Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47426 * 2 1 4 4 C 1.53005 * 109.46882 * 240.00382 * 2 1 3 5 5 C 1.50701 * 109.46634 * 175.00450 * 4 2 1 6 6 H 1.08002 * 120.00700 * 359.97438 * 5 4 2 7 7 C 1.37888 * 119.99668 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99887 * 359.71747 * 7 5 4 9 9 Si 1.86797 * 119.99713 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47079 * 269.71883 * 9 7 5 11 11 H 1.48502 * 109.47555 * 29.72125 * 9 7 5 12 12 H 1.48505 * 109.47215 * 149.72317 * 9 7 5 13 13 N 1.46897 * 109.47101 * 120.00810 * 2 1 3 14 14 C 1.47843 * 111.00137 * 57.57797 * 13 2 1 15 15 C 1.54916 * 104.79670 * 213.63978 * 14 13 2 16 16 C 1.55144 * 101.65225 * 37.07026 * 15 14 13 17 17 C 1.52993 * 110.85406 * 205.89572 * 16 15 14 18 18 N 1.46897 * 110.70499 * 82.72787 * 16 15 14 19 19 C 1.47449 * 110.99642 * 296.73638 * 13 2 1 20 20 H 1.08993 * 109.47146 * 293.02785 * 1 2 3 21 21 H 1.09004 * 109.46616 * 53.02658 * 1 2 3 22 22 H 1.09000 * 109.47011 * 173.02257 * 1 2 3 23 23 H 1.08993 * 109.47209 * 55.00128 * 4 2 1 24 24 H 1.09003 * 109.47090 * 294.99920 * 4 2 1 25 25 H 0.96998 * 120.00048 * 0.27909 * 8 7 5 26 26 H 1.09004 * 110.37569 * 332.46859 * 14 13 2 27 27 H 1.08995 * 110.37548 * 94.81383 * 14 13 2 28 28 H 1.09004 * 110.99020 * 278.97975 * 15 14 13 29 29 H 1.08995 * 111.02089 * 155.17890 * 15 14 13 30 30 H 1.09005 * 109.47244 * 173.68835 * 17 16 15 31 31 H 1.09007 * 109.46897 * 293.68486 * 17 16 15 32 32 H 1.08997 * 109.47669 * 53.68685 * 17 16 15 33 33 H 1.00910 * 110.99863 * 66.40165 * 18 16 15 34 34 H 1.00899 * 111.00087 * 190.35262 * 18 16 15 35 35 H 1.08997 * 109.89172 * 242.66268 * 19 13 2 36 36 H 1.09006 * 109.88864 * 3.85476 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0856 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 3.5768 -1.8411 -3.2975 9 14 6.0920 -1.0603 -2.4374 10 1 6.4698 0.1590 -3.1963 11 1 6.6412 -0.9761 -1.0602 12 1 6.6450 -2.2585 -3.1184 13 7 2.0197 -0.6927 1.1993 14 6 1.4986 -2.0748 1.2628 15 6 1.3128 -2.3584 2.7744 16 6 0.8220 -0.9813 3.2937 17 6 1.1674 -0.8026 4.7734 18 7 -0.6230 -0.8296 3.0774 19 6 1.6119 0.0196 2.4243 20 1 -0.3633 0.4020 0.9457 21 1 -0.3633 0.6181 -0.8211 22 1 -0.3633 -1.0201 -0.1248 23 1 1.6054 -0.2616 -2.1370 24 1 1.7516 -1.7715 -1.2057 25 1 2.6101 -1.9095 -3.2567 26 1 0.5428 -2.1443 0.7434 27 1 2.2174 -2.7715 0.8316 28 1 2.2590 -2.6362 3.2388 29 1 0.5590 -3.1286 2.9379 30 1 0.9149 0.2108 5.0856 31 1 0.5994 -1.5182 5.3680 32 1 2.2338 -0.9731 4.9208 33 1 -1.1439 -1.4822 3.6440 34 1 -0.9176 0.1189 3.2552 35 1 2.4940 0.3640 2.9640 36 1 0.9776 0.8678 2.1663 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642857412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = -28.541358 kcal Electronic energy + Delta-G solvation = -15107.002923 eV Core-core repulsion = 12817.452352 eV Total energy + Delta-G solvation = -2289.550572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79969 -37.01678 -34.90948 -32.61495 -30.24640 -29.81922 -28.70126 -26.45558 -24.88161 -23.41661 -20.53362 -20.41265 -18.77655 -17.10495 -16.62786 -16.34131 -15.65483 -15.61487 -15.06516 -14.55218 -14.31524 -13.78058 -13.70161 -13.44948 -13.21452 -13.02674 -12.75926 -12.74715 -12.49898 -11.98098 -11.95446 -11.92955 -11.78122 -11.50635 -11.19735 -10.59173 -10.47288 -9.57431 -8.90044 -8.57877 -6.23240 1.52497 1.62902 1.80842 2.61714 3.17749 3.30678 3.53559 3.55596 3.91964 4.07560 4.17234 4.41159 4.46243 4.52445 4.57059 4.59562 4.77673 4.87120 4.89393 4.99993 5.01800 5.09936 5.15178 5.17711 5.23907 5.26588 5.33387 5.57311 6.12167 6.30320 6.32298 6.33779 6.45384 6.66041 6.72667 7.54720 8.82701 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043683 B = 0.008332 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.826326 B = 3359.672353 C = 3620.406646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 H 0.055 0.945 4 C 0.022 3.978 5 C -0.578 4.578 6 H 0.048 0.952 7 C -0.048 4.048 8 N -0.948 5.948 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.285 1.285 13 N -0.523 5.523 14 C 0.054 3.946 15 C -0.107 4.107 16 C 0.103 3.897 17 C -0.162 4.162 18 N -0.838 5.838 19 C 0.049 3.951 20 H 0.083 0.917 21 H 0.045 0.955 22 H 0.045 0.955 23 H -0.017 1.017 24 H -0.012 1.012 25 H 0.251 0.749 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.347 0.653 35 H 0.072 0.928 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 2.470 16.605 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 H 0.073 0.927 4 C -0.015 4.015 5 C -0.617 4.617 6 H 0.066 0.934 7 C -0.243 4.243 8 N -0.587 5.587 9 Si 0.941 3.059 10 H -0.199 1.199 11 H -0.198 1.198 12 H -0.211 1.211 13 N -0.246 5.246 14 C -0.073 4.073 15 C -0.145 4.145 16 C 0.010 3.990 17 C -0.222 4.222 18 N -0.370 5.370 19 C -0.079 4.079 20 H 0.101 0.899 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.001 0.999 24 H 0.006 0.994 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.115 1.850 14.926 15.886 hybrid contribution -2.299 0.557 1.306 2.702 sum -7.413 2.408 16.232 18.007 Atomic orbital electron populations 1.22353 0.96410 1.01191 1.02322 1.21579 0.92440 0.96551 0.90624 0.92663 1.19179 0.96073 0.93831 0.92430 1.22316 0.93154 1.36460 1.09744 0.93396 1.27339 1.11105 0.93254 0.92637 1.70895 1.09308 1.42627 1.35913 0.82908 0.69586 0.76933 0.76469 1.19913 1.19788 1.21081 1.63595 1.57587 1.02072 1.01377 1.22785 0.97225 0.90179 0.97142 1.22706 1.01202 0.96890 0.93746 1.21881 0.88620 0.94566 0.93951 1.22377 1.02574 1.02443 0.94788 1.58776 1.02731 1.10947 1.64568 1.22991 0.97866 0.96430 0.90642 0.89870 0.93540 0.93610 0.99870 0.99406 0.93979 0.93721 0.94509 0.90710 0.89783 0.91663 0.91218 0.92169 0.83558 0.83872 0.91006 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 8.53 71.98 0.61 -5.35 16 2 C 0.10 4.25 2.14 44.92 0.10 4.35 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.02 1.21 3.67 29.85 0.11 1.32 16 5 C -0.58 -34.76 8.84 25.60 0.23 -34.54 16 6 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 7 C -0.05 -2.93 5.46 84.66 0.46 -2.47 16 8 N -0.95 -61.71 13.65 21.45 0.29 -61.41 16 9 Si 1.12 53.57 29.90 68.60 2.05 55.62 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 N -0.52 -20.97 4.90 -860.32 -4.21 -25.18 16 14 C 0.05 2.07 5.14 86.78 0.45 2.52 16 15 C -0.11 -2.94 6.22 31.98 0.20 -2.74 16 16 C 0.10 2.38 1.08 4.71 0.01 2.39 16 17 C -0.16 -2.80 8.77 71.98 0.63 -2.17 16 18 N -0.84 -16.42 7.89 -146.94 -1.16 -17.58 16 19 C 0.05 1.47 5.61 86.65 0.49 1.96 16 20 H 0.08 2.56 5.25 -2.39 -0.01 2.55 16 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.04 1.73 6.21 -2.39 -0.01 1.72 16 23 H -0.02 -0.99 8.01 -2.39 -0.02 -1.01 16 24 H -0.01 -0.72 6.91 -2.39 -0.02 -0.74 16 25 H 0.25 16.60 7.22 -92.71 -0.67 15.93 16 26 H 0.04 1.76 5.47 -2.38 -0.01 1.75 16 27 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 28 H 0.07 2.02 8.03 -2.38 -0.02 2.00 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 33 H 0.35 5.43 9.03 -89.69 -0.81 4.62 16 34 H 0.35 5.81 8.90 -89.69 -0.80 5.01 16 35 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 36 H 0.06 1.68 6.05 -2.38 -0.01 1.67 16 Total: -1.00 -69.69 276.70 -0.20 -69.89 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.44 Total: 13.40 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.28 Total: -34.73 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -5.08 Total: -104.17 kcal Atomic # 14 Polarization: 53.57 SS G_CDS: 2.05 Total: 55.62 kcal Total: -69.69 -0.20 -69.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642857412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.345 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds