Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47162 * 2 1 4 4 C 1.50696 * 109.47571 * 119.99851 * 2 1 3 5 5 H 1.08009 * 120.00052 * 119.99751 * 4 2 1 6 6 C 1.37877 * 119.99971 * 300.00045 * 4 2 1 7 7 N 1.31515 * 120.00034 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47008 * 90.00403 * 8 6 4 10 10 H 1.48507 * 109.47047 * 210.00257 * 8 6 4 11 11 H 1.48496 * 109.47444 * 330.00125 * 8 6 4 12 12 N 1.46904 * 109.47510 * 240.00101 * 2 1 3 13 13 C 1.46897 * 111.00186 * 105.44378 * 12 2 1 14 14 C 1.53003 * 110.35352 * 297.72785 * 13 12 2 15 15 C 1.54596 * 110.30947 * 175.58281 * 13 12 2 16 16 C 1.54935 * 103.08477 * 263.13170 * 15 13 12 17 17 N 1.48538 * 103.22540 * 322.49707 * 16 15 13 18 18 C 1.46905 * 110.99642 * 159.71705 * 17 16 15 19 19 C 1.47908 * 105.81839 * 39.20523 * 17 16 15 20 20 H 1.08998 * 109.47018 * 306.20525 * 1 2 3 21 21 H 1.09000 * 109.47089 * 66.20854 * 1 2 3 22 22 H 1.09005 * 109.46544 * 186.21118 * 1 2 3 23 23 H 0.97003 * 119.99940 * 179.97438 * 7 6 4 24 24 H 1.00899 * 110.99406 * 341.49463 * 12 2 1 25 25 H 1.08999 * 109.47087 * 303.54913 * 14 13 12 26 26 H 1.08997 * 109.47206 * 63.55452 * 14 13 12 27 27 H 1.09004 * 109.46929 * 183.55564 * 14 13 12 28 28 H 1.08997 * 110.72356 * 144.68386 * 15 13 12 29 29 H 1.08997 * 110.72389 * 21.58063 * 15 13 12 30 30 H 1.09001 * 110.66557 * 80.92623 * 16 15 13 31 31 H 1.08996 * 110.66987 * 203.89291 * 16 15 13 32 32 H 1.08991 * 109.47090 * 60.12719 * 18 17 16 33 33 H 1.09004 * 109.46711 * 180.12735 * 18 17 16 34 34 H 1.09000 * 109.47457 * 300.12548 * 18 17 16 35 35 H 1.08999 * 109.91561 * 94.02262 * 19 17 16 36 36 H 1.08997 * 109.91362 * 215.11660 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8303 2.6034 8 14 2.3216 -1.1202 4.0079 9 1 3.6299 -0.5457 4.4122 10 1 1.3433 -0.9492 5.1120 11 1 2.4862 -2.5661 3.7120 12 7 2.0198 -0.6925 -1.1995 13 6 2.5396 0.2650 -2.1848 14 6 1.4263 1.2047 -2.6523 15 6 3.1508 -0.4846 -3.3908 16 6 4.6631 -0.5143 -3.0555 17 7 4.8978 0.8108 -2.4265 18 6 6.1249 0.8002 -1.6190 19 6 3.7109 1.0729 -1.5838 20 1 -0.3633 0.6070 0.8292 21 1 -0.3633 0.4146 -0.9403 22 1 -0.3632 -1.0217 0.1112 23 1 0.7091 1.1615 3.4844 24 1 1.2981 -1.2707 -1.6030 25 1 0.5999 0.6178 -3.0532 26 1 1.0745 1.7990 -1.8091 27 1 1.8115 1.8667 -3.4279 28 1 2.9715 0.0626 -4.3162 29 1 2.7510 -1.4963 -3.4590 30 1 4.8859 -1.3180 -2.3538 31 1 5.2564 -0.6225 -3.9634 32 1 6.9768 0.5618 -2.2557 33 1 6.2716 1.7817 -1.1681 34 1 6.0368 0.0492 -0.8338 35 1 3.9014 0.7450 -0.5619 36 1 3.4758 2.1371 -1.5944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = 4.469898 kcal Electronic energy + Delta-G solvation = -15184.691833 eV Core-core repulsion = 12896.572737 eV Total energy + Delta-G solvation = -2288.119096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08145 -35.54885 -32.99196 -30.90220 -29.03003 -27.20958 -26.56816 -25.01295 -23.75638 -21.19345 -20.11861 -18.57885 -16.24682 -15.59768 -15.06070 -14.66762 -14.01114 -13.76201 -13.14412 -13.06740 -12.85460 -12.33831 -12.07577 -11.76400 -11.46217 -11.11686 -11.05556 -10.93526 -10.86038 -10.77807 -10.45732 -10.36815 -10.20337 -9.97379 -9.59920 -9.00583 -8.34065 -8.03464 -7.21015 -5.96017 -3.98266 3.32524 3.39051 3.43401 4.42643 4.49377 5.04647 5.10317 5.28060 5.35569 5.51980 5.69928 5.81617 5.84360 5.88875 6.05019 6.11865 6.16761 6.28590 6.38341 6.43730 6.46419 6.64196 6.66989 6.79679 6.88288 7.11106 7.21568 7.40808 7.48965 7.74372 7.93460 8.32020 8.58983 8.65330 9.09197 9.66807 11.10835 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.010249 C = 0.008677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.155131 B = 2731.372355 C = 3226.213590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.210 3.790 3 H 0.031 0.969 4 C -0.491 4.491 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.674 5.674 13 C 0.106 3.894 14 C -0.169 4.169 15 C -0.111 4.111 16 C 0.041 3.959 17 N -0.525 5.525 18 C 0.017 3.983 19 C 0.047 3.953 20 H 0.083 0.917 21 H 0.008 0.992 22 H 0.030 0.970 23 H 0.258 0.742 24 H 0.324 0.676 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -0.433 -9.380 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.304 5.304 13 C 0.013 3.987 14 C -0.228 4.228 15 C -0.150 4.150 16 C -0.087 4.087 17 N -0.249 5.249 18 C -0.132 4.132 19 C -0.080 4.080 20 H 0.102 0.898 21 H 0.027 0.973 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.141 0.859 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.849 -0.044 -9.331 10.516 hybrid contribution -0.688 -0.608 1.301 1.592 sum 4.161 -0.652 -8.030 9.067 Atomic orbital electron populations 1.22404 1.00103 1.00261 0.99394 1.19180 0.89942 0.94023 0.86559 0.95100 1.21230 1.29958 1.12180 0.89612 0.92168 1.24954 0.95453 0.95243 0.98941 1.69896 1.37448 1.23251 1.23207 0.86570 0.78411 0.80092 0.82725 1.20900 1.21442 1.20004 1.61007 1.40875 1.22179 1.06321 1.21750 0.93683 0.91659 0.91616 1.22566 0.98879 1.00097 1.01280 1.22544 0.94808 1.00353 0.97265 1.23102 0.96280 0.90766 0.98522 1.64785 1.02609 1.28093 1.29449 1.22467 0.92803 1.01396 0.96530 1.23066 0.88856 0.99140 0.96984 0.89802 0.97277 0.95069 0.93180 0.85935 0.93273 0.91950 0.93034 0.91474 0.91088 0.93284 0.91221 0.92104 0.91765 0.94926 0.90940 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 8.52 37.16 0.32 -3.54 16 2 C 0.21 5.14 1.35 -68.87 -0.09 5.05 16 3 H 0.03 0.83 5.87 -51.93 -0.30 0.52 16 4 C -0.49 -13.50 8.84 -34.44 -0.30 -13.81 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.63 11.39 55.43 0.63 -25.00 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.67 -14.01 5.89 -92.64 -0.55 -14.56 16 13 C 0.11 1.90 0.82 -130.00 -0.11 1.79 16 14 C -0.17 -2.85 7.17 37.16 0.27 -2.58 16 15 C -0.11 -1.70 6.30 -24.87 -0.16 -1.86 16 16 C 0.04 0.63 6.56 -1.90 -0.01 0.62 16 17 N -0.53 -8.73 5.55 -238.40 -1.32 -10.05 16 18 C 0.02 0.26 9.41 60.07 0.57 0.82 16 19 C 0.05 0.90 5.05 -2.50 -0.01 0.89 16 20 H 0.08 2.21 6.26 -51.93 -0.33 1.89 16 21 H 0.01 0.18 6.63 -51.93 -0.34 -0.17 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.32 6.38 8.22 -39.29 -0.32 6.06 16 25 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 26 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 27 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 29 H 0.07 1.04 8.02 -51.93 -0.42 0.62 16 30 H 0.05 0.80 8.00 -51.93 -0.42 0.39 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.52 7.99 -51.93 -0.42 0.11 16 35 H 0.07 1.62 6.64 -51.93 -0.34 1.27 16 36 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -28.01 277.52 -7.82 -35.83 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.11 Total: 4.18 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 0.37 Total: -11.21 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.24 Total: -49.61 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.01 -7.82 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.300 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds