Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.48542 * 110.99968 * 52.60297 * 3 2 1 5 5 C 1.54931 * 103.22694 * 159.72119 * 4 3 2 6 6 H 1.09001 * 110.87920 * 81.01712 * 5 4 3 7 7 N 1.46504 * 110.72226 * 204.22899 * 5 4 3 8 8 C 1.36936 * 120.00031 * 268.50340 * 7 5 4 9 9 H 1.08001 * 120.00001 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00140 * 180.02562 * 8 7 5 11 11 N 1.31626 * 119.99823 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00093 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46870 * 89.99887 * 12 10 8 14 14 H 1.48501 * 109.46675 * 209.99891 * 12 10 8 15 15 H 1.48494 * 109.47078 * 329.99954 * 12 10 8 16 16 C 1.54599 * 102.92476 * 322.58603 * 5 4 3 17 17 C 1.52998 * 110.30947 * 263.04007 * 16 5 4 18 18 C 1.53004 * 110.39035 * 140.91705 * 16 5 4 19 19 C 1.47903 * 111.00089 * 169.99840 * 3 2 1 20 20 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 25 25 H 1.08999 * 110.66829 * 278.16218 * 4 3 2 26 26 H 1.09005 * 110.66356 * 41.28669 * 4 3 2 27 27 H 0.96995 * 120.00191 * 88.50486 * 7 5 4 28 28 H 0.97001 * 119.99501 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46987 * 177.16963 * 17 16 5 30 30 H 1.09000 * 109.47584 * 297.16874 * 17 16 5 31 31 H 1.09003 * 109.47048 * 57.17182 * 17 16 5 32 32 H 1.08996 * 109.47110 * 302.78149 * 18 16 5 33 33 H 1.08993 * 109.47051 * 62.78442 * 18 16 5 34 34 H 1.08997 * 109.46871 * 182.78442 * 18 16 5 35 35 H 1.08994 * 109.91868 * 333.51091 * 19 3 2 36 36 H 1.08998 * 109.91549 * 94.80978 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3584 1.2793 6 1 2.1873 4.1312 0.5347 7 7 2.2812 3.9103 2.6330 8 6 1.4120 4.9359 2.8936 9 1 0.7978 5.3377 2.1013 10 6 1.3205 5.4592 4.1760 11 7 2.0696 4.9699 5.1414 12 14 0.1354 6.8588 4.5313 13 1 -1.1817 6.3024 4.9322 14 1 0.6748 7.6966 5.6324 15 1 -0.0289 7.6900 3.3118 16 6 3.7624 2.7089 1.0513 17 6 4.4098 2.3541 2.3913 18 6 4.6693 3.6516 0.2575 19 6 3.4784 1.4313 0.2398 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 0.4126 2.5207 0.8152 26 1 1.3517 1.5730 2.0139 27 1 2.8326 3.5493 3.3446 28 1 2.0053 5.3354 6.0376 29 1 5.3610 1.8523 2.2138 30 1 4.5811 3.2651 2.9648 31 1 3.7485 1.6919 2.9502 32 1 4.1911 3.9047 -0.6886 33 1 4.8403 4.5613 0.8330 34 1 5.6226 3.1602 0.0628 35 1 3.7895 0.5542 0.8072 36 1 4.0100 1.4695 -0.7110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642877413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -9.040498 kcal Electronic energy + Delta-G solvation = -15046.216494 eV Core-core repulsion = 12757.511543 eV Total energy + Delta-G solvation = -2288.704951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70908 -36.60330 -35.14866 -32.63582 -31.31426 -28.94001 -28.27614 -25.98551 -25.55126 -23.16045 -21.43850 -19.81327 -19.15194 -17.05012 -16.71579 -16.07975 -15.69709 -15.38260 -15.01244 -14.64662 -14.34279 -13.78242 -13.49409 -13.46804 -13.05659 -12.91675 -12.80305 -12.68800 -12.45545 -12.16109 -12.07848 -12.00301 -11.90517 -11.53094 -11.44684 -11.22366 -10.86908 -9.33298 -8.98640 -7.94418 -5.22184 1.46730 1.47940 1.56562 2.55364 3.09635 3.37722 3.64521 3.91862 3.96311 4.20155 4.25292 4.32413 4.44835 4.50231 4.57820 4.62567 4.71210 4.81333 4.86982 4.91147 5.01864 5.03552 5.11566 5.17538 5.25065 5.27511 5.33659 5.43303 5.51767 5.54525 5.96785 6.20774 6.29664 7.35094 8.11706 8.36050 9.29095 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.009347 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.333901 B = 2994.761923 C = 3504.148569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 N -0.521 5.521 4 C 0.031 3.969 5 C 0.175 3.825 6 H 0.051 0.949 7 N -0.730 5.730 8 C -0.240 4.240 9 H 0.072 0.928 10 C -0.075 4.075 11 N -0.969 5.969 12 Si 0.971 3.029 13 H -0.289 1.289 14 H -0.295 1.295 15 H -0.270 1.270 16 C -0.083 4.083 17 C -0.127 4.127 18 C -0.123 4.123 19 C 0.052 3.948 20 H 0.061 0.939 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.380 0.620 28 H 0.250 0.750 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -8.905 -10.866 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 N -0.246 5.246 4 C -0.100 4.100 5 C 0.065 3.935 6 H 0.070 0.930 7 N -0.372 5.372 8 C -0.372 4.372 9 H 0.090 0.910 10 C -0.267 4.267 11 N -0.620 5.620 12 Si 0.800 3.200 13 H -0.216 1.216 14 H -0.222 1.222 15 H -0.195 1.195 16 C -0.084 4.084 17 C -0.185 4.185 18 C -0.181 4.181 19 C -0.076 4.076 20 H 0.080 0.920 21 H 0.057 0.943 22 H 0.096 0.904 23 H 0.046 0.954 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.216 0.784 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.301 -8.552 -11.407 14.441 hybrid contribution -0.432 0.351 1.795 1.880 sum 1.869 -8.201 -9.612 12.772 Atomic orbital electron populations 1.21811 0.94656 1.02428 1.01714 1.22345 0.96448 0.88905 1.01030 1.64815 1.04882 1.12276 1.42629 1.23679 0.99115 0.95832 0.91364 1.21324 0.92857 0.92859 0.86506 0.93047 1.42785 1.47669 1.40140 1.06560 1.19647 1.14304 1.09031 0.94183 0.90972 1.25511 1.02230 1.02929 0.96000 1.69816 1.44607 1.46287 1.01313 0.85177 0.78313 0.79143 0.77378 1.21582 1.22190 1.19512 1.21637 0.95516 0.95726 0.95557 1.21679 1.00165 1.00542 0.96107 1.21721 0.99100 0.98184 0.99064 1.22988 0.88930 0.95884 0.99788 0.91970 0.94341 0.90424 0.95431 0.88977 0.91955 0.95940 0.78442 0.94083 0.90561 0.93905 0.94553 0.92057 0.94337 0.90662 0.93323 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.57 71.98 0.69 -2.89 16 2 C 0.04 1.03 5.75 86.30 0.50 1.53 16 3 N -0.52 -15.99 5.40 -883.02 -4.76 -20.75 16 4 C 0.03 1.17 4.78 86.65 0.41 1.59 16 5 C 0.17 7.23 3.15 46.19 0.15 7.38 16 6 H 0.05 2.24 7.81 -2.39 -0.02 2.22 16 7 N -0.73 -37.42 4.97 -317.25 -1.58 -38.99 16 8 C -0.24 -13.52 9.96 84.03 0.84 -12.69 16 9 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 12 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 C -0.08 -2.75 0.95 -51.30 -0.05 -2.80 16 17 C -0.13 -4.40 7.02 71.98 0.51 -3.89 16 18 C -0.12 -3.60 8.22 71.98 0.59 -3.01 16 19 C 0.05 1.46 6.03 86.45 0.52 1.98 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.04 1.08 6.79 -2.39 -0.02 1.06 16 22 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.03 0.72 7.81 -2.39 -0.02 0.70 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 26 H 0.02 0.93 8.00 -2.38 -0.02 0.91 16 27 H 0.38 20.58 5.13 -92.71 -0.48 20.10 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.73 6.99 -2.39 -0.02 1.71 16 31 H 0.04 1.34 7.96 -2.39 -0.02 1.32 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.29 7.11 -2.39 -0.02 1.27 16 36 H 0.10 2.28 7.68 -2.39 -0.02 2.26 16 Total: -1.00 -62.71 281.29 1.14 -61.57 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.55 Total: 25.49 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.62 Total: -16.67 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -6.06 Total: -119.18 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -62.71 1.14 -61.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.526 kcal (2) G-P(sol) polarization free energy of solvation -62.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds