Wall clock time and date at job start Mon Mar 30 2020 03:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 C 1.50699 * 109.46955 * 240.00204 * 2 1 3 5 5 H 1.08000 * 119.99499 * 245.19945 * 4 2 1 6 6 C 1.37872 * 120.00129 * 65.20291 * 4 2 1 7 7 N 1.31522 * 119.99525 * 194.91143 * 6 4 2 8 8 Si 1.86800 * 120.00221 * 14.91298 * 6 4 2 9 9 H 1.48498 * 109.46878 * 94.89169 * 8 6 4 10 10 H 1.48497 * 109.47023 * 214.88703 * 8 6 4 11 11 H 1.48495 * 109.47143 * 334.89121 * 8 6 4 12 12 N 1.46899 * 109.47041 * 119.99725 * 2 1 3 13 13 C 1.46906 * 111.00148 * 259.72817 * 12 2 1 14 14 C 1.53001 * 110.27243 * 62.34208 * 13 12 2 15 15 C 1.54591 * 110.30490 * 300.14966 * 13 12 2 16 16 C 1.54940 * 102.92146 * 219.12434 * 15 13 12 17 17 N 1.48537 * 103.22340 * 37.41748 * 16 15 13 18 18 C 1.46902 * 110.99898 * 200.28295 * 17 16 15 19 19 C 1.47898 * 105.81820 * 320.78960 * 17 16 15 20 20 H 1.08996 * 109.47105 * 305.45961 * 1 2 3 21 21 H 1.08999 * 109.47042 * 65.45789 * 1 2 3 22 22 H 1.08997 * 109.46939 * 185.45991 * 1 2 3 23 23 H 0.96998 * 119.99878 * 179.97438 * 7 6 4 24 24 H 1.00897 * 110.99990 * 135.77521 * 12 2 1 25 25 H 1.08998 * 109.47149 * 55.34563 * 14 13 12 26 26 H 1.09004 * 109.46810 * 175.34291 * 14 13 12 27 27 H 1.08995 * 109.47277 * 295.34594 * 14 13 12 28 28 H 1.08998 * 110.73082 * 337.48330 * 15 13 12 29 29 H 1.09004 * 110.72445 * 100.77153 * 15 13 12 30 30 H 1.08998 * 110.66671 * 278.98258 * 16 15 13 31 31 H 1.09000 * 110.81043 * 155.91375 * 16 15 13 32 32 H 1.08995 * 109.47203 * 177.39752 * 18 17 16 33 33 H 1.09007 * 109.46863 * 297.39307 * 18 17 16 34 34 H 1.08996 * 109.47458 * 57.38874 * 18 17 16 35 35 H 1.09000 * 109.92135 * 265.97602 * 19 17 16 36 36 H 1.09008 * 110.08026 * 144.77445 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5822 -1.6348 -1.1336 6 6 1.7900 -0.1801 -2.4799 7 7 1.9589 -0.9215 -3.5529 8 14 1.2218 1.5914 -2.6485 9 1 2.3963 2.4668 -2.8920 10 1 0.2773 1.7018 -3.7891 11 1 0.5402 2.0138 -1.3986 12 7 2.0197 -0.6924 1.1995 13 6 2.4257 0.2689 2.2335 14 6 1.2258 1.1074 2.6783 15 6 3.5544 1.1825 1.7030 16 6 4.4869 1.3300 2.9315 17 7 4.4416 -0.0169 3.5562 18 6 4.8594 0.0411 4.9633 19 6 3.0384 -0.4690 3.4383 20 1 -0.3633 0.5962 0.8370 21 1 -0.3633 0.4269 -0.9348 22 1 -0.3633 -1.0230 0.0978 23 1 1.7880 -0.5486 -4.4319 24 1 2.7766 -1.3194 0.9714 25 1 0.4232 0.4473 3.0073 26 1 1.5220 1.7574 3.5017 27 1 0.8773 1.7148 1.8431 28 1 4.0795 0.7060 0.8752 29 1 3.1567 2.1518 1.4021 30 1 4.1031 2.0853 3.6174 31 1 5.5021 1.5755 2.6198 32 1 4.7729 -0.9497 5.4092 33 1 5.8950 0.3764 5.0213 34 1 4.2206 0.7397 5.5036 35 1 2.4897 -0.2175 4.3459 36 1 3.0049 -1.5456 3.2705 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:38 Heat of formation + Delta-G solvation = -12.793585 kcal Electronic energy + Delta-G solvation = -15134.739366 eV Core-core repulsion = 12845.871669 eV Total energy + Delta-G solvation = -2288.867697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65840 -37.31015 -34.73442 -32.79414 -30.74325 -29.66119 -27.89508 -26.93322 -25.07961 -22.53162 -21.73428 -20.02491 -18.93801 -17.09078 -16.94864 -16.31398 -15.58276 -15.30692 -15.02014 -14.79914 -14.23408 -13.88137 -13.69122 -13.57612 -13.10253 -13.06455 -12.97487 -12.63590 -12.37271 -12.34335 -12.16917 -11.97883 -11.71708 -11.59406 -11.29296 -11.11084 -10.57550 -9.35121 -9.04588 -8.32140 -6.31338 1.31957 1.35480 1.45961 2.33851 3.03039 3.11128 3.43801 3.70954 3.92714 4.12461 4.31146 4.34226 4.52903 4.56838 4.65948 4.72662 4.79794 4.83584 4.89879 4.92518 4.96074 5.02593 5.04727 5.13268 5.22701 5.26326 5.36919 5.60815 5.76110 5.92271 6.06933 6.14496 6.51766 6.72423 6.89900 7.34214 8.84853 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043780 B = 0.008919 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.405956 B = 3138.609037 C = 3198.737619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.195 3.805 3 H 0.011 0.989 4 C -0.534 4.534 5 H 0.033 0.967 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.929 3.071 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.229 1.229 12 N -0.671 5.671 13 C 0.099 3.901 14 C -0.128 4.128 15 C -0.151 4.151 16 C 0.045 3.955 17 N -0.542 5.542 18 C 0.018 3.982 19 C 0.053 3.947 20 H 0.054 0.946 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.265 0.735 24 H 0.333 0.667 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 7.309 16.215 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.573 4.573 5 H 0.052 0.948 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.752 3.248 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.151 1.151 12 N -0.301 5.301 13 C 0.007 3.993 14 C -0.186 4.186 15 C -0.191 4.191 16 C -0.082 4.082 17 N -0.267 5.267 18 C -0.131 4.131 19 C -0.075 4.075 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.151 0.849 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.390 6.827 16.061 17.507 hybrid contribution 0.241 1.107 -0.922 1.461 sum 1.631 7.933 15.138 17.169 Atomic orbital electron populations 1.22091 0.97475 1.00256 0.98924 1.19247 0.92537 0.92723 0.86968 0.97147 1.21559 1.35634 1.08610 0.91456 0.94845 1.25763 0.94989 1.01789 0.95295 1.70126 1.51228 1.37773 0.99001 0.86124 0.78645 0.80677 0.79323 1.20400 1.21119 1.15139 1.60742 1.39675 1.19171 1.10530 1.21927 0.93711 0.91488 0.92192 1.21894 0.97004 0.98920 1.00770 1.23221 0.97518 1.00421 0.97974 1.23146 1.00008 0.90159 0.94929 1.64709 1.21415 1.23380 1.17155 1.22551 1.01274 1.02046 0.87188 1.22858 0.87853 1.00229 0.96566 0.92730 0.95023 0.94110 0.92597 0.84858 0.91725 0.90961 0.93317 0.93158 0.91256 0.92206 0.89947 0.90885 0.90538 0.94519 0.91857 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.51 71.98 0.61 -4.99 16 2 C 0.19 8.98 1.32 44.17 0.06 9.04 16 3 H 0.01 0.50 4.62 -2.39 -0.01 0.49 16 4 C -0.53 -30.48 9.00 25.60 0.23 -30.25 16 5 H 0.03 2.13 7.70 -2.91 -0.02 2.11 16 6 C 0.02 1.16 5.34 84.65 0.45 1.61 16 7 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 8 Si 0.93 43.71 25.77 68.60 1.77 45.47 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.23 -9.74 5.51 99.48 0.55 -9.19 16 12 N -0.67 -27.18 5.90 -447.79 -2.64 -29.82 16 13 C 0.10 3.19 0.84 4.40 0.00 3.19 16 14 C -0.13 -3.61 7.03 71.98 0.51 -3.11 16 15 C -0.15 -4.89 4.82 31.80 0.15 -4.73 16 16 C 0.05 1.16 6.56 86.65 0.57 1.73 16 17 N -0.54 -14.32 5.55 -909.15 -5.05 -19.37 16 18 C 0.02 0.34 9.40 127.69 1.20 1.54 16 19 C 0.05 1.48 6.09 86.45 0.53 2.00 16 20 H 0.05 2.01 6.00 -2.39 -0.01 2.00 16 21 H 0.03 1.39 5.05 -2.39 -0.01 1.38 16 22 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 24 H 0.33 14.62 7.85 -89.70 -0.70 13.92 16 25 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.05 1.49 6.18 -2.39 -0.01 1.47 16 28 H 0.05 1.95 7.98 -2.39 -0.02 1.93 16 29 H 0.07 2.17 7.67 -2.38 -0.02 2.15 16 30 H 0.06 1.30 7.96 -2.39 -0.02 1.28 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.04 0.63 8.00 -2.39 -0.02 0.61 16 35 H 0.06 1.51 7.27 -2.39 -0.02 1.50 16 36 H 0.07 2.24 7.87 -2.38 -0.02 2.22 16 Total: -1.00 -63.63 271.09 -1.13 -64.75 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.18 Total: 21.71 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.31 Total: -23.97 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -7.39 Total: -107.96 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.77 Total: 45.47 kcal Total: -63.63 -1.13 -64.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.961 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds