Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.47454 * 2 1 4 4 C 1.53006 * 109.47019 * 120.00237 * 2 1 3 5 5 C 1.50700 * 109.47111 * 184.99763 * 4 2 1 6 6 H 1.08001 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46733 * 90.00334 * 9 7 5 11 11 H 1.48492 * 109.46996 * 210.00327 * 9 7 5 12 12 H 1.48502 * 109.47285 * 330.00690 * 9 7 5 13 13 N 1.46907 * 109.47140 * 239.99504 * 2 1 3 14 14 C 1.46956 * 111.00063 * 306.05154 * 13 2 1 15 15 C 1.53049 * 109.37889 * 183.19787 * 14 13 2 16 16 N 1.46961 * 109.36212 * 301.58202 * 15 14 13 17 17 C 1.46954 * 110.88027 * 59.32899 * 16 15 14 18 18 H 1.09002 * 109.49090 * 60.66256 * 17 16 15 19 19 C 1.52996 * 109.48995 * 180.71143 * 17 16 15 20 20 C 1.46998 * 111.02285 * 69.83654 * 13 2 1 21 21 H 1.08995 * 109.47071 * 60.00191 * 1 2 3 22 22 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47157 * 299.99782 * 1 2 3 24 24 H 1.09002 * 109.46758 * 304.99467 * 4 2 1 25 25 H 1.08998 * 109.47522 * 64.99551 * 4 2 1 26 26 H 0.96993 * 120.00321 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.49189 * 63.21630 * 14 13 2 28 28 H 1.09002 * 109.48707 * 303.17388 * 14 13 2 29 29 H 1.08997 * 109.49233 * 61.55148 * 15 14 13 30 30 H 1.09000 * 109.48715 * 181.60138 * 15 14 13 31 31 H 1.00896 * 111.00352 * 295.45411 * 16 15 14 32 32 H 1.09002 * 109.47126 * 59.99655 * 19 17 16 33 33 H 1.09000 * 109.47201 * 179.97438 * 19 17 16 34 34 H 1.08999 * 109.47194 * 299.99126 * 19 17 16 35 35 H 1.09005 * 109.48570 * 56.85644 * 20 13 2 36 36 H 1.08997 * 109.50642 * 296.80327 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1928 2.3583 8 7 3.5764 -1.8371 3.3000 9 14 6.0921 -1.0617 2.4366 10 1 6.4709 0.1611 3.1892 11 1 6.6440 -2.2568 3.1237 12 1 6.6413 -0.9849 1.0590 13 7 2.0197 -0.6926 -1.1994 14 6 1.4340 -2.0361 -1.3078 15 6 2.0282 -2.7526 -2.5226 16 7 1.7580 -1.9647 -3.7334 17 6 2.3438 -0.6213 -3.6256 18 1 3.4242 -0.7040 -3.5069 19 6 2.0290 0.1760 -4.8929 20 6 1.7495 0.0953 -2.4106 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7716 1.2057 26 1 4.0607 -2.2439 4.0353 27 1 0.3537 -1.9533 -1.4268 28 1 1.6579 -2.6043 -0.4049 29 1 3.1049 -2.8596 -2.3911 30 1 1.5742 -3.7386 -2.6213 31 1 0.7674 -1.9136 -3.9180 32 1 0.9486 0.2592 -5.0108 33 1 2.4632 1.1726 -4.8124 34 1 2.4506 -0.3355 -5.7581 35 1 2.2039 1.0812 -2.3119 36 1 0.6729 0.2026 -2.5424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642865961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = -24.823562 kcal Electronic energy + Delta-G solvation = -15040.212723 eV Core-core repulsion = 12750.823367 eV Total energy + Delta-G solvation = -2289.389356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60417 -37.09278 -34.70027 -33.17186 -31.72824 -29.23221 -28.13654 -25.93168 -24.69301 -23.58906 -21.52570 -20.33144 -18.38168 -16.99561 -16.58284 -16.15915 -16.03213 -15.80613 -15.34059 -14.65450 -14.36882 -13.86047 -13.68377 -13.43366 -13.18653 -13.02490 -12.78295 -12.78016 -12.44848 -12.28390 -12.12557 -11.91251 -11.78735 -11.67458 -11.12545 -11.07210 -10.50263 -9.40527 -8.90281 -8.12463 -6.17553 1.39803 1.40911 1.52524 2.45429 3.00907 3.22942 3.34198 3.99602 4.12302 4.17984 4.22127 4.24213 4.39756 4.47767 4.51025 4.62311 4.70514 4.77803 4.86886 4.95044 5.03491 5.11877 5.14906 5.18507 5.31943 5.34616 5.45340 5.66107 5.86716 6.01775 6.27229 6.41509 6.47757 6.54872 6.95819 7.48402 8.99600 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.009027 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.773465 B = 3101.147955 C = 3390.590883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.061 0.939 4 C 0.037 3.963 5 C -0.500 4.500 6 H 0.055 0.945 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.531 5.531 14 C 0.024 3.976 15 C 0.068 3.932 16 N -0.676 5.676 17 C 0.086 3.914 18 H 0.066 0.934 19 C -0.132 4.132 20 C 0.024 3.976 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.057 0.943 24 H -0.010 1.010 25 H -0.004 1.004 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.343 0.657 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 2.420 -14.076 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 H 0.080 0.920 4 C 0.000 4.000 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.255 5.255 14 C -0.106 4.106 15 C -0.062 4.062 16 N -0.305 5.305 17 C -0.024 4.024 18 H 0.085 0.915 19 C -0.190 4.190 20 C -0.105 4.105 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.009 0.991 25 H 0.015 0.985 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.417 2.011 -14.253 15.057 hybrid contribution -0.508 0.399 1.455 1.592 sum -4.925 2.410 -12.798 13.923 Atomic orbital electron populations 1.22357 0.97257 1.01539 1.01890 1.21629 0.92027 0.97076 0.90753 0.92044 1.19035 0.95257 0.94317 0.91371 1.21453 0.93237 1.32527 1.06653 0.92700 1.25852 1.02947 0.95568 0.95684 1.70083 1.37143 1.37927 1.13029 0.85569 0.80524 0.77465 0.78201 1.20069 1.21099 1.19302 1.62119 1.59096 1.02463 1.01793 1.22750 0.96307 0.91256 1.00272 1.21990 1.01009 0.96719 0.86508 1.60870 1.19318 1.14459 1.35875 1.21624 0.99098 0.88004 0.93675 0.91544 1.21697 1.02158 0.99488 0.95688 1.22923 0.98620 0.97875 0.91084 0.91730 0.93055 0.92441 0.99127 0.98532 0.93206 0.94475 0.92706 0.92155 0.88774 0.83896 0.91864 0.91294 0.91320 0.91091 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 8.44 71.98 0.61 -5.21 16 2 C 0.09 3.87 2.26 44.92 0.10 3.97 16 3 H 0.06 2.60 8.03 -2.39 -0.02 2.58 16 4 C 0.04 1.98 4.37 29.85 0.13 2.11 16 5 C -0.50 -28.91 8.84 25.60 0.23 -28.68 16 6 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 9 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 13 N -0.53 -20.13 4.38 -870.33 -3.81 -23.94 16 14 C 0.02 0.83 4.74 86.31 0.41 1.24 16 15 C 0.07 2.01 6.72 86.31 0.58 2.59 16 16 N -0.68 -17.20 6.56 -491.12 -3.22 -20.42 16 17 C 0.09 2.26 3.20 44.92 0.14 2.40 16 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.13 -2.51 9.45 71.98 0.68 -1.83 16 20 C 0.02 0.72 4.61 86.31 0.40 1.12 16 21 H 0.06 1.85 6.75 -2.39 -0.02 1.83 16 22 H 0.05 1.74 6.40 -2.39 -0.02 1.73 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.00 -0.20 6.28 -2.39 -0.01 -0.22 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.04 1.18 6.41 -2.39 -0.02 1.17 16 28 H 0.05 2.32 6.24 -2.39 -0.01 2.31 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.34 7.49 8.80 -89.70 -0.79 6.70 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 36 H 0.04 1.01 6.76 -2.39 -0.02 0.99 16 Total: -1.00 -64.34 278.10 -0.73 -65.07 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.25 Total: 11.22 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 3.74 Total: -22.07 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -6.75 Total: -102.31 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -64.34 -0.73 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642865961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.249 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds