Wall clock time and date at job start Mon Mar 30 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47014 * 2 1 4 4 C 1.50699 * 109.46767 * 240.00261 * 2 1 3 5 5 H 1.08004 * 119.99931 * 239.99418 * 4 2 1 6 6 C 1.37877 * 120.00459 * 60.00264 * 4 2 1 7 7 N 1.31517 * 119.99494 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47464 * 59.99589 * 8 6 4 10 10 H 1.48507 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47171 * 299.99608 * 8 6 4 12 12 N 1.46893 * 109.47168 * 120.00017 * 2 1 3 13 13 C 1.46894 * 111.00269 * 252.55652 * 12 2 1 14 14 C 1.53002 * 110.28733 * 60.49520 * 13 12 2 15 15 C 1.54262 * 110.32549 * 182.62102 * 13 12 2 16 16 C 1.54384 * 105.05970 * 118.89620 * 15 13 12 17 17 N 1.48561 * 104.59525 * 23.85542 * 16 15 13 18 18 C 1.46906 * 110.99920 * 200.96302 * 17 16 15 19 19 C 1.48733 * 104.28541 * 320.57098 * 17 16 15 20 20 H 1.09002 * 109.47293 * 173.65487 * 1 2 3 21 21 H 1.09001 * 109.47439 * 293.65099 * 1 2 3 22 22 H 1.08999 * 109.47301 * 53.65404 * 1 2 3 23 23 H 0.96999 * 119.99721 * 180.02562 * 7 6 4 24 24 H 1.00904 * 110.99732 * 128.60164 * 12 2 1 25 25 H 1.08997 * 109.47261 * 59.39039 * 14 13 12 26 26 H 1.09005 * 109.47088 * 179.38936 * 14 13 12 27 27 H 1.08999 * 109.46801 * 299.39111 * 14 13 12 28 28 H 1.08994 * 110.32737 * 237.79109 * 15 13 12 29 29 H 1.09000 * 110.32605 * 359.89966 * 15 13 12 30 30 H 1.08994 * 110.41285 * 142.63415 * 16 15 13 31 31 H 1.09001 * 110.41282 * 264.95828 * 16 15 13 32 32 H 1.08996 * 109.47350 * 60.12324 * 18 17 16 33 33 H 1.09001 * 109.46716 * 180.12680 * 18 17 16 34 34 H 1.08995 * 109.46980 * 300.12183 * 18 17 16 35 35 H 1.08993 * 110.38778 * 280.64206 * 19 17 16 36 36 H 1.08994 * 110.50460 * 158.14833 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.5827 0.2609 2.1647 14 6 1.5143 1.2638 2.6047 15 6 3.1509 -0.4878 3.3880 16 6 4.6551 -0.1405 3.4077 17 7 4.7518 1.1464 2.6718 18 6 6.1159 1.3662 2.1726 19 6 3.7896 0.9994 1.5472 20 1 -0.3634 -1.0214 -0.1136 21 1 -0.3634 0.4123 0.9413 22 1 -0.3634 0.6090 -0.8277 23 1 0.7081 1.1610 -3.4843 24 1 2.6943 -1.4025 0.9568 25 1 0.6815 0.7301 3.0624 26 1 1.9430 1.9574 3.3282 27 1 1.1574 1.8185 1.7369 28 1 2.6700 -0.1395 4.3020 29 1 3.0105 -1.5625 3.2729 30 1 5.0038 -0.0192 4.4331 31 1 5.2307 -0.9147 2.9003 32 1 6.3898 0.5571 1.4956 33 1 6.1592 2.3161 1.6399 34 1 6.8108 1.3884 3.0120 35 1 4.2296 0.4054 0.7463 36 1 3.4864 1.9775 1.1739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:46 Heat of formation + Delta-G solvation = 2.916827 kcal Electronic energy + Delta-G solvation = -15129.767923 eV Core-core repulsion = 12841.581481 eV Total energy + Delta-G solvation = -2288.186443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17071 -35.48225 -32.99223 -30.89738 -29.00325 -27.57198 -26.47767 -24.97608 -23.83657 -21.07498 -20.04009 -18.46110 -16.69043 -15.50296 -15.23857 -14.68486 -14.10278 -13.69735 -13.55801 -13.08016 -12.49195 -12.37052 -12.00526 -11.54531 -11.35873 -11.18508 -11.17389 -11.01875 -10.90710 -10.83688 -10.56021 -10.28032 -10.18890 -9.97141 -9.61434 -8.80554 -8.45821 -8.24865 -7.23949 -6.02979 -4.10282 3.28214 3.33373 3.35642 4.32866 4.39791 5.00142 5.07145 5.25125 5.32548 5.47742 5.62189 5.65511 5.69749 5.83489 5.97828 5.99341 6.18165 6.30517 6.34952 6.44316 6.49029 6.70681 6.84684 6.94074 7.10739 7.21318 7.27578 7.38576 7.57513 7.77289 8.01637 8.21315 8.39377 8.69711 9.03036 9.55677 11.02443 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.009575 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.157978 B = 2923.596667 C = 3342.896044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.210 3.790 3 H 0.018 0.982 4 C -0.530 4.530 5 H 0.055 0.945 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.679 5.679 13 C 0.115 3.885 14 C -0.125 4.125 15 C -0.115 4.115 16 C 0.031 3.969 17 N -0.517 5.517 18 C 0.015 3.985 19 C 0.011 3.989 20 H 0.027 0.973 21 H 0.011 0.989 22 H 0.073 0.927 23 H 0.261 0.739 24 H 0.330 0.670 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.780 -0.080 9.068 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.036 0.964 4 C -0.569 4.569 5 H 0.073 0.927 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.310 5.310 13 C 0.023 3.977 14 C -0.183 4.183 15 C -0.154 4.154 16 C -0.098 4.098 17 N -0.241 5.241 18 C -0.135 4.135 19 C -0.118 4.118 20 H 0.046 0.954 21 H 0.030 0.970 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.939 0.489 9.552 10.765 hybrid contribution 1.488 -0.906 -2.022 2.669 sum 6.427 -0.416 7.530 9.909 Atomic orbital electron populations 1.21741 0.97974 0.99756 0.98498 1.19103 0.92480 0.93275 0.84840 0.96427 1.21464 1.31722 1.12540 0.91176 0.92735 1.24900 0.94956 0.94937 0.98904 1.69899 1.36320 1.22712 1.23520 0.86664 0.79020 0.79889 0.82425 1.20226 1.21244 1.20474 1.60989 1.40027 1.13839 1.16097 1.21580 0.91906 0.91993 0.92268 1.21798 0.97768 0.97753 1.00986 1.22435 0.93781 1.00656 0.98502 1.23115 0.97225 0.90616 0.98802 1.65385 1.05625 1.31533 1.21549 1.22472 0.90667 1.01040 0.99275 1.24018 0.93763 1.01645 0.92413 0.95380 0.97000 0.90879 0.92884 0.85259 0.92626 0.92997 0.92149 0.91141 0.90798 0.90806 0.94295 0.95546 0.91519 0.91904 0.93125 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.97 37.16 0.33 -2.68 16 2 C 0.21 5.21 1.68 -68.87 -0.12 5.10 16 3 H 0.02 0.48 5.76 -51.93 -0.30 0.18 16 4 C -0.53 -14.35 8.60 -34.44 -0.30 -14.65 16 5 H 0.05 1.46 7.36 -52.48 -0.39 1.07 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.19 11.39 55.43 0.63 -24.55 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.34 5.92 -92.87 -0.55 -14.89 16 13 C 0.12 2.10 0.89 -130.22 -0.12 1.99 16 14 C -0.13 -2.23 7.25 37.16 0.27 -1.96 16 15 C -0.12 -1.76 6.37 -25.35 -0.16 -1.92 16 16 C 0.03 0.44 6.49 -2.18 -0.01 0.42 16 17 N -0.52 -8.20 5.66 -238.08 -1.35 -9.54 16 18 C 0.01 0.20 9.53 60.07 0.57 0.77 16 19 C 0.01 0.21 4.46 -2.08 -0.01 0.20 16 20 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.01 0.25 6.92 -51.93 -0.36 -0.11 16 22 H 0.07 1.97 6.27 -51.93 -0.33 1.64 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.33 6.98 7.77 -39.29 -0.31 6.67 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.19 6.33 -51.93 -0.33 0.86 16 28 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 29 H 0.07 1.11 7.91 -51.93 -0.41 0.70 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.55 7.98 -51.93 -0.41 0.13 16 32 H 0.03 0.37 7.98 -51.93 -0.41 -0.05 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 1.03 7.79 -51.93 -0.40 0.63 16 36 H 0.08 1.56 7.59 -51.93 -0.39 1.16 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -27.71 277.90 -7.84 -35.56 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.11 Total: 4.07 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 0.37 Total: -11.03 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -1.27 Total: -48.99 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.71 -7.84 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.472 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds