Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 C 1.50695 * 109.47451 * 119.99657 * 2 1 3 5 5 H 1.07999 * 119.99825 * 120.00050 * 4 2 1 6 6 C 1.37877 * 120.00268 * 300.00453 * 4 2 1 7 7 N 1.31519 * 119.99943 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99982 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47384 * 89.99849 * 8 6 4 10 10 H 1.48498 * 109.46810 * 210.00223 * 8 6 4 11 11 H 1.48503 * 109.46977 * 329.99643 * 8 6 4 12 12 N 1.46897 * 109.47182 * 240.00141 * 2 1 3 13 13 C 1.46898 * 110.99981 * 106.88197 * 12 2 1 14 14 C 1.53000 * 110.35805 * 297.04150 * 13 12 2 15 15 C 1.54782 * 110.39675 * 59.04810 * 13 12 2 16 16 C 1.54936 * 102.84107 * 140.72536 * 15 13 12 17 17 N 1.48537 * 103.37379 * 322.79899 * 16 15 13 18 18 C 1.46900 * 110.99911 * 159.63513 * 17 16 15 19 19 C 1.47900 * 105.82042 * 39.12690 * 17 16 15 20 20 H 1.08998 * 109.47431 * 57.90730 * 1 2 3 21 21 H 1.08997 * 109.47099 * 177.90769 * 1 2 3 22 22 H 1.09004 * 109.46723 * 297.90404 * 1 2 3 23 23 H 0.96996 * 119.99870 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99900 * 342.93257 * 12 2 1 25 25 H 1.09005 * 109.46809 * 300.40062 * 14 13 12 26 26 H 1.09005 * 109.46470 * 60.39256 * 14 13 12 27 27 H 1.08993 * 109.47300 * 180.39254 * 14 13 12 28 28 H 1.08998 * 110.65181 * 22.44344 * 15 13 12 29 29 H 1.09006 * 110.87629 * 259.10976 * 15 13 12 30 30 H 1.08998 * 110.66870 * 204.28692 * 16 15 13 31 31 H 1.08997 * 110.66518 * 81.31333 * 16 15 13 32 32 H 1.09000 * 109.46844 * 59.87398 * 18 17 16 33 33 H 1.09003 * 109.47309 * 179.87354 * 18 17 16 34 34 H 1.09000 * 109.47281 * 299.87811 * 18 17 16 35 35 H 1.08995 * 109.92438 * 94.01878 * 19 17 16 36 36 H 1.09002 * 109.92114 * 215.12059 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1374 -0.8595 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8491 2.1774 1.4923 12 7 2.0197 -0.6924 -1.1994 13 6 2.5707 0.2623 -2.1704 14 6 1.4787 1.2178 -2.6558 15 6 3.7365 1.0613 -1.5394 16 6 4.7547 1.1615 -2.7028 17 7 4.6348 -0.1557 -3.3788 18 6 5.1444 -0.0895 -4.7550 19 6 3.1935 -0.4873 -3.3628 20 1 -0.3634 0.5460 -0.8706 21 1 -0.3633 -1.0270 -0.0375 22 1 -0.3633 0.4810 0.9082 23 1 1.9034 -0.5279 4.4375 24 1 1.2913 -1.2524 -1.6164 25 1 0.6783 0.6461 -3.1256 26 1 1.0788 1.7733 -1.8075 27 1 1.9010 1.9145 -3.3798 28 1 4.1646 0.5167 -0.6979 29 1 3.4053 2.0527 -1.2301 30 1 5.7645 1.3063 -2.3189 31 1 4.4835 1.9690 -3.3829 32 1 6.1942 0.2034 -4.7399 33 1 5.0468 -1.0676 -5.2260 34 1 4.5704 0.6449 -5.3201 35 1 2.7268 -0.1602 -4.2918 36 1 3.0611 -1.5622 -3.2394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = 15.948078 kcal Electronic energy + Delta-G solvation = -15127.715648 eV Core-core repulsion = 12840.094283 eV Total energy + Delta-G solvation = -2287.621365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.31271 -35.93797 -32.89176 -31.16931 -29.55560 -27.70646 -26.79008 -25.00578 -23.97994 -21.34032 -20.20075 -18.64479 -16.65720 -15.73316 -15.23575 -14.79265 -14.45935 -13.98960 -13.59286 -13.15762 -12.85843 -12.59476 -12.39979 -12.11445 -12.00016 -11.62051 -11.31699 -11.16182 -10.94736 -10.84162 -10.62038 -10.37164 -10.14507 -10.01019 -9.41461 -9.14576 -8.49161 -8.21203 -7.34921 -5.97887 -3.93538 3.27221 3.36229 3.40037 4.23505 4.44490 4.84003 4.90979 5.12155 5.30949 5.39556 5.40715 5.46691 5.57881 5.64191 5.79279 5.86833 5.88555 6.07344 6.11202 6.19955 6.26628 6.28888 6.42501 6.45480 6.54989 6.78100 6.83434 7.06244 7.20042 7.24397 7.81426 8.00372 8.37634 8.79550 9.17685 9.65516 11.15978 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044965 B = 0.008957 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.553645 B = 3125.170163 C = 3283.095538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.183 3.817 3 H 0.030 0.970 4 C -0.490 4.490 5 H 0.083 0.917 6 C 0.065 3.935 7 N -0.903 5.903 8 Si 0.883 3.117 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.271 1.271 12 N -0.654 5.654 13 C 0.104 3.896 14 C -0.176 4.176 15 C -0.109 4.109 16 C 0.036 3.964 17 N -0.515 5.515 18 C 0.017 3.983 19 C 0.051 3.949 20 H 0.027 0.973 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.262 0.738 24 H 0.326 0.674 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.037 0.963 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 4.906 -14.414 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.074 3.926 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.101 0.899 6 C -0.136 4.136 7 N -0.542 5.542 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.197 1.197 12 N -0.283 5.283 13 C 0.011 3.989 14 C -0.235 4.235 15 C -0.147 4.147 16 C -0.092 4.092 17 N -0.239 5.239 18 C -0.132 4.132 19 C -0.078 4.078 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.143 0.857 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.863 4.342 -13.674 14.468 hybrid contribution -2.071 1.908 -0.588 2.877 sum -0.208 6.250 -14.263 15.573 Atomic orbital electron populations 1.22856 1.01044 1.00899 0.98953 1.19653 0.88763 0.94642 0.89543 0.95264 1.21089 1.30630 1.13505 0.87597 0.89930 1.24962 0.96121 0.96507 0.96010 1.69890 1.46207 1.40351 0.97755 0.86950 0.80694 0.84201 0.76766 1.20909 1.22528 1.19657 1.60832 1.39144 1.22701 1.05670 1.21782 0.93934 0.91434 0.91764 1.22685 0.99419 1.00148 1.01254 1.22629 0.94321 0.99492 0.98262 1.23239 1.00470 0.89675 0.95854 1.64701 1.16339 1.27584 1.15228 1.22507 1.00195 1.00890 0.89609 1.22933 0.87291 1.01630 0.95899 0.95403 0.92564 0.93699 0.92841 0.85666 0.92982 0.91946 0.93320 0.88315 0.91777 0.90278 0.94597 0.91595 0.91568 0.95998 0.94519 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 8.38 37.16 0.31 -3.52 16 2 C 0.18 4.22 1.22 -68.87 -0.08 4.14 16 3 H 0.03 0.70 4.91 -51.93 -0.25 0.45 16 4 C -0.49 -13.85 9.42 -34.44 -0.32 -14.17 16 5 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 6 C 0.06 1.87 5.45 -17.82 -0.10 1.78 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 8 Si 0.88 22.06 24.39 -169.99 -4.15 17.91 16 9 H -0.28 -6.89 6.85 56.52 0.39 -6.50 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 12 N -0.65 -13.17 5.83 -92.79 -0.54 -13.71 16 13 C 0.10 1.76 0.82 -130.14 -0.11 1.65 16 14 C -0.18 -2.66 7.41 37.16 0.28 -2.38 16 15 C -0.11 -1.90 4.88 -24.77 -0.12 -2.02 16 16 C 0.04 0.52 6.55 -1.90 -0.01 0.51 16 17 N -0.51 -7.73 5.56 -238.71 -1.33 -9.06 16 18 C 0.02 0.20 9.41 60.06 0.57 0.76 16 19 C 0.05 0.77 6.15 -2.75 -0.02 0.75 16 20 H 0.03 0.51 6.71 -51.93 -0.35 0.16 16 21 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 22 H 0.04 1.02 3.24 -51.93 -0.17 0.85 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.33 6.04 8.21 -39.29 -0.32 5.72 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.04 6.21 -51.93 -0.32 0.71 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 2.06 7.96 -51.93 -0.41 1.64 16 29 H 0.06 1.08 7.66 -51.93 -0.40 0.69 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.24 7.99 -51.93 -0.41 -0.18 16 35 H 0.04 0.49 7.23 -51.93 -0.38 0.12 16 36 H 0.09 1.38 7.93 -51.93 -0.41 0.96 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -30.23 271.15 -6.75 -36.98 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.99 Total: 3.49 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 0.39 Total: -12.51 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -1.09 Total: -49.96 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.23 -6.75 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.928 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds