Wall clock time and date at job start Mon Mar 30 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47134 * 2 1 4 4 C 1.52996 * 109.47054 * 120.00295 * 2 1 3 5 5 C 1.50697 * 109.47393 * 185.00046 * 4 2 1 6 6 H 1.07999 * 119.99540 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00340 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00031 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99784 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46695 * 90.00368 * 9 7 5 11 11 H 1.48499 * 109.47288 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00555 * 9 7 5 13 13 N 1.46900 * 109.46939 * 239.99886 * 2 1 3 14 14 C 1.48808 * 111.18630 * 311.13506 * 13 2 1 15 15 C 1.54937 * 103.34604 * 159.50375 * 14 13 2 16 16 C 1.54590 * 102.92639 * 322.69447 * 15 14 13 17 17 C 1.53001 * 110.31260 * 140.87052 * 16 15 14 18 18 N 1.46897 * 110.39249 * 262.99856 * 16 15 14 19 19 C 1.47899 * 110.99948 * 68.47649 * 13 2 1 20 20 H 1.08999 * 109.47075 * 187.70275 * 1 2 3 21 21 H 1.09001 * 109.47138 * 307.70638 * 1 2 3 22 22 H 1.09005 * 109.46986 * 67.70356 * 1 2 3 23 23 H 1.09004 * 109.47058 * 305.00057 * 4 2 1 24 24 H 1.08998 * 109.47573 * 64.99357 * 4 2 1 25 25 H 0.97004 * 119.99732 * 179.97438 * 8 7 5 26 26 H 1.09001 * 110.51741 * 41.07809 * 14 13 2 27 27 H 1.08994 * 110.70006 * 278.02707 * 14 13 2 28 28 H 1.08998 * 110.72651 * 204.33358 * 15 14 13 29 29 H 1.09002 * 110.87271 * 81.12335 * 15 14 13 30 30 H 1.08997 * 109.47050 * 304.28480 * 17 16 15 31 31 H 1.08997 * 109.46919 * 64.28809 * 17 16 15 32 32 H 1.09005 * 109.47090 * 184.28321 * 17 16 15 33 33 H 1.00904 * 110.99857 * 295.76127 * 18 16 15 34 34 H 1.00898 * 111.00528 * 59.71681 * 18 16 15 35 35 H 1.08995 * 109.92010 * 94.79621 * 19 13 2 36 36 H 1.09005 * 109.91785 * 333.70128 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1928 2.3583 8 7 5.5410 -1.0995 2.4140 9 14 3.3013 -2.1067 3.6966 10 1 3.1697 -3.5370 3.3192 11 1 4.0450 -1.9991 4.9774 12 1 1.9506 -1.5109 3.8568 13 7 2.0197 -0.6925 -1.1994 14 6 1.3384 -2.0032 -1.3795 15 6 1.5552 -2.3156 -2.8815 16 6 1.4289 -0.9254 -3.5456 17 6 2.4566 -0.7783 -4.6695 18 7 0.0704 -0.7298 -4.0692 19 6 1.7188 0.0856 -2.4207 20 1 -0.3633 -1.0184 0.1377 21 1 -0.3633 0.6285 0.8130 22 1 -0.3633 0.3899 -0.9509 23 1 1.6054 -0.2618 2.1369 24 1 1.7516 -1.7715 1.2056 25 1 6.0253 -1.5057 3.1498 26 1 0.2755 -1.9153 -1.1544 27 1 1.8028 -2.7676 -0.7565 28 1 0.7832 -2.9909 -3.2504 29 1 2.5465 -2.7357 -3.0516 30 1 3.4557 -0.9623 -4.2746 31 1 2.2388 -1.4992 -5.4575 32 1 2.4072 0.2315 -5.0771 33 1 -0.1307 -1.3874 -4.8076 34 1 -0.6145 -0.7943 -3.3311 35 1 2.5761 0.7031 -2.6882 36 1 0.8452 0.7158 -2.2536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:27 Heat of formation + Delta-G solvation = -21.626840 kcal Electronic energy + Delta-G solvation = -15028.647094 eV Core-core repulsion = 12739.396359 eV Total energy + Delta-G solvation = -2289.250736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77530 -37.04007 -34.67431 -32.61911 -30.46920 -30.12649 -29.25447 -26.42475 -24.71095 -23.22760 -20.47728 -20.20226 -18.78759 -17.11788 -16.73034 -16.40181 -16.08280 -15.49231 -14.92962 -14.68238 -14.36652 -13.91432 -13.79457 -13.64174 -13.29246 -12.88194 -12.72544 -12.59657 -12.55557 -12.15239 -11.93601 -11.84338 -11.69867 -11.48107 -11.34071 -11.15382 -10.69391 -9.59756 -8.97265 -8.19102 -6.18495 1.35015 1.37037 1.48142 2.40337 3.09141 3.23206 3.58131 3.71735 3.82031 4.06198 4.14340 4.32137 4.42042 4.45552 4.52468 4.64986 4.75565 4.87571 4.91685 4.96478 5.07454 5.10742 5.15674 5.16584 5.17694 5.29391 5.38359 5.52287 5.73904 6.09192 6.32997 6.37566 6.51275 6.64249 6.89493 7.42064 8.98609 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042633 B = 0.008516 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.607097 B = 3286.995146 C = 3504.791335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 H 0.055 0.945 4 C 0.001 3.999 5 C -0.493 4.493 6 H 0.032 0.968 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.519 5.519 14 C 0.030 3.970 15 C -0.145 4.145 16 C 0.115 3.885 17 C -0.128 4.128 18 N -0.832 5.832 19 C 0.042 3.958 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.020 0.980 24 H 0.014 0.986 25 H 0.261 0.739 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.351 0.649 34 H 0.343 0.657 35 H 0.060 0.940 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 -1.987 -11.311 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.021 4.021 3 H 0.074 0.926 4 C -0.036 4.036 5 C -0.531 4.531 6 H 0.050 0.950 7 C -0.199 4.199 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.170 1.170 13 N -0.243 5.243 14 C -0.097 4.097 15 C -0.185 4.185 16 C 0.021 3.979 17 C -0.186 4.186 18 N -0.363 5.363 19 C -0.086 4.086 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.079 0.921 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.853 -1.345 -11.354 17.203 hybrid contribution -0.492 -1.151 1.206 1.738 sum -13.346 -2.496 -10.148 16.951 Atomic orbital electron populations 1.22413 0.96105 1.02341 1.02514 1.21613 0.92737 0.97011 0.90747 0.92647 1.19537 0.94531 0.95623 0.93945 1.21305 0.92104 1.32644 1.07067 0.94999 1.25980 0.95545 0.97597 1.00790 1.70092 1.08498 1.47969 1.33561 0.85725 0.79719 0.79267 0.78267 1.19710 1.21315 1.17033 1.64884 1.54778 1.03265 1.01405 1.23290 0.97456 0.92120 0.96846 1.23311 1.02663 0.98013 0.94482 1.21477 0.90460 0.92192 0.93723 1.21726 0.97183 1.02525 0.97182 1.58902 1.01869 1.59729 1.15844 1.22961 0.99862 0.96196 0.89618 0.91897 0.91633 0.91379 0.96133 0.96750 0.93006 0.91993 0.92693 0.89238 0.91663 0.93071 0.91119 0.91992 0.83427 0.84383 0.92127 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.18 8.17 71.99 0.59 -4.60 16 2 C 0.09 3.47 2.22 44.92 0.10 3.57 16 3 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 4 C 0.00 0.06 3.53 29.85 0.11 0.16 16 5 C -0.49 -29.26 9.39 25.60 0.24 -29.02 16 6 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 7 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 8 N -0.96 -62.43 13.96 21.45 0.30 -62.13 16 9 Si 0.95 45.68 27.47 68.60 1.88 47.56 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 13 N -0.52 -19.77 4.96 -857.11 -4.25 -24.02 16 14 C 0.03 0.98 5.59 86.60 0.48 1.46 16 15 C -0.14 -3.71 6.32 31.80 0.20 -3.51 16 16 C 0.12 2.81 1.19 4.41 0.01 2.81 16 17 C -0.13 -2.93 8.50 71.98 0.61 -2.32 16 18 N -0.83 -15.91 8.81 -148.12 -1.31 -17.22 16 19 C 0.04 1.31 5.84 86.45 0.50 1.82 16 20 H 0.06 1.76 6.42 -2.39 -0.02 1.75 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.07 1.75 6.29 -2.38 -0.01 1.73 16 23 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 24 H 0.01 0.67 6.56 -2.39 -0.02 0.65 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.06 1.73 5.46 -2.39 -0.01 1.72 16 27 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 28 H 0.09 1.78 8.05 -2.39 -0.02 1.76 16 29 H 0.06 1.85 7.84 -2.39 -0.02 1.83 16 30 H 0.05 1.33 8.11 -2.39 -0.02 1.31 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.35 5.22 9.03 -89.69 -0.81 4.41 16 34 H 0.34 6.20 8.98 -89.70 -0.81 5.39 16 35 H 0.06 2.07 7.68 -2.39 -0.02 2.05 16 36 H 0.06 1.66 5.80 -2.38 -0.01 1.64 16 Total: -1.00 -68.49 276.08 -0.67 -69.17 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.61 Total: 16.06 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.30 Total: -29.42 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -5.26 Total: -103.37 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -68.49 -0.67 -69.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.539 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds