Wall clock time and date at job start Mon Mar 30 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47426 * 2 1 4 4 C 1.53005 * 109.46882 * 240.00382 * 2 1 3 5 5 C 1.50701 * 109.46634 * 175.00450 * 4 2 1 6 6 H 1.08002 * 120.00700 * 359.97438 * 5 4 2 7 7 C 1.37888 * 119.99668 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99887 * 359.71747 * 7 5 4 9 9 Si 1.86797 * 119.99713 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47079 * 269.71883 * 9 7 5 11 11 H 1.48502 * 109.47555 * 29.72125 * 9 7 5 12 12 H 1.48505 * 109.47215 * 149.72317 * 9 7 5 13 13 N 1.46897 * 109.47101 * 120.00810 * 2 1 3 14 14 C 1.47843 * 111.00137 * 57.57797 * 13 2 1 15 15 C 1.54916 * 104.79670 * 213.63978 * 14 13 2 16 16 C 1.55144 * 101.65225 * 37.07026 * 15 14 13 17 17 C 1.52993 * 110.85406 * 205.89572 * 16 15 14 18 18 N 1.46897 * 110.70499 * 82.72787 * 16 15 14 19 19 C 1.47449 * 110.99642 * 296.73638 * 13 2 1 20 20 H 1.08993 * 109.47146 * 293.02785 * 1 2 3 21 21 H 1.09004 * 109.46616 * 53.02658 * 1 2 3 22 22 H 1.09000 * 109.47011 * 173.02257 * 1 2 3 23 23 H 1.08993 * 109.47209 * 55.00128 * 4 2 1 24 24 H 1.09003 * 109.47090 * 294.99920 * 4 2 1 25 25 H 0.96998 * 120.00048 * 0.27909 * 8 7 5 26 26 H 1.09004 * 110.37569 * 332.46859 * 14 13 2 27 27 H 1.08995 * 110.37548 * 94.81383 * 14 13 2 28 28 H 1.09004 * 110.99020 * 278.97975 * 15 14 13 29 29 H 1.08995 * 111.02089 * 155.17890 * 15 14 13 30 30 H 1.09005 * 109.47244 * 173.68835 * 17 16 15 31 31 H 1.09007 * 109.46897 * 293.68486 * 17 16 15 32 32 H 1.08997 * 109.47669 * 53.68685 * 17 16 15 33 33 H 1.00910 * 110.99863 * 66.40165 * 18 16 15 34 34 H 1.00899 * 111.00087 * 190.35262 * 18 16 15 35 35 H 1.08997 * 109.89172 * 242.66268 * 19 13 2 36 36 H 1.09006 * 109.88864 * 3.85476 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 3.5768 -1.8411 -3.2975 9 14 6.0920 -1.0603 -2.4374 10 1 6.4698 0.1590 -3.1963 11 1 6.6412 -0.9761 -1.0602 12 1 6.6450 -2.2585 -3.1184 13 7 2.0197 -0.6927 1.1993 14 6 1.4986 -2.0748 1.2628 15 6 1.3128 -2.3584 2.7744 16 6 0.8220 -0.9813 3.2937 17 6 1.1674 -0.8026 4.7734 18 7 -0.6230 -0.8296 3.0774 19 6 1.6119 0.0196 2.4243 20 1 -0.3633 0.4020 0.9457 21 1 -0.3633 0.6181 -0.8211 22 1 -0.3633 -1.0201 -0.1248 23 1 1.6054 -0.2616 -2.1370 24 1 1.7516 -1.7715 -1.2057 25 1 2.6101 -1.9095 -3.2567 26 1 0.5428 -2.1443 0.7434 27 1 2.2174 -2.7715 0.8316 28 1 2.2590 -2.6362 3.2388 29 1 0.5590 -3.1286 2.9379 30 1 0.9149 0.2108 5.0856 31 1 0.5994 -1.5182 5.3680 32 1 2.2338 -0.9731 4.9208 33 1 -1.1439 -1.4822 3.6440 34 1 -0.9176 0.1189 3.2552 35 1 2.4940 0.3640 2.9640 36 1 0.9776 0.8678 2.1663 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642857412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:30 Heat of formation + Delta-G solvation = -4.893374 kcal Electronic energy + Delta-G solvation = -15105.977470 eV Core-core repulsion = 12817.452352 eV Total energy + Delta-G solvation = -2288.525118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.43633 -35.50697 -32.86189 -31.11721 -28.90218 -28.68237 -26.79852 -25.15081 -22.80376 -21.80968 -19.41051 -18.75027 -16.56641 -15.76569 -15.45534 -15.00841 -14.26175 -13.61262 -13.20110 -13.08120 -13.00862 -12.74602 -12.48685 -11.97434 -11.57641 -11.34252 -11.16253 -10.96757 -10.71291 -10.62295 -10.55301 -10.29310 -10.05548 -9.95506 -9.29974 -8.68618 -8.36652 -8.14374 -7.35426 -6.14961 -3.79627 3.54542 3.59457 3.75335 4.46498 4.63916 4.70076 4.73592 5.08927 5.13100 5.51674 5.56072 5.62490 5.74210 5.81756 5.92348 5.96084 6.05380 6.11878 6.13447 6.17101 6.26012 6.52077 6.56210 6.73956 6.83958 7.03377 7.21895 7.36218 7.42306 7.59748 7.86451 8.04283 8.48263 8.74712 9.11558 9.89319 11.25404 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043683 B = 0.008332 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.826326 B = 3359.672353 C = 3620.406646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.064 0.936 4 C 0.017 3.983 5 C -0.570 4.570 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.925 5.925 9 Si 1.070 2.930 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.497 5.497 14 C 0.054 3.946 15 C -0.115 4.115 16 C 0.090 3.910 17 C -0.170 4.170 18 N -0.830 5.830 19 C 0.052 3.948 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.006 0.994 24 H 0.009 0.991 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.336 0.664 34 H 0.337 0.663 35 H 0.069 0.931 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 1.830 14.384 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.083 0.917 4 C -0.020 4.020 5 C -0.609 4.609 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.563 5.563 9 Si 0.899 3.101 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.220 5.220 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.004 4.004 17 C -0.230 4.230 18 N -0.360 5.360 19 C -0.077 4.077 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.901 1.196 12.678 13.645 hybrid contribution -2.325 0.756 2.004 3.161 sum -7.226 1.952 14.682 16.480 Atomic orbital electron populations 1.22521 0.99041 1.01443 1.00830 1.21865 0.90427 0.97902 0.91766 0.91730 1.19287 0.97302 0.94718 0.90671 1.22017 0.91627 1.37111 1.10150 0.92815 1.25776 1.06594 0.94088 0.93061 1.70754 1.10054 1.40812 1.34682 0.83533 0.74933 0.76224 0.75368 1.21847 1.21536 1.21370 1.63779 1.56409 1.01317 1.00497 1.22895 0.99044 0.91297 0.94083 1.22748 1.00290 0.95083 0.97232 1.22107 0.88076 0.97206 0.92988 1.22469 1.02575 1.01056 0.96873 1.58881 1.03566 1.09770 1.63765 1.22919 0.96997 0.95847 0.91940 0.92491 0.93737 0.92824 0.97589 0.97323 0.92434 0.92854 0.90700 0.90922 0.91590 0.92959 0.92988 0.91696 0.85148 0.85011 0.91246 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.53 37.16 0.32 -3.01 16 2 C 0.09 1.93 2.14 -67.71 -0.14 1.78 16 3 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.02 0.46 3.67 -27.88 -0.10 0.36 16 5 C -0.57 -16.74 8.84 -34.44 -0.30 -17.04 16 6 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.01 0.19 5.46 -17.82 -0.10 0.10 16 8 N -0.92 -29.33 13.65 55.43 0.76 -28.58 16 9 Si 1.07 26.60 29.90 -169.99 -5.08 21.52 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.50 -9.99 4.90 -223.28 -1.09 -11.08 16 14 C 0.05 1.02 5.14 -2.29 -0.01 1.01 16 15 C -0.12 -1.68 6.22 -24.59 -0.15 -1.83 16 16 C 0.09 1.16 1.08 -129.78 -0.14 1.02 16 17 C -0.17 -1.79 8.77 37.15 0.33 -1.46 16 18 N -0.83 -9.51 7.89 2.20 0.02 -9.50 16 19 C 0.05 0.83 5.61 -2.83 -0.02 0.81 16 20 H 0.06 0.94 5.25 -51.93 -0.27 0.66 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 1.02 6.21 -51.93 -0.32 0.70 16 23 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 24 H 0.01 0.24 6.91 -51.93 -0.36 -0.12 16 25 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 26 H 0.05 1.04 5.47 -51.93 -0.28 0.75 16 27 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.34 3.25 9.03 -39.29 -0.35 2.90 16 34 H 0.34 3.45 8.90 -39.29 -0.35 3.10 16 35 H 0.07 1.10 7.82 -51.93 -0.41 0.69 16 36 H 0.05 0.83 6.05 -51.93 -0.31 0.51 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -31.66 276.70 -7.51 -39.17 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.95 Total: 2.56 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.33 Total: -18.26 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.32 Total: -49.15 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.08 Total: 21.52 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.66 -7.51 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.273 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds