Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 H 1.09001 * 110.87920 * 81.01712 * 5 4 3 7 7 N 1.46504 * 110.72226 * 204.22899 * 5 4 3 8 8 C 1.36936 * 120.00031 * 268.50340 * 7 5 4 9 9 H 1.08001 * 120.00001 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00140 * 180.02562 * 8 7 5 11 11 N 1.31626 * 119.99823 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00093 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46870 * 89.99887 * 12 10 8 14 14 H 1.48501 * 109.46675 * 209.99891 * 12 10 8 15 15 H 1.48494 * 109.47078 * 329.99954 * 12 10 8 16 16 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 17 17 C 1.52998 * 110.30947 * 263.04007 * 16 5 4 18 18 C 1.53004 * 110.39035 * 140.91705 * 16 5 4 19 19 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 20 20 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 25 25 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 26 26 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 27 27 H 0.96995 * 120.00191 * 88.50486 * 7 5 4 28 28 H 0.97001 * 119.99501 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46987 * 177.16963 * 17 16 5 30 30 H 1.09000 * 109.47584 * 297.16874 * 17 16 5 31 31 H 1.09003 * 109.47048 * 57.17182 * 17 16 5 32 32 H 1.08996 * 109.47110 * 302.78149 * 18 16 5 33 33 H 1.08993 * 109.47051 * 62.78442 * 18 16 5 34 34 H 1.08997 * 109.46871 * 182.78442 * 18 16 5 35 35 H 1.08994 * 109.91868 * 333.51091 * 19 3 2 36 36 H 1.08998 * 109.91549 * 94.80978 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 1 2.1873 4.1312 0.5347 7 7 2.2812 3.9103 2.6330 8 6 1.4120 4.9359 2.8936 9 1 0.7978 5.3377 2.1013 10 6 1.3205 5.4592 4.1760 11 7 2.0696 4.9699 5.1414 12 14 0.1354 6.8588 4.5313 13 1 -1.1817 6.3024 4.9322 14 1 0.6748 7.6966 5.6324 15 1 -0.0289 7.6900 3.3118 16 6 3.7624 2.7089 1.0513 17 6 4.4098 2.3541 2.3913 18 6 4.6693 3.6516 0.2575 19 6 3.4784 1.4313 0.2398 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 0.4126 2.5207 0.8152 26 1 1.3517 1.5730 2.0139 27 1 2.8326 3.5493 3.3446 28 1 2.0053 5.3354 6.0376 29 1 5.3610 1.8523 2.2138 30 1 4.5811 3.2651 2.9648 31 1 3.7485 1.6919 2.9502 32 1 4.1911 3.9047 -0.6886 33 1 4.8403 4.5613 0.8330 34 1 5.6226 3.1602 0.0628 35 1 3.7895 0.5542 0.8072 36 1 4.0100 1.4695 -0.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642877413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = 10.422045 kcal Electronic energy + Delta-G solvation = -15045.372535 eV Core-core repulsion = 12757.511543 eV Total energy + Delta-G solvation = -2287.860992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27490 -35.09955 -33.37027 -30.71348 -30.06563 -27.30378 -26.86357 -24.57124 -23.75087 -21.66891 -20.08391 -18.23155 -17.19662 -15.53019 -15.24271 -14.33912 -14.14807 -13.82795 -13.64754 -13.02709 -12.90599 -12.27833 -12.09760 -12.06421 -11.70034 -11.49635 -11.06102 -10.95323 -10.89162 -10.75497 -10.71304 -10.33898 -10.17160 -10.11291 -9.70985 -9.55339 -8.85901 -8.00493 -6.93753 -5.76153 -3.04288 3.44386 3.49871 3.51349 4.36984 4.63605 5.02110 5.21954 5.30547 5.39142 5.45886 5.60291 5.65776 5.84649 5.89939 5.92558 5.98054 6.00664 6.11508 6.12423 6.25371 6.28887 6.36349 6.41990 6.47525 6.55926 6.71688 6.81560 6.89482 6.98164 7.36643 7.49050 7.73638 8.43637 9.54630 10.12939 10.47647 11.46658 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.009347 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.333901 B = 2994.761923 C = 3504.148569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 N -0.520 5.520 4 C 0.016 3.984 5 C 0.186 3.814 6 H 0.064 0.936 7 N -0.719 5.719 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.291 1.291 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.086 4.086 17 C -0.135 4.135 18 C -0.128 4.128 19 C 0.048 3.952 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.388 0.612 28 H 0.255 0.745 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -7.985 -9.126 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 N -0.245 5.245 4 C -0.114 4.114 5 C 0.074 3.926 6 H 0.082 0.918 7 N -0.361 5.361 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.583 5.583 12 Si 0.737 3.263 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.087 4.087 17 C -0.193 4.193 18 C -0.186 4.186 19 C -0.081 4.081 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.225 0.775 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.031 -7.613 -9.612 12.429 hybrid contribution -0.363 0.128 1.329 1.384 sum 1.668 -7.485 -8.282 11.288 Atomic orbital electron populations 1.21833 0.95181 1.01134 1.02769 1.22208 0.95903 0.90407 0.99957 1.64785 1.04406 1.10836 1.44495 1.24041 0.99885 0.96347 0.91151 1.21125 0.89873 0.92591 0.89033 0.91846 1.42644 1.48159 1.40327 1.04975 1.19301 1.14588 1.08921 0.94143 0.91149 1.24732 1.00113 1.00134 0.95993 1.69663 1.42718 1.44690 1.01220 0.86196 0.80545 0.81983 0.77533 1.21799 1.21833 1.20731 1.21649 0.97379 0.94611 0.95089 1.21769 0.98908 1.02094 0.96501 1.21762 0.98007 0.99270 0.99550 1.22953 0.89390 0.96856 0.98863 0.92060 0.92196 0.92829 0.95293 0.91477 0.90915 0.93994 0.77490 0.93554 0.93774 0.90894 0.92976 0.92785 0.92198 0.93608 0.94332 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.57 37.16 0.36 -1.61 16 2 C 0.04 0.61 5.75 -3.83 -0.02 0.59 16 3 N -0.52 -8.52 5.40 -230.45 -1.24 -9.76 16 4 C 0.02 0.31 4.78 -1.90 -0.01 0.30 16 5 C 0.19 3.83 3.15 -66.07 -0.21 3.62 16 6 H 0.06 1.37 7.81 -51.93 -0.41 0.96 16 7 N -0.72 -17.98 4.97 -51.63 -0.26 -18.24 16 8 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 12 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C -0.09 -1.48 0.95 -153.15 -0.15 -1.62 16 17 C -0.14 -2.37 7.02 37.16 0.26 -2.11 16 18 C -0.13 -2.01 8.22 37.16 0.31 -1.70 16 19 C 0.05 0.74 6.03 -2.75 -0.02 0.72 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.41 7.81 -51.93 -0.41 0.01 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.42 7.66 -51.93 -0.40 1.02 16 26 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 27 H 0.39 10.15 5.13 -40.82 -0.21 9.94 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.45 6.99 -51.93 -0.36 1.09 16 31 H 0.05 0.96 7.96 -51.93 -0.41 0.55 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.58 7.11 -51.93 -0.37 0.21 16 36 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 LS Contribution 281.29 15.07 4.24 4.24 Total: -1.00 -29.05 281.29 -7.52 -36.57 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.24 Total: 6.19 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 0.28 Total: -9.07 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.78 Total: -55.36 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.05 -7.52 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds