Wall clock time and date at job start Mon Mar 30 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47014 * 2 1 4 4 C 1.50699 * 109.46767 * 240.00261 * 2 1 3 5 5 H 1.08004 * 119.99931 * 239.99418 * 4 2 1 6 6 C 1.37877 * 120.00459 * 60.00264 * 4 2 1 7 7 N 1.31517 * 119.99494 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00157 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47464 * 59.99589 * 8 6 4 10 10 H 1.48507 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47171 * 299.99608 * 8 6 4 12 12 N 1.46893 * 109.47168 * 120.00017 * 2 1 3 13 13 C 1.46894 * 111.00269 * 252.55652 * 12 2 1 14 14 C 1.53002 * 110.28733 * 60.49520 * 13 12 2 15 15 C 1.54262 * 110.32549 * 182.62102 * 13 12 2 16 16 C 1.54384 * 105.05970 * 118.89620 * 15 13 12 17 17 N 1.48561 * 104.59525 * 23.85542 * 16 15 13 18 18 C 1.46906 * 110.99920 * 200.96302 * 17 16 15 19 19 C 1.48733 * 104.28541 * 320.57098 * 17 16 15 20 20 H 1.09002 * 109.47293 * 173.65487 * 1 2 3 21 21 H 1.09001 * 109.47439 * 293.65099 * 1 2 3 22 22 H 1.08999 * 109.47301 * 53.65404 * 1 2 3 23 23 H 0.96999 * 119.99721 * 180.02562 * 7 6 4 24 24 H 1.00904 * 110.99732 * 128.60164 * 12 2 1 25 25 H 1.08997 * 109.47261 * 59.39039 * 14 13 12 26 26 H 1.09005 * 109.47088 * 179.38936 * 14 13 12 27 27 H 1.08999 * 109.46801 * 299.39111 * 14 13 12 28 28 H 1.08994 * 110.32737 * 237.79109 * 15 13 12 29 29 H 1.09000 * 110.32605 * 359.89966 * 15 13 12 30 30 H 1.08994 * 110.41285 * 142.63415 * 16 15 13 31 31 H 1.09001 * 110.41282 * 264.95828 * 16 15 13 32 32 H 1.08996 * 109.47350 * 60.12324 * 18 17 16 33 33 H 1.09001 * 109.46716 * 180.12680 * 18 17 16 34 34 H 1.08995 * 109.46980 * 300.12183 * 18 17 16 35 35 H 1.08993 * 110.38778 * 280.64206 * 19 17 16 36 36 H 1.08994 * 110.50460 * 158.14833 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.5827 0.2609 2.1647 14 6 1.5143 1.2638 2.6047 15 6 3.1509 -0.4878 3.3880 16 6 4.6551 -0.1405 3.4077 17 7 4.7518 1.1464 2.6718 18 6 6.1159 1.3662 2.1726 19 6 3.7896 0.9994 1.5472 20 1 -0.3634 -1.0214 -0.1136 21 1 -0.3634 0.4123 0.9413 22 1 -0.3634 0.6090 -0.8277 23 1 0.7081 1.1610 -3.4843 24 1 2.6943 -1.4025 0.9568 25 1 0.6815 0.7301 3.0624 26 1 1.9430 1.9574 3.3282 27 1 1.1574 1.8185 1.7369 28 1 2.6700 -0.1395 4.3020 29 1 3.0105 -1.5625 3.2729 30 1 5.0038 -0.0192 4.4331 31 1 5.2307 -0.9147 2.9003 32 1 6.3898 0.5571 1.4956 33 1 6.1592 2.3161 1.6399 34 1 6.8108 1.3884 3.0120 35 1 4.2296 0.4054 0.7463 36 1 3.4864 1.9775 1.1739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:46 Heat of formation + Delta-G solvation = -16.800618 kcal Electronic energy + Delta-G solvation = -15130.622936 eV Core-core repulsion = 12841.581481 eV Total energy + Delta-G solvation = -2289.041455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58015 -37.15302 -34.79456 -32.58056 -30.40926 -29.34001 -27.85544 -27.05004 -25.15354 -22.56965 -21.67885 -20.02643 -18.64498 -16.97653 -16.79058 -16.45222 -15.58439 -15.15391 -15.14566 -14.54750 -13.90841 -13.85481 -13.73922 -13.34969 -13.01686 -12.87119 -12.76767 -12.44736 -12.42098 -12.32024 -12.28591 -12.14266 -11.87242 -11.55644 -11.26857 -10.85142 -10.54595 -9.53941 -8.99528 -8.12426 -6.27134 1.38809 1.40143 1.47558 2.39226 3.06163 3.16160 3.58487 3.78356 3.91433 4.15434 4.35029 4.38810 4.51887 4.55497 4.71281 4.84891 4.88041 4.89431 4.94158 5.01470 5.02720 5.17023 5.17940 5.27598 5.36919 5.42228 5.53233 5.66645 5.84321 6.00017 6.06689 6.19123 6.46664 6.82035 7.05587 7.42940 8.91606 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.009575 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.157978 B = 2923.596667 C = 3342.896044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.220 3.780 3 H -0.008 1.008 4 C -0.547 4.547 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.675 5.675 13 C 0.107 3.893 14 C -0.119 4.119 15 C -0.108 4.108 16 C 0.033 3.967 17 N -0.520 5.520 18 C 0.013 3.987 19 C 0.020 3.980 20 H 0.020 0.980 21 H 0.028 0.972 22 H 0.048 0.952 23 H 0.262 0.738 24 H 0.329 0.671 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.024 0.976 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -0.842 10.316 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 H 0.009 0.991 4 C -0.585 4.585 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.015 3.985 14 C -0.177 4.177 15 C -0.146 4.146 16 C -0.095 4.095 17 N -0.244 5.244 18 C -0.136 4.136 19 C -0.110 4.110 20 H 0.039 0.961 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.018 -0.278 10.821 12.385 hybrid contribution 1.177 -0.637 -2.356 2.709 sum 7.196 -0.915 8.465 11.148 Atomic orbital electron populations 1.21585 0.98171 0.98728 0.98372 1.18835 0.92235 0.91929 0.85850 0.99074 1.21807 1.31722 1.12641 0.92349 0.92788 1.25675 0.95175 0.95636 1.01825 1.70030 1.37258 1.23898 1.24086 0.85669 0.78591 0.78838 0.78858 1.19653 1.20935 1.19901 1.60926 1.40553 1.14199 1.14831 1.21757 0.91928 0.92018 0.92790 1.21738 0.97916 0.97760 1.00246 1.22403 0.94444 1.00487 0.97295 1.23201 0.96505 0.89747 1.00017 1.65386 1.06166 1.32624 1.20179 1.22547 0.89971 1.00720 1.00317 1.23758 0.94720 0.99812 0.92703 0.96106 0.95290 0.93310 0.92922 0.85343 0.92049 0.91116 0.94895 0.89408 0.90376 0.88002 0.94053 0.96064 0.91745 0.89135 0.95766 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.56 8.97 71.98 0.65 -4.92 16 2 C 0.22 11.10 1.68 44.17 0.07 11.17 16 3 H -0.01 -0.47 5.76 -2.39 -0.01 -0.48 16 4 C -0.55 -29.93 8.60 25.60 0.22 -29.71 16 5 H 0.05 2.89 7.36 -2.91 -0.02 2.87 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -52.91 11.39 21.45 0.24 -52.66 16 8 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.67 -28.40 5.92 -447.73 -2.65 -31.05 16 13 C 0.11 3.82 0.89 4.43 0.00 3.83 16 14 C -0.12 -4.14 7.25 71.98 0.52 -3.62 16 15 C -0.11 -3.00 6.37 31.49 0.20 -2.80 16 16 C 0.03 0.84 6.49 86.45 0.56 1.40 16 17 N -0.52 -15.52 5.66 -907.15 -5.13 -20.65 16 18 C 0.01 0.34 9.53 127.69 1.22 1.56 16 19 C 0.02 0.75 4.46 86.42 0.39 1.14 16 20 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.03 1.31 6.92 -2.39 -0.02 1.29 16 22 H 0.05 2.69 6.27 -2.39 -0.01 2.67 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.33 13.84 7.77 -89.69 -0.70 13.15 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.03 1.30 6.33 -2.39 -0.02 1.29 16 28 H 0.09 2.16 7.71 -2.39 -0.02 2.14 16 29 H 0.08 2.13 7.91 -2.39 -0.02 2.11 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.04 7.98 -2.39 -0.02 1.02 16 32 H 0.02 0.56 7.98 -2.39 -0.02 0.54 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.02 1.01 7.79 -2.39 -0.02 0.99 16 36 H 0.06 2.28 7.59 -2.39 -0.02 2.26 16 Total: -1.00 -59.08 277.90 -0.89 -59.97 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.34 Total: 19.26 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.28 Total: -20.58 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -7.54 Total: -104.36 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -59.08 -0.89 -59.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.173 kcal (2) G-P(sol) polarization free energy of solvation -59.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds