 1.21232 0.91838 1.32545 1.06731 0.92056 1.25002 0.97990 0.95963 0.96053 1.69974 1.35052 1.37305 1.12454 0.86570 0.86556 0.77539 0.77531 1.19748 1.21525 1.21369 1.63661 1.56191 1.00985 1.00257 1.22637 0.97348 0.92888 0.94140 1.22867 0.98367 0.98278 0.97280 1.21915 0.88615 0.95127 0.93355 1.22491 1.00576 1.00933 0.99261 1.58613 1.20729 1.12585 1.42903 1.23078 0.98981 0.95249 0.90271 0.92762 0.92761 0.94094 0.96538 0.96355 0.93490 0.90775 0.92611 0.91433 0.91943 0.92196 0.92754 0.92841 0.85366 0.84859 0.93887 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.56 37.16 0.32 -2.94 16 2 C 0.08 1.64 2.22 -67.71 -0.15 1.49 16 3 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 4 C 0.03 0.82 4.36 -27.88 -0.12 0.70 16 5 C -0.48 -14.12 8.84 -34.44 -0.30 -14.43 16 6 H 0.06 1.80 7.74 -52.49 -0.41 1.40 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -28.10 13.29 55.43 0.74 -27.36 16 9 Si 0.89 22.81 29.54 -169.99 -5.02 17.78 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 N -0.49 -9.75 4.87 -223.30 -1.09 -10.84 16 14 C 0.06 1.07 5.56 -2.84 -0.02 1.06 16 15 C -0.13 -1.85 6.10 -24.91 -0.15 -2.00 16 16 C 0.10 1.38 1.11 -129.46 -0.14 1.24 16 17 C -0.17 -1.81 8.96 37.16 0.33 -1.48 16 18 N -0.82 -10.62 9.03 2.46 0.02 -10.60 16 19 C 0.05 0.85 5.64 -2.30 -0.01 0.84 16 20 H 0.05 0.96 6.25 -51.93 -0.32 0.63 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.04 0.63 6.19 -51.93 -0.32 0.31 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.51 6.76 -51.93 -0.35 0.16 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.06 1.08 4.83 -51.93 -0.25 0.82 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 30 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.33 3.64 9.07 -39.29 -0.36 3.28 16 34 H 0.34 3.92 9.06 -39.29 -0.36 3.56 16 35 H 0.04 0.66 5.80 -51.93 -0.30 0.36 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -31.42 280.13 -7.50 -38.92 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.02 Total: 2.05 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.35 Total: -14.17 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.33 Total: -48.80 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.42 -7.50 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.442 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds