Wall clock time and date at job start Mon Mar 30 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.53003 * 109.47219 * 120.00397 * 2 1 3 5 5 C 1.50696 * 109.46961 * 296.77983 * 4 2 1 6 6 H 1.08000 * 120.00333 * 4.48771 * 5 4 2 7 7 C 1.37884 * 119.99928 * 184.48505 * 5 4 2 8 8 N 1.31511 * 119.99895 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99856 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47090 * 89.99921 * 9 7 5 11 11 H 1.48499 * 109.46813 * 209.99767 * 9 7 5 12 12 H 1.48501 * 109.47269 * 330.00072 * 9 7 5 13 13 N 1.46906 * 109.46738 * 239.99899 * 2 1 3 14 14 C 1.46952 * 111.00173 * 185.93788 * 13 2 1 15 15 C 1.53049 * 109.36844 * 176.81389 * 14 13 2 16 16 N 1.46958 * 109.36160 * 58.40089 * 15 14 13 17 17 C 1.46962 * 110.88093 * 300.68137 * 16 15 14 18 18 H 1.09002 * 109.48562 * 299.35241 * 17 16 15 19 19 C 1.52999 * 109.48992 * 179.29238 * 17 16 15 20 20 C 1.46958 * 110.99652 * 62.13998 * 13 2 1 21 21 H 1.09001 * 109.46818 * 299.99653 * 1 2 3 22 22 H 1.08994 * 109.47157 * 59.99624 * 1 2 3 23 23 H 1.09006 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46901 * 56.78124 * 4 2 1 25 25 H 1.08996 * 109.47012 * 176.78015 * 4 2 1 26 26 H 0.97001 * 120.00210 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.48527 * 296.78396 * 14 13 2 28 28 H 1.08996 * 109.48719 * 56.84327 * 14 13 2 29 29 H 1.08996 * 109.48786 * 178.36829 * 15 14 13 30 30 H 1.09004 * 109.48376 * 298.41497 * 15 14 13 31 31 H 1.00904 * 110.99970 * 176.81546 * 16 15 14 32 32 H 1.09003 * 109.46770 * 300.10700 * 19 17 16 33 33 H 1.08997 * 109.47131 * 60.10677 * 19 17 16 34 34 H 1.09001 * 109.47053 * 180.10781 * 19 17 16 35 35 H 1.08995 * 109.49529 * 63.21989 * 20 13 2 36 36 H 1.09005 * 109.50356 * 303.16224 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6040 0.0336 2.4784 6 1 0.9610 0.8960 2.3827 7 6 2.0258 -0.3769 3.7253 8 7 1.6456 0.2822 4.7979 9 14 3.1372 -1.8691 3.8909 10 1 4.5569 -1.4385 3.8261 11 1 2.8808 -2.5350 5.1933 12 1 2.8573 -2.8200 2.7851 13 7 2.0196 -0.6926 -1.1995 14 6 3.4817 -0.8364 -1.1647 15 6 3.9429 -1.6304 -2.3892 16 7 3.5139 -0.9350 -3.6107 17 6 2.0517 -0.7912 -3.6455 18 1 1.5889 -1.7780 -3.6344 19 6 1.6419 -0.0490 -4.9191 20 6 1.5906 0.0028 -2.4210 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.6304 -1.7310 1.2784 25 1 3.1285 -0.7716 1.2208 26 1 1.9420 -0.0067 5.6752 27 1 3.9445 0.1505 -1.1758 28 1 3.7736 -1.3651 -0.2574 29 1 5.0296 -1.7133 -2.3806 30 1 3.5018 -2.6268 -2.3636 31 1 3.8501 -1.4107 -4.4346 32 1 2.1058 0.9373 -4.9300 33 1 1.9705 -0.6148 -5.7909 34 1 0.5576 0.0591 -4.9437 35 1 2.0319 0.9991 -2.4464 36 1 0.5038 0.0861 -2.4297 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642865963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:08 Heat of formation + Delta-G solvation = -23.447127 kcal Electronic energy + Delta-G solvation = -14852.622750 eV Core-core repulsion = 12563.293081 eV Total energy + Delta-G solvation = -2289.329669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40419 -37.17460 -34.78455 -33.33475 -32.36414 -29.65749 -27.82345 -26.60086 -24.26265 -23.15561 -20.85674 -20.60790 -19.16761 -17.53607 -16.56346 -16.03527 -15.95464 -15.66132 -15.45514 -15.03920 -14.60315 -14.36701 -13.70911 -13.44241 -13.12373 -13.05072 -12.86772 -12.67798 -12.40492 -12.18836 -11.99255 -11.90579 -11.71773 -11.58003 -11.25240 -11.06238 -10.73763 -9.47970 -9.20843 -8.28841 -6.31709 1.33710 1.36090 1.48522 2.35638 2.95382 3.06265 3.22747 3.91461 4.01332 4.12701 4.23066 4.35053 4.38857 4.45858 4.54281 4.62653 4.72023 4.81426 4.84513 4.96305 5.01625 5.08080 5.11518 5.13855 5.20466 5.33850 5.38755 5.50387 5.65399 5.97939 6.12002 6.25972 6.33564 6.55522 6.75092 7.31962 8.87530 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046328 B = 0.008059 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.240828 B = 3473.378089 C = 3931.035834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.099 3.901 3 H 0.014 0.986 4 C 0.003 3.997 5 C -0.523 4.523 6 H 0.038 0.962 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.250 1.250 13 N -0.542 5.542 14 C 0.048 3.952 15 C 0.069 3.931 16 N -0.691 5.691 17 C 0.088 3.912 18 H 0.042 0.958 19 C -0.136 4.136 20 C 0.057 3.943 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.354 0.646 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -4.708 -18.748 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.008 4.008 3 H 0.032 0.968 4 C -0.034 4.034 5 C -0.561 4.561 6 H 0.056 0.944 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.174 1.174 13 N -0.267 5.267 14 C -0.081 4.081 15 C -0.061 4.061 16 N -0.325 5.325 17 C -0.022 4.022 18 H 0.060 0.940 19 C -0.194 4.194 20 C -0.071 4.071 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.174 0.826 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.742 -4.546 -18.317 19.070 hybrid contribution 0.423 -0.286 0.770 0.924 sum 3.164 -4.832 -17.547 18.473 Atomic orbital electron populations 1.21650 0.93889 1.01722 1.00759 1.21378 0.96153 0.94025 0.89286 0.96815 1.19545 0.95709 0.95941 0.92243 1.21387 1.30141 1.13326 0.91275 0.94370 1.25922 0.97738 0.99917 0.95398 1.70053 1.47599 1.42524 0.98886 0.85727 0.79339 0.80002 0.78034 1.19198 1.20888 1.17374 1.62257 1.11306 1.51013 1.02111 1.22256 0.87781 0.99071 0.98970 1.21915 1.00598 0.94791 0.88791 1.60531 1.11395 1.55633 1.04961 1.21531 0.87837 0.97969 0.94911 0.93967 1.21728 1.01788 1.00557 0.95319 1.22318 1.00616 0.95126 0.89038 0.93619 0.91779 0.92581 0.96354 0.96435 0.92531 0.95749 0.90954 0.88700 0.94432 0.82647 0.92454 0.90955 0.91093 0.95755 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.81 71.98 0.63 -4.09 16 2 C 0.10 4.15 2.12 44.92 0.10 4.25 16 3 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.00 0.16 3.22 29.85 0.10 0.25 16 5 C -0.52 -30.50 9.03 25.60 0.23 -30.27 16 6 H 0.04 2.43 7.02 -2.91 -0.02 2.41 16 7 C 0.01 0.42 5.47 84.66 0.46 0.88 16 8 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 9 Si 0.95 45.12 27.38 68.60 1.88 47.00 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.25 -11.26 6.67 99.48 0.66 -10.60 16 13 N -0.54 -19.02 4.58 -870.47 -3.98 -23.01 16 14 C 0.05 1.57 5.18 86.31 0.45 2.02 16 15 C 0.07 1.72 6.72 86.31 0.58 2.30 16 16 N -0.69 -15.54 6.55 -491.12 -3.21 -18.75 16 17 C 0.09 2.01 3.19 44.92 0.14 2.15 16 18 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 19 C -0.14 -2.32 9.46 71.98 0.68 -1.64 16 20 C 0.06 1.66 4.64 86.31 0.40 2.06 16 21 H 0.04 1.97 6.74 -2.39 -0.02 1.96 16 22 H 0.06 2.05 6.38 -2.39 -0.02 2.03 16 23 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 25 H 0.02 0.84 5.25 -2.39 -0.01 0.82 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 2.57 5.96 -2.39 -0.01 2.56 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 31 H 0.35 6.02 8.83 -89.69 -0.79 5.23 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 2.32 6.20 -2.38 -0.01 2.31 16 Total: -1.00 -65.89 274.82 -1.04 -66.93 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.21 Total: 9.76 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.77 Total: -22.08 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.90 Total: -101.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -65.89 -1.04 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642865963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.484 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds