Wall clock time and date at job start Mon Mar 30 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47269 * 2 1 4 4 C 1.53004 * 109.46735 * 119.99909 * 2 1 3 5 5 C 1.50705 * 109.47019 * 184.99865 * 4 2 1 6 6 H 1.08001 * 119.99702 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99575 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00887 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99469 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47231 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47165 * 120.00228 * 9 7 5 12 12 H 1.48508 * 109.46749 * 239.99956 * 9 7 5 13 13 N 1.46904 * 109.47201 * 239.99671 * 2 1 3 14 14 C 1.47446 * 110.99911 * 305.91947 * 13 2 1 15 15 C 1.54312 * 107.23276 * 123.25563 * 14 13 2 16 16 C 1.55143 * 103.01714 * 22.28352 * 15 14 13 17 17 C 1.53001 * 110.99183 * 206.21171 * 16 15 14 18 18 N 1.46901 * 110.99177 * 82.43752 * 16 15 14 19 19 C 1.47845 * 110.99741 * 66.76241 * 13 2 1 20 20 H 1.09000 * 109.47323 * 186.57193 * 1 2 3 21 21 H 1.08997 * 109.47128 * 306.58247 * 1 2 3 22 22 H 1.09003 * 109.46501 * 66.57642 * 1 2 3 23 23 H 1.08997 * 109.46994 * 305.00147 * 4 2 1 24 24 H 1.08999 * 109.47409 * 64.99821 * 4 2 1 25 25 H 0.96993 * 120.00698 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.88817 * 242.66234 * 14 13 2 27 27 H 1.09004 * 109.88749 * 3.68997 * 14 13 2 28 28 H 1.09000 * 110.70486 * 140.66319 * 15 14 13 29 29 H 1.09003 * 110.71140 * 263.73084 * 15 14 13 30 30 H 1.09007 * 109.46861 * 58.54677 * 17 16 15 31 31 H 1.09000 * 109.47461 * 178.54800 * 17 16 15 32 32 H 1.09004 * 109.47569 * 298.55350 * 17 16 15 33 33 H 1.00907 * 110.99926 * 61.44758 * 18 16 15 34 34 H 1.00897 * 111.00377 * 185.40536 * 18 16 15 35 35 H 1.08996 * 110.37335 * 332.46632 * 19 13 2 36 36 H 1.08998 * 110.36878 * 94.81007 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0863 0.5393 7 6 4.2302 -1.1936 2.3579 8 7 3.5763 -1.8379 3.2997 9 14 6.0919 -1.0613 2.4370 10 1 6.5836 -0.2910 1.2665 11 1 6.4860 -0.3661 3.6886 12 1 6.6861 -2.4222 2.4185 13 7 2.0197 -0.6926 -1.1994 14 6 1.4345 -2.0417 -1.3065 15 6 0.7237 -2.1245 -2.6737 16 6 1.4283 -1.0176 -3.5014 17 6 0.5089 -0.4888 -4.6042 18 7 2.6937 -1.5068 -4.0649 19 6 1.6829 0.0652 -2.4234 20 1 -0.3634 -1.0209 0.1176 21 1 -0.3633 0.6124 0.8252 22 1 -0.3632 0.4086 -0.9430 23 1 1.6052 -0.2617 2.1370 24 1 1.7515 -1.7715 1.2057 25 1 4.0605 -2.2446 4.0351 26 1 2.2223 -2.7930 -1.2520 27 1 0.7159 -2.1991 -0.5021 28 1 0.8771 -3.1028 -3.1291 29 1 -0.3403 -1.9123 -2.5685 30 1 -0.4036 -0.0935 -4.1579 31 1 1.0180 0.3037 -5.1527 32 1 0.2572 -1.2999 -5.2875 33 1 2.5349 -2.2818 -4.6913 34 1 3.1943 -0.7637 -4.5287 35 1 0.7845 0.6618 -2.2651 36 1 2.5166 0.7034 -2.7160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:24 Heat of formation + Delta-G solvation = -24.034497 kcal Electronic energy + Delta-G solvation = -15016.578479 eV Core-core repulsion = 12727.223339 eV Total energy + Delta-G solvation = -2289.355140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67111 -36.93296 -34.69947 -32.41888 -30.24328 -29.86344 -29.08206 -26.52398 -24.90118 -23.23655 -20.56621 -19.94759 -18.34790 -17.27466 -16.56450 -16.39009 -16.37486 -15.03339 -14.91167 -14.29305 -14.19960 -13.82868 -13.65781 -13.52177 -13.25645 -13.20030 -12.70084 -12.65110 -12.44756 -12.31274 -12.04548 -11.74417 -11.65133 -11.49855 -11.07797 -10.95402 -10.48260 -9.42242 -8.76474 -8.09600 -6.14299 1.40378 1.41724 1.55567 2.48127 3.20405 3.32551 3.58470 3.68512 3.88129 4.15244 4.22978 4.41151 4.49285 4.52406 4.57766 4.71730 4.81362 4.88368 4.94320 4.99676 5.03463 5.13533 5.21389 5.27038 5.32906 5.39039 5.48991 5.73011 5.91041 6.36426 6.40536 6.50700 6.63194 6.76768 6.99587 7.51444 9.02745 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.008632 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.667463 B = 3243.032854 C = 3597.489936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.086 3.914 3 H 0.059 0.941 4 C 0.038 3.962 5 C -0.498 4.498 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.517 5.517 14 C 0.058 3.942 15 C -0.119 4.119 16 C 0.112 3.888 17 C -0.163 4.163 18 N -0.837 5.837 19 C 0.050 3.950 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.069 0.931 23 H -0.009 1.009 24 H -0.007 1.007 25 H 0.259 0.741 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.347 0.653 34 H 0.346 0.654 35 H 0.057 0.943 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 2.330 -16.011 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.077 0.923 4 C 0.001 3.999 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.158 4.158 16 C 0.018 3.982 17 C -0.223 4.223 18 N -0.369 5.369 19 C -0.078 4.078 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.009 0.991 24 H 0.011 0.989 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.323 2.042 -15.045 16.448 hybrid contribution -0.197 0.147 -0.224 0.333 sum -6.521 2.189 -15.270 16.747 Atomic orbital electron populations 1.22414 0.97075 1.01654 1.02017 1.21756 0.92158 0.97093 0.91263 0.92261 1.19022 0.95201 0.94117 0.91565 1.21522 0.93394 1.32261 1.06481 0.92747 1.25867 1.03033 0.95625 0.95722 1.70095 1.37031 1.38163 1.13110 0.85498 0.80533 0.77684 0.77904 1.19118 1.20490 1.20902 1.63450 1.57445 1.01864 1.01217 1.22512 0.96268 0.91550 0.96641 1.22812 0.98863 0.99538 0.94581 1.21819 0.89294 0.93584 0.93480 1.22379 0.99920 1.01703 0.98290 1.58554 1.21020 1.13556 1.43793 1.23155 0.99311 0.95852 0.89435 0.93025 0.92415 0.91182 0.99088 0.98902 0.93261 0.94145 0.93974 0.90267 0.90165 0.91694 0.91729 0.91286 0.83938 0.83983 0.92541 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 8.56 71.98 0.62 -5.30 16 2 C 0.09 3.68 2.22 44.92 0.10 3.78 16 3 H 0.06 2.59 8.12 -2.39 -0.02 2.57 16 4 C 0.04 2.08 4.36 29.85 0.13 2.21 16 5 C -0.50 -29.77 8.84 25.60 0.23 -29.54 16 6 H 0.05 3.26 7.74 -2.91 -0.02 3.24 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 8 N -0.94 -59.71 13.29 21.44 0.28 -59.43 16 9 Si 0.96 47.38 29.54 68.60 2.03 49.40 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 13 N -0.52 -20.57 4.87 -860.37 -4.19 -24.76 16 14 C 0.06 2.18 5.56 86.64 0.48 2.66 16 15 C -0.12 -3.15 6.10 31.77 0.19 -2.96 16 16 C 0.11 2.68 1.11 4.91 0.01 2.69 16 17 C -0.16 -2.76 8.96 71.98 0.65 -2.12 16 18 N -0.84 -19.96 9.03 -146.14 -1.32 -21.28 16 19 C 0.05 1.53 5.64 86.77 0.49 2.02 16 20 H 0.05 1.79 6.25 -2.39 -0.01 1.77 16 21 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.07 1.98 6.19 -2.39 -0.01 1.97 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H -0.01 -0.43 6.76 -2.39 -0.02 -0.45 16 25 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.66 4.83 -2.39 -0.01 1.65 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.86 8.04 -2.39 -0.02 1.84 16 30 H 0.06 1.06 8.11 -2.38 -0.02 1.04 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.35 6.69 9.07 -89.69 -0.81 5.88 16 34 H 0.35 7.27 9.06 -89.70 -0.81 6.45 16 35 H 0.06 1.56 5.80 -2.39 -0.01 1.55 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -68.81 280.13 -0.41 -69.22 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.56 Total: 13.36 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.35 Total: -26.51 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -5.23 Total: -105.47 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Total: -68.81 -0.41 -69.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.190 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds