Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 C 1.50699 * 109.46955 * 240.00204 * 2 1 3 5 5 H 1.08000 * 119.99499 * 245.19945 * 4 2 1 6 6 C 1.37872 * 120.00129 * 65.20291 * 4 2 1 7 7 N 1.31522 * 119.99525 * 194.91143 * 6 4 2 8 8 Si 1.86800 * 120.00221 * 14.91298 * 6 4 2 9 9 H 1.48498 * 109.46878 * 94.89169 * 8 6 4 10 10 H 1.48497 * 109.47023 * 214.88703 * 8 6 4 11 11 H 1.48495 * 109.47143 * 334.89121 * 8 6 4 12 12 N 1.46899 * 109.47041 * 119.99725 * 2 1 3 13 13 C 1.46906 * 111.00148 * 259.72817 * 12 2 1 14 14 C 1.53001 * 110.27243 * 62.34208 * 13 12 2 15 15 C 1.54591 * 110.30490 * 300.14966 * 13 12 2 16 16 C 1.54940 * 102.92146 * 219.12434 * 15 13 12 17 17 N 1.48537 * 103.22340 * 37.41748 * 16 15 13 18 18 C 1.46902 * 110.99898 * 200.28295 * 17 16 15 19 19 C 1.47898 * 105.81820 * 320.78960 * 17 16 15 20 20 H 1.08996 * 109.47105 * 305.45961 * 1 2 3 21 21 H 1.08999 * 109.47042 * 65.45789 * 1 2 3 22 22 H 1.08997 * 109.46939 * 185.45991 * 1 2 3 23 23 H 0.96998 * 119.99878 * 179.97438 * 7 6 4 24 24 H 1.00897 * 110.99990 * 135.77521 * 12 2 1 25 25 H 1.08998 * 109.47149 * 55.34563 * 14 13 12 26 26 H 1.09004 * 109.46810 * 175.34291 * 14 13 12 27 27 H 1.08995 * 109.47277 * 295.34594 * 14 13 12 28 28 H 1.08998 * 110.73082 * 337.48330 * 15 13 12 29 29 H 1.09004 * 110.72445 * 100.77153 * 15 13 12 30 30 H 1.08998 * 110.66671 * 278.98258 * 16 15 13 31 31 H 1.09000 * 110.81043 * 155.91375 * 16 15 13 32 32 H 1.08995 * 109.47203 * 177.39752 * 18 17 16 33 33 H 1.09007 * 109.46863 * 297.39307 * 18 17 16 34 34 H 1.08996 * 109.47458 * 57.38874 * 18 17 16 35 35 H 1.09000 * 109.92135 * 265.97602 * 19 17 16 36 36 H 1.09008 * 110.08026 * 144.77445 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5822 -1.6348 -1.1336 6 6 1.7900 -0.1801 -2.4799 7 7 1.9589 -0.9215 -3.5529 8 14 1.2218 1.5914 -2.6485 9 1 2.3963 2.4668 -2.8920 10 1 0.2773 1.7018 -3.7891 11 1 0.5402 2.0138 -1.3986 12 7 2.0197 -0.6924 1.1995 13 6 2.4257 0.2689 2.2335 14 6 1.2258 1.1074 2.6783 15 6 3.5544 1.1825 1.7030 16 6 4.4869 1.3300 2.9315 17 7 4.4416 -0.0169 3.5562 18 6 4.8594 0.0411 4.9633 19 6 3.0384 -0.4690 3.4383 20 1 -0.3633 0.5962 0.8370 21 1 -0.3633 0.4269 -0.9348 22 1 -0.3633 -1.0230 0.0978 23 1 1.7880 -0.5486 -4.4319 24 1 2.7766 -1.3194 0.9714 25 1 0.4232 0.4473 3.0073 26 1 1.5220 1.7574 3.5017 27 1 0.8773 1.7148 1.8431 28 1 4.0795 0.7060 0.8752 29 1 3.1567 2.1518 1.4021 30 1 4.1031 2.0853 3.6174 31 1 5.5021 1.5755 2.6198 32 1 4.7729 -0.9497 5.4092 33 1 5.8950 0.3764 5.0213 34 1 4.2206 0.7397 5.5036 35 1 2.4897 -0.2175 4.3459 36 1 3.0049 -1.5456 3.2705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = 9.621890 kcal Electronic energy + Delta-G solvation = -15133.767358 eV Core-core repulsion = 12845.871669 eV Total energy + Delta-G solvation = -2287.895689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37445 -35.76641 -32.88174 -31.06929 -29.46275 -28.13868 -26.73001 -24.87192 -23.91364 -21.18980 -20.14009 -18.55386 -16.94953 -15.67804 -15.41406 -14.81911 -14.25253 -13.95908 -13.51243 -13.11749 -12.71773 -12.42072 -12.21342 -12.10235 -11.74782 -11.55083 -11.46666 -11.30725 -11.06962 -10.83118 -10.49187 -10.39658 -10.19899 -10.05952 -9.45302 -9.08897 -8.41695 -8.29820 -7.40772 -6.10954 -4.05684 3.26803 3.36738 3.39373 4.17960 4.41440 4.81966 4.93269 5.15426 5.25232 5.35619 5.42327 5.45900 5.52186 5.65502 5.82507 5.84808 5.98768 6.07490 6.17326 6.23013 6.36625 6.49542 6.56911 6.62318 6.79349 6.92628 7.00281 7.04143 7.15509 7.52324 7.67035 8.03863 8.40986 8.66208 8.98913 9.55452 11.02282 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043780 B = 0.008919 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.405956 B = 3138.609037 C = 3198.737619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.186 3.814 3 H 0.009 0.991 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.865 3.135 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.254 1.254 12 N -0.669 5.669 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.150 4.150 16 C 0.036 3.964 17 N -0.522 5.522 18 C 0.018 3.982 19 C 0.045 3.955 20 H 0.023 0.977 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.263 0.737 24 H 0.344 0.656 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 5.239 13.898 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 H 0.026 0.974 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.692 3.308 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.178 1.178 12 N -0.300 5.300 13 C 0.014 3.986 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.092 4.092 17 N -0.246 5.246 18 C -0.131 4.131 19 C -0.083 4.083 20 H 0.042 0.958 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.163 0.837 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.846 4.750 13.704 14.621 hybrid contribution 0.023 1.856 -0.243 1.872 sum 1.868 6.606 13.460 15.110 Atomic orbital electron populations 1.22158 0.98516 1.00229 0.98119 1.19431 0.91911 0.93240 0.87740 0.97358 1.21244 1.36491 1.09831 0.89232 0.90665 1.24893 0.94570 0.97344 0.95770 1.69988 1.49087 1.35538 0.98296 0.87148 0.78828 0.86482 0.78342 1.20864 1.21326 1.17838 1.60735 1.39707 1.18497 1.11098 1.21715 0.92726 0.91672 0.92534 1.21923 0.97753 0.98973 1.00328 1.23306 0.97112 1.00855 0.97686 1.23202 1.00277 0.89691 0.95986 1.64741 1.21921 1.23063 1.14922 1.22487 1.00450 1.01165 0.89016 1.22987 0.87166 1.01230 0.96891 0.95755 0.94197 0.93187 0.92722 0.83668 0.91932 0.93756 0.92099 0.89772 0.91477 0.94306 0.90532 0.91514 0.91638 0.95807 0.93834 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.51 37.16 0.32 -2.65 16 2 C 0.19 4.32 1.32 -68.86 -0.09 4.23 16 3 H 0.01 0.21 4.62 -51.93 -0.24 -0.03 16 4 C -0.53 -14.69 9.00 -34.44 -0.31 -15.00 16 5 H 0.08 2.26 7.70 -52.49 -0.40 1.86 16 6 C 0.08 2.20 5.34 -17.82 -0.10 2.11 16 7 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.86 21.26 25.77 -169.99 -4.38 16.88 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.25 -5.90 5.51 56.52 0.31 -5.59 16 12 N -0.67 -13.61 5.90 -92.89 -0.55 -14.16 16 13 C 0.11 1.81 0.84 -130.24 -0.11 1.70 16 14 C -0.13 -2.08 7.03 37.16 0.26 -1.82 16 15 C -0.15 -2.52 4.82 -24.87 -0.12 -2.64 16 16 C 0.04 0.52 6.56 -1.89 -0.01 0.50 16 17 N -0.52 -7.53 5.55 -238.71 -1.33 -8.86 16 18 C 0.02 0.20 9.40 60.07 0.56 0.77 16 19 C 0.05 0.68 6.09 -2.76 -0.02 0.66 16 20 H 0.02 0.48 6.00 -51.93 -0.31 0.16 16 21 H 0.04 0.92 5.05 -51.93 -0.26 0.66 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.34 7.30 7.85 -39.29 -0.31 6.99 16 25 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.04 6.18 -51.93 -0.32 0.72 16 28 H 0.08 1.62 7.98 -51.93 -0.41 1.20 16 29 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 30 H 0.04 0.50 7.96 -51.93 -0.41 0.09 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.25 8.00 -51.93 -0.42 -0.16 16 35 H 0.04 0.60 7.27 -51.93 -0.38 0.22 16 36 H 0.09 1.37 7.87 -51.92 -0.41 0.96 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -29.13 271.09 -7.04 -36.18 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.04 Total: 4.38 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.39 Total: -12.15 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.10 Total: -49.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.38 Total: 16.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.13 -7.04 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.798 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds