Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.53003 * 109.47219 * 120.00397 * 2 1 3 5 5 C 1.50696 * 109.46961 * 296.77983 * 4 2 1 6 6 H 1.08000 * 120.00333 * 4.48771 * 5 4 2 7 7 C 1.37884 * 119.99928 * 184.48505 * 5 4 2 8 8 N 1.31511 * 119.99895 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99856 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47090 * 89.99921 * 9 7 5 11 11 H 1.48499 * 109.46813 * 209.99767 * 9 7 5 12 12 H 1.48501 * 109.47269 * 330.00072 * 9 7 5 13 13 N 1.46906 * 109.46738 * 239.99899 * 2 1 3 14 14 C 1.46952 * 111.00173 * 185.93788 * 13 2 1 15 15 C 1.53049 * 109.36844 * 176.81389 * 14 13 2 16 16 N 1.46958 * 109.36160 * 58.40089 * 15 14 13 17 17 C 1.46962 * 110.88093 * 300.68137 * 16 15 14 18 18 H 1.09002 * 109.48562 * 299.35241 * 17 16 15 19 19 C 1.52999 * 109.48992 * 179.29238 * 17 16 15 20 20 C 1.46958 * 110.99652 * 62.13998 * 13 2 1 21 21 H 1.09001 * 109.46818 * 299.99653 * 1 2 3 22 22 H 1.08994 * 109.47157 * 59.99624 * 1 2 3 23 23 H 1.09006 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46901 * 56.78124 * 4 2 1 25 25 H 1.08996 * 109.47012 * 176.78015 * 4 2 1 26 26 H 0.97001 * 120.00210 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.48527 * 296.78396 * 14 13 2 28 28 H 1.08996 * 109.48719 * 56.84327 * 14 13 2 29 29 H 1.08996 * 109.48786 * 178.36829 * 15 14 13 30 30 H 1.09004 * 109.48376 * 298.41497 * 15 14 13 31 31 H 1.00904 * 110.99970 * 176.81546 * 16 15 14 32 32 H 1.09003 * 109.46770 * 300.10700 * 19 17 16 33 33 H 1.08997 * 109.47131 * 60.10677 * 19 17 16 34 34 H 1.09001 * 109.47053 * 180.10781 * 19 17 16 35 35 H 1.08995 * 109.49529 * 63.21989 * 20 13 2 36 36 H 1.09005 * 109.50356 * 303.16224 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6040 0.0336 2.4784 6 1 0.9610 0.8960 2.3827 7 6 2.0258 -0.3769 3.7253 8 7 1.6456 0.2822 4.7979 9 14 3.1372 -1.8691 3.8909 10 1 4.5569 -1.4385 3.8261 11 1 2.8808 -2.5350 5.1933 12 1 2.8573 -2.8200 2.7851 13 7 2.0196 -0.6926 -1.1995 14 6 3.4817 -0.8364 -1.1647 15 6 3.9429 -1.6304 -2.3892 16 7 3.5139 -0.9350 -3.6107 17 6 2.0517 -0.7912 -3.6455 18 1 1.5889 -1.7780 -3.6344 19 6 1.6419 -0.0490 -4.9191 20 6 1.5906 0.0028 -2.4210 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.6304 -1.7310 1.2784 25 1 3.1285 -0.7716 1.2208 26 1 1.9420 -0.0067 5.6752 27 1 3.9445 0.1505 -1.1758 28 1 3.7736 -1.3651 -0.2574 29 1 5.0296 -1.7133 -2.3806 30 1 3.5018 -2.6268 -2.3636 31 1 3.8501 -1.4107 -4.4346 32 1 2.1058 0.9373 -4.9300 33 1 1.9705 -0.6148 -5.7909 34 1 0.5576 0.0591 -4.9437 35 1 2.0319 0.9991 -2.4464 36 1 0.5038 0.0861 -2.4297 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642865963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -0.741038 kcal Electronic energy + Delta-G solvation = -14851.638140 eV Core-core repulsion = 12563.293081 eV Total energy + Delta-G solvation = -2288.345059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10625 -35.73711 -32.74863 -32.21878 -30.66945 -28.03429 -26.52214 -25.16865 -22.44345 -21.96692 -19.59461 -18.99009 -17.13802 -16.22680 -14.96971 -14.80760 -14.54327 -14.07726 -13.84466 -13.75315 -13.03628 -12.60061 -12.32978 -12.08895 -11.92173 -11.57491 -11.32932 -11.11242 -10.91734 -10.82016 -10.72779 -10.27292 -9.94763 -9.78585 -9.49023 -9.08642 -8.51018 -8.43240 -7.76498 -6.02858 -4.00162 3.31514 3.39418 3.44525 4.20529 4.35004 4.46889 4.97257 5.14529 5.28738 5.31392 5.45943 5.56124 5.65370 5.66263 5.77314 5.84922 5.94469 6.02566 6.09380 6.22909 6.28652 6.30877 6.34838 6.66732 6.79251 7.04474 7.06184 7.12707 7.33070 7.41391 7.63936 7.70699 7.90011 8.55466 9.01680 9.59759 11.10355 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046328 B = 0.008059 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.240828 B = 3473.378089 C = 3931.035834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.033 0.967 4 C -0.005 4.005 5 C -0.516 4.516 6 H 0.074 0.926 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.540 5.540 14 C 0.052 3.948 15 C 0.061 3.939 16 N -0.688 5.688 17 C 0.084 3.916 18 H 0.044 0.956 19 C -0.143 4.143 20 C 0.060 3.940 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.053 0.947 24 H 0.022 0.978 25 H 0.014 0.986 26 H 0.262 0.738 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.336 0.664 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -3.170 -16.489 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.051 0.949 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.092 0.908 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.265 5.265 14 C -0.076 4.076 15 C -0.069 4.069 16 N -0.320 5.320 17 C -0.026 4.026 18 H 0.062 0.938 19 C -0.201 4.201 20 C -0.069 4.069 21 H 0.090 0.910 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.893 -3.007 -16.018 16.407 hybrid contribution 0.728 -0.853 0.088 1.125 sum 2.621 -3.859 -15.930 16.599 Atomic orbital electron populations 1.21759 0.94896 1.01587 1.00568 1.21604 0.95318 0.95350 0.89027 0.94868 1.19679 0.95590 0.96620 0.92364 1.21108 1.30978 1.14070 0.89300 0.90815 1.24991 0.95995 0.96542 0.95847 1.69908 1.45826 1.40387 0.98177 0.86815 0.81263 0.83902 0.77571 1.20382 1.21427 1.18904 1.62259 1.10586 1.51369 1.02324 1.22201 0.88463 0.99348 0.97609 1.22011 0.99421 0.95595 0.89866 1.60577 1.11435 1.55380 1.04616 1.21544 0.87737 0.98207 0.95096 0.93837 1.21778 1.01141 1.01015 0.96196 1.22186 1.00167 0.95368 0.89186 0.91022 0.94749 0.92801 0.95964 0.96836 0.92775 0.94474 0.89499 0.90737 0.94545 0.84684 0.91931 0.92886 0.92075 0.94682 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.81 37.16 0.33 -2.19 16 2 C 0.09 1.96 2.12 -67.71 -0.14 1.81 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.00 -0.12 3.22 -27.88 -0.09 -0.21 16 5 C -0.52 -14.64 9.03 -34.44 -0.31 -14.95 16 6 H 0.07 2.23 7.02 -52.49 -0.37 1.86 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 9 Si 0.88 21.90 27.38 -169.99 -4.65 17.25 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.40 6.67 56.52 0.38 -6.03 16 13 N -0.54 -9.79 4.58 -226.49 -1.04 -10.83 16 14 C 0.05 0.89 5.18 -3.77 -0.02 0.87 16 15 C 0.06 0.84 6.72 -3.77 -0.03 0.81 16 16 N -0.69 -8.78 6.55 -106.58 -0.70 -9.47 16 17 C 0.08 1.09 3.19 -67.65 -0.22 0.87 16 18 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.14 -1.46 9.46 37.16 0.35 -1.11 16 20 C 0.06 0.92 4.64 -3.77 -0.02 0.90 16 21 H 0.07 1.50 6.74 -51.93 -0.35 1.15 16 22 H 0.03 0.57 6.38 -51.93 -0.33 0.23 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 25 H 0.01 0.33 5.25 -51.93 -0.27 0.05 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.59 5.96 -51.93 -0.31 1.28 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.34 3.49 8.83 -39.29 -0.35 3.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.15 6.20 -51.93 -0.32 0.83 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -30.31 274.82 -7.79 -38.10 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.08 Total: -0.71 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.24 Total: -11.33 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.96 Total: -47.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.65 Total: 17.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.31 -7.79 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642865963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds