Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47454 * 2 1 4 4 C 1.53006 * 109.47019 * 120.00237 * 2 1 3 5 5 C 1.50700 * 109.47111 * 184.99763 * 4 2 1 6 6 H 1.08001 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46733 * 90.00334 * 9 7 5 11 11 H 1.48492 * 109.46996 * 210.00327 * 9 7 5 12 12 H 1.48502 * 109.47285 * 330.00690 * 9 7 5 13 13 N 1.46907 * 109.47140 * 239.99504 * 2 1 3 14 14 C 1.46956 * 111.00063 * 306.05154 * 13 2 1 15 15 C 1.53049 * 109.37889 * 183.19787 * 14 13 2 16 16 N 1.46961 * 109.36212 * 301.58202 * 15 14 13 17 17 C 1.46954 * 110.88027 * 59.32899 * 16 15 14 18 18 H 1.09002 * 109.49090 * 60.66256 * 17 16 15 19 19 C 1.52996 * 109.48995 * 180.71143 * 17 16 15 20 20 C 1.46998 * 111.02285 * 69.83654 * 13 2 1 21 21 H 1.08995 * 109.47071 * 60.00191 * 1 2 3 22 22 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47157 * 299.99782 * 1 2 3 24 24 H 1.09002 * 109.46758 * 304.99467 * 4 2 1 25 25 H 1.08998 * 109.47522 * 64.99551 * 4 2 1 26 26 H 0.96993 * 120.00321 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.49189 * 63.21630 * 14 13 2 28 28 H 1.09002 * 109.48707 * 303.17388 * 14 13 2 29 29 H 1.08997 * 109.49233 * 61.55148 * 15 14 13 30 30 H 1.09000 * 109.48715 * 181.60138 * 15 14 13 31 31 H 1.00896 * 111.00352 * 295.45411 * 16 15 14 32 32 H 1.09002 * 109.47126 * 59.99655 * 19 17 16 33 33 H 1.09000 * 109.47201 * 179.97438 * 19 17 16 34 34 H 1.08999 * 109.47194 * 299.99126 * 19 17 16 35 35 H 1.09005 * 109.48570 * 56.85644 * 20 13 2 36 36 H 1.08997 * 109.50642 * 296.80327 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1928 2.3583 8 7 3.5764 -1.8371 3.3000 9 14 6.0921 -1.0617 2.4366 10 1 6.4709 0.1611 3.1892 11 1 6.6440 -2.2568 3.1237 12 1 6.6413 -0.9849 1.0590 13 7 2.0197 -0.6926 -1.1994 14 6 1.4340 -2.0361 -1.3078 15 6 2.0282 -2.7526 -2.5226 16 7 1.7580 -1.9647 -3.7334 17 6 2.3438 -0.6213 -3.6256 18 1 3.4242 -0.7040 -3.5069 19 6 2.0290 0.1760 -4.8929 20 6 1.7495 0.0953 -2.4106 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7716 1.2057 26 1 4.0607 -2.2439 4.0353 27 1 0.3537 -1.9533 -1.4268 28 1 1.6579 -2.6043 -0.4049 29 1 3.1049 -2.8596 -2.3911 30 1 1.5742 -3.7386 -2.6213 31 1 0.7674 -1.9136 -3.9180 32 1 0.9486 0.2592 -5.0108 33 1 2.4632 1.1726 -4.8124 34 1 2.4506 -0.3355 -5.7581 35 1 2.2039 1.0812 -2.3119 36 1 0.6729 0.2026 -2.5424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642865961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = -3.505753 kcal Electronic energy + Delta-G solvation = -15039.288314 eV Core-core repulsion = 12750.823367 eV Total energy + Delta-G solvation = -2288.464946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23478 -35.61789 -32.60452 -31.98208 -30.09464 -27.39098 -26.95230 -24.43620 -22.84033 -22.23628 -20.25529 -18.74151 -16.16633 -15.52367 -14.91583 -14.83658 -14.70906 -14.26515 -13.96715 -13.06187 -12.95123 -12.25028 -12.09504 -11.86351 -11.81307 -11.64386 -11.53909 -10.99687 -10.78470 -10.66100 -10.56974 -10.50367 -10.39627 -9.92046 -9.22570 -8.99351 -8.26616 -8.15952 -7.46901 -5.89076 -3.86966 3.38982 3.45187 3.50616 4.36351 4.52258 4.56844 5.18360 5.37437 5.42447 5.48375 5.54739 5.61707 5.70643 5.72930 5.80338 5.85714 5.97117 6.00868 6.08726 6.17656 6.26090 6.40766 6.50778 6.53088 6.67041 6.96701 7.22248 7.48746 7.60728 7.66440 7.89352 8.00163 8.11928 8.57692 9.18829 9.74832 11.22941 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.009027 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.773465 B = 3101.147955 C = 3390.590883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.506 5.506 14 C 0.018 3.982 15 C 0.059 3.941 16 N -0.684 5.684 17 C 0.084 3.916 18 H 0.088 0.912 19 C -0.142 4.142 20 C 0.021 3.979 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.257 0.743 27 H 0.023 0.977 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.330 0.670 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 1.840 -12.144 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.006 4.006 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.112 4.112 15 C -0.070 4.070 16 N -0.312 5.312 17 C -0.026 4.026 18 H 0.107 0.893 19 C -0.200 4.200 20 C -0.109 4.109 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.226 1.420 -12.299 13.082 hybrid contribution -0.546 0.583 0.856 1.170 sum -4.771 2.003 -11.443 12.558 Atomic orbital electron populations 1.22509 0.99893 1.01226 1.00567 1.21938 0.89961 0.98320 0.91970 0.91361 1.19188 0.96420 0.95292 0.89723 1.21158 0.91759 1.32984 1.06939 0.92219 1.25006 0.98061 0.95850 0.95975 1.69958 1.35259 1.36952 1.12358 0.86629 0.86342 0.77213 0.78016 1.21021 1.21534 1.19878 1.62243 1.58099 1.01561 1.01049 1.22821 0.95375 0.92102 1.00857 1.22095 1.02406 0.95640 0.86890 1.60893 1.18334 1.14703 1.37287 1.21627 1.00452 0.87693 0.92855 0.89343 1.21770 1.01135 0.99606 0.97477 1.22864 0.97639 0.98257 0.92168 0.94354 0.92909 0.92513 0.96414 0.96332 0.93310 0.95943 0.88995 0.89919 0.90961 0.85349 0.93223 0.92191 0.91943 0.90996 0.95928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.44 37.16 0.31 -2.90 16 2 C 0.09 1.78 2.26 -67.71 -0.15 1.63 16 3 H 0.07 1.45 8.03 -51.94 -0.42 1.03 16 4 C 0.03 0.79 4.37 -27.88 -0.12 0.67 16 5 C -0.49 -13.84 8.84 -34.44 -0.30 -14.14 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -9.70 4.38 -226.44 -0.99 -10.69 16 14 C 0.02 0.32 4.74 -3.77 -0.02 0.30 16 15 C 0.06 0.91 6.72 -3.77 -0.03 0.89 16 16 N -0.68 -9.52 6.56 -106.58 -0.70 -10.22 16 17 C 0.08 1.19 3.20 -67.65 -0.22 0.97 16 18 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 19 C -0.14 -1.58 9.45 37.16 0.35 -1.23 16 20 C 0.02 0.33 4.61 -3.74 -0.02 0.31 16 21 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 22 H 0.05 0.92 6.40 -51.93 -0.33 0.59 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.50 6.28 -51.93 -0.33 0.18 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.38 6.41 -51.93 -0.33 0.04 16 28 H 0.09 1.88 6.24 -51.93 -0.32 1.56 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.33 4.17 8.80 -39.29 -0.35 3.83 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.02 0.35 6.76 -51.93 -0.35 -0.01 16 LS Contribution 278.10 15.07 4.19 4.19 Total: -1.00 -29.65 278.10 -8.20 -37.85 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.12 Total: 0.48 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.29 Total: -12.15 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.95 Total: -47.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.65 -8.20 -37.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642865961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.342 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds