Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 C 1.50695 * 109.47451 * 119.99657 * 2 1 3 5 5 H 1.07999 * 119.99825 * 120.00050 * 4 2 1 6 6 C 1.37877 * 120.00268 * 300.00453 * 4 2 1 7 7 N 1.31519 * 119.99943 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99982 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47384 * 89.99849 * 8 6 4 10 10 H 1.48498 * 109.46810 * 210.00223 * 8 6 4 11 11 H 1.48503 * 109.46977 * 329.99643 * 8 6 4 12 12 N 1.46897 * 109.47182 * 240.00141 * 2 1 3 13 13 C 1.46898 * 110.99981 * 106.88197 * 12 2 1 14 14 C 1.53000 * 110.35805 * 297.04150 * 13 12 2 15 15 C 1.54782 * 110.39675 * 59.04810 * 13 12 2 16 16 C 1.54936 * 102.84107 * 140.72536 * 15 13 12 17 17 N 1.48537 * 103.37379 * 322.79899 * 16 15 13 18 18 C 1.46900 * 110.99911 * 159.63513 * 17 16 15 19 19 C 1.47900 * 105.82042 * 39.12690 * 17 16 15 20 20 H 1.08998 * 109.47431 * 57.90730 * 1 2 3 21 21 H 1.08997 * 109.47099 * 177.90769 * 1 2 3 22 22 H 1.09004 * 109.46723 * 297.90404 * 1 2 3 23 23 H 0.96996 * 119.99870 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99900 * 342.93257 * 12 2 1 25 25 H 1.09005 * 109.46809 * 300.40062 * 14 13 12 26 26 H 1.09005 * 109.46470 * 60.39256 * 14 13 12 27 27 H 1.08993 * 109.47300 * 180.39254 * 14 13 12 28 28 H 1.08998 * 110.65181 * 22.44344 * 15 13 12 29 29 H 1.09006 * 110.87629 * 259.10976 * 15 13 12 30 30 H 1.08998 * 110.66870 * 204.28692 * 16 15 13 31 31 H 1.08997 * 110.66518 * 81.31333 * 16 15 13 32 32 H 1.09000 * 109.46844 * 59.87398 * 18 17 16 33 33 H 1.09003 * 109.47309 * 179.87354 * 18 17 16 34 34 H 1.09000 * 109.47281 * 299.87811 * 18 17 16 35 35 H 1.08995 * 109.92438 * 94.01878 * 19 17 16 36 36 H 1.09002 * 109.92114 * 215.12059 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1374 -0.8595 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9953 3.9070 11 1 0.8491 2.1774 1.4923 12 7 2.0197 -0.6924 -1.1994 13 6 2.5707 0.2623 -2.1704 14 6 1.4787 1.2178 -2.6558 15 6 3.7365 1.0613 -1.5394 16 6 4.7547 1.1615 -2.7028 17 7 4.6348 -0.1557 -3.3788 18 6 5.1444 -0.0895 -4.7550 19 6 3.1935 -0.4873 -3.3628 20 1 -0.3634 0.5460 -0.8706 21 1 -0.3633 -1.0270 -0.0375 22 1 -0.3633 0.4810 0.9082 23 1 1.9034 -0.5279 4.4375 24 1 1.2913 -1.2524 -1.6164 25 1 0.6783 0.6461 -3.1256 26 1 1.0788 1.7733 -1.8075 27 1 1.9010 1.9145 -3.3798 28 1 4.1646 0.5167 -0.6979 29 1 3.4053 2.0527 -1.2301 30 1 5.7645 1.3063 -2.3189 31 1 4.4835 1.9690 -3.3829 32 1 6.1942 0.2034 -4.7399 33 1 5.0468 -1.0676 -5.2260 34 1 4.5704 0.6449 -5.3201 35 1 2.7268 -0.1602 -4.2918 36 1 3.0611 -1.5622 -3.2394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -8.166129 kcal Electronic energy + Delta-G solvation = -15128.761318 eV Core-core repulsion = 12840.094283 eV Total energy + Delta-G solvation = -2288.667036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60805 -37.46236 -34.74244 -32.90898 -30.88686 -29.17822 -27.93184 -27.04448 -25.16344 -22.80814 -21.72921 -20.07872 -18.71936 -17.12016 -16.80725 -16.35312 -15.88345 -15.29132 -15.05827 -14.63419 -14.38905 -14.25330 -13.69232 -13.63928 -13.33555 -12.96470 -12.71869 -12.71079 -12.36551 -12.31002 -12.05056 -11.94800 -11.77881 -11.56794 -11.27908 -11.12663 -10.69251 -9.28550 -8.94632 -8.22877 -6.23480 1.28826 1.34197 1.44476 2.33743 3.10537 3.15008 3.43670 3.65082 3.89457 4.19451 4.33400 4.36800 4.51265 4.52747 4.57043 4.58711 4.68316 4.69453 4.77039 4.85036 4.90528 4.97919 5.02644 5.07673 5.14223 5.25700 5.35617 5.47005 5.73897 5.97333 6.11991 6.22241 6.77321 6.84237 6.89683 7.40733 8.95235 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044965 B = 0.008957 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.553645 B = 3125.170163 C = 3283.095538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.193 3.807 3 H 0.026 0.974 4 C -0.494 4.494 5 H 0.029 0.971 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.301 1.301 11 H -0.249 1.249 12 N -0.673 5.673 13 C 0.099 3.901 14 C -0.168 4.168 15 C -0.114 4.114 16 C 0.045 3.955 17 N -0.541 5.541 18 C 0.018 3.982 19 C 0.057 3.943 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.263 0.737 24 H 0.335 0.665 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 6.832 -17.045 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 H 0.044 0.956 4 C -0.533 4.533 5 H 0.048 0.952 6 C -0.192 4.192 7 N -0.597 5.597 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.229 1.229 11 H -0.173 1.173 12 N -0.303 5.303 13 C 0.007 3.993 14 C -0.228 4.228 15 C -0.152 4.152 16 C -0.083 4.083 17 N -0.265 5.265 18 C -0.131 4.131 19 C -0.071 4.071 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.683 6.265 -16.353 17.525 hybrid contribution -1.577 1.199 0.188 1.990 sum -0.894 7.463 -16.165 17.827 Atomic orbital electron populations 1.22730 0.98986 1.01536 1.00010 1.19334 0.90099 0.93568 0.88611 0.95610 1.21402 1.29525 1.12053 0.90340 0.95236 1.25841 0.97806 1.00097 0.95453 1.70068 1.48434 1.42743 0.98461 0.85833 0.79056 0.80099 0.77184 1.19394 1.22875 1.17270 1.60610 1.39543 1.24056 1.06096 1.21912 0.94302 0.91470 0.91599 1.22577 0.98966 0.99943 1.01270 1.22575 0.95606 0.98997 0.98035 1.23161 0.99696 0.90395 0.94998 1.64653 1.16318 1.28011 1.17568 1.22560 1.00840 1.01842 0.87812 1.22832 0.87661 1.00636 0.95962 0.91689 0.92507 0.94832 0.92829 0.84640 0.91406 0.93310 0.91065 0.93017 0.91476 0.90045 0.92139 0.90631 0.90909 0.94493 0.91932 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.03 8.38 71.98 0.60 -6.43 16 2 C 0.19 8.85 1.22 44.17 0.05 8.90 16 3 H 0.03 1.22 4.91 -2.38 -0.01 1.20 16 4 C -0.49 -28.97 9.42 25.60 0.24 -28.73 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 6 C 0.00 0.22 5.45 84.65 0.46 0.69 16 7 N -0.96 -61.53 13.96 21.45 0.30 -61.23 16 8 Si 0.95 45.51 24.39 68.60 1.67 47.18 16 9 H -0.27 -12.15 6.85 99.48 0.68 -11.47 16 10 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 11 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16 12 N -0.67 -26.81 5.83 -447.47 -2.61 -29.42 16 13 C 0.10 3.18 0.82 4.47 0.00 3.19 16 14 C -0.17 -4.45 7.41 71.98 0.53 -3.91 16 15 C -0.11 -3.90 4.88 31.86 0.16 -3.74 16 16 C 0.05 1.22 6.55 86.65 0.57 1.79 16 17 N -0.54 -15.11 5.56 -909.14 -5.05 -20.16 16 18 C 0.02 0.35 9.41 127.69 1.20 1.56 16 19 C 0.06 1.60 6.15 86.45 0.53 2.13 16 20 H 0.06 2.13 6.71 -2.39 -0.02 2.12 16 21 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 22 H 0.03 1.42 3.24 -2.39 -0.01 1.42 16 23 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.34 12.06 8.21 -89.70 -0.74 11.32 16 25 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.05 1.43 6.21 -2.38 -0.01 1.41 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.24 7.96 -2.39 -0.02 2.22 16 29 H 0.07 2.19 7.66 -2.38 -0.02 2.18 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 1.35 8.00 -2.39 -0.02 1.33 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 0.64 7.99 -2.39 -0.02 0.62 16 35 H 0.06 1.43 7.23 -2.39 -0.02 1.41 16 36 H 0.07 2.22 7.93 -2.39 -0.02 2.20 16 Total: -1.00 -67.90 271.15 -1.10 -69.01 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.23 Total: 19.19 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.35 Total: -24.56 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -7.36 Total: -110.81 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -67.90 -1.10 -69.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.842 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds