Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.48560 * 111.00129 * 69.87826 * 3 2 1 5 5 C 1.54377 * 104.59882 * 159.03553 * 4 3 2 6 6 H 1.08995 * 110.32807 * 217.14707 * 5 4 3 7 7 N 1.46497 * 110.32066 * 95.04145 * 5 4 3 8 8 C 1.36943 * 119.99871 * 86.45675 * 7 5 4 9 9 H 1.07997 * 120.00139 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99760 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00024 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99692 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47185 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47208 * 120.00132 * 12 10 8 15 15 H 1.48497 * 109.46990 * 240.00174 * 12 10 8 16 16 C 1.54256 * 105.05892 * 336.14816 * 5 4 3 17 17 C 1.53008 * 110.32536 * 118.89389 * 16 5 4 18 18 C 1.52999 * 110.32567 * 240.99771 * 16 5 4 19 19 C 1.48561 * 110.99902 * 185.29195 * 3 2 1 20 20 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 25 25 H 1.09000 * 110.40968 * 277.82278 * 4 3 2 26 26 H 1.09008 * 110.40989 * 40.25837 * 4 3 2 27 27 H 0.96998 * 120.00258 * 266.45308 * 7 5 4 28 28 H 0.97005 * 119.99913 * 179.97438 * 11 10 8 29 29 H 1.09003 * 109.46674 * 59.99917 * 17 16 5 30 30 H 1.08997 * 109.46928 * 180.02562 * 17 16 5 31 31 H 1.08997 * 109.46980 * 299.99845 * 17 16 5 32 32 H 1.09003 * 109.46987 * 60.00075 * 18 16 5 33 33 H 1.09000 * 109.47304 * 179.97438 * 18 16 5 34 34 H 1.09001 * 109.46994 * 300.00324 * 18 16 5 35 35 H 1.09005 * 110.41459 * 319.74535 * 19 3 2 36 36 H 1.09001 * 110.41012 * 82.18114 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 1.3023 5 6 2.7452 3.2225 1.3578 6 1 3.1143 3.3582 2.3743 7 7 2.1089 4.4525 0.8799 8 6 1.3973 5.2370 1.7479 9 1 1.3055 4.9492 2.7848 10 6 0.7948 6.4028 1.2952 11 7 0.9079 6.7543 0.0319 12 14 -0.1753 7.4734 2.4794 13 1 -0.1510 6.8623 3.8326 14 1 0.4336 8.8266 2.5357 15 1 -1.5803 7.5819 2.0111 16 6 3.8977 2.8150 0.4169 17 6 4.0273 3.8190 -0.7305 18 6 5.2123 2.7257 1.1945 19 6 3.4991 1.4267 -0.1279 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 0.7221 2.4152 1.3341 26 1 1.9288 1.3543 2.1250 27 1 2.1916 4.7112 -0.0512 28 1 0.4865 7.5687 -0.2845 29 1 4.2326 4.8097 -0.3249 30 1 4.8443 3.5179 -1.3861 31 1 3.0970 3.8442 -1.2979 32 1 5.1175 1.9803 1.9841 33 1 6.0162 2.4369 0.5174 34 1 5.4398 3.6959 1.6362 35 1 3.9549 0.6381 0.4709 36 1 3.7932 1.3296 -1.1730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642877415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = 14.122732 kcal Electronic energy + Delta-G solvation = -15091.069258 eV Core-core repulsion = 12803.368740 eV Total energy + Delta-G solvation = -2287.700518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.20998 -34.98714 -33.31602 -30.69664 -30.04213 -27.44349 -26.57736 -24.61220 -23.57247 -21.69329 -20.14612 -18.18304 -17.05149 -15.49213 -15.20278 -14.62514 -13.87782 -13.80150 -13.56582 -13.05925 -12.68259 -12.23078 -12.06006 -12.05357 -11.59861 -11.45630 -11.16742 -10.95971 -10.82699 -10.70438 -10.55955 -10.27748 -10.09941 -10.07783 -9.74066 -9.45635 -8.82589 -7.95918 -6.84560 -5.69679 -2.96616 3.46728 3.52374 3.54531 4.46062 4.64864 5.03915 5.22180 5.30702 5.45826 5.52615 5.65007 5.72440 5.77536 5.88898 5.94248 5.97154 6.02181 6.09246 6.12250 6.23781 6.39177 6.41405 6.48473 6.53715 6.56522 6.70623 6.82804 7.01530 7.07285 7.43995 7.56287 7.77045 8.50120 9.61467 10.22590 10.58017 11.53102 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.009933 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.554954 B = 2818.223194 C = 3349.725273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.502 5.502 4 C 0.011 3.989 5 C 0.183 3.817 6 H 0.052 0.948 7 N -0.714 5.714 8 C -0.237 4.237 9 H 0.068 0.932 10 C -0.014 4.014 11 N -0.931 5.931 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.133 4.133 19 C 0.043 3.957 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.023 0.977 27 H 0.391 0.609 28 H 0.253 0.747 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -11.653 0.312 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.226 5.226 4 C -0.120 4.120 5 C 0.071 3.929 6 H 0.070 0.930 7 N -0.357 5.357 8 C -0.369 4.369 9 H 0.086 0.914 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.735 3.265 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.078 4.078 17 C -0.184 4.184 18 C -0.191 4.191 19 C -0.085 4.085 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.229 0.771 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.766 -11.285 -0.002 12.251 hybrid contribution -0.274 0.140 1.018 1.064 sum 4.492 -11.145 1.016 12.059 Atomic orbital electron populations 1.21714 0.95025 1.00593 1.02936 1.22196 0.96351 0.90451 0.99726 1.65379 1.10539 1.14021 1.32681 1.24087 1.03242 0.96687 0.87965 1.20960 0.89731 0.86970 0.95209 0.92984 1.42710 1.60750 1.21514 1.10758 1.19310 1.24181 1.01483 0.91904 0.91392 1.24708 1.01524 0.98588 0.96121 1.69676 1.49097 1.25626 1.13527 0.86165 0.79710 0.80547 0.80065 1.20673 1.22003 1.21995 1.21550 0.95365 0.94393 0.96540 1.21650 1.00994 0.99021 0.96710 1.21829 0.96314 1.01670 0.99252 1.23169 0.88861 0.96179 1.00299 0.92584 0.91851 0.93089 0.95579 0.91624 0.89543 0.95837 0.77079 0.93669 0.91581 0.94288 0.91543 0.93354 0.93218 0.92207 0.94757 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.97 37.16 0.37 -1.64 16 2 C 0.04 0.60 5.53 -3.82 -0.02 0.58 16 3 N -0.50 -8.77 5.37 -229.96 -1.24 -10.01 16 4 C 0.01 0.21 5.45 -2.18 -0.01 0.20 16 5 C 0.18 3.77 3.33 -66.55 -0.22 3.55 16 6 H 0.05 1.09 7.68 -51.93 -0.40 0.69 16 7 N -0.71 -18.08 4.64 -52.09 -0.24 -18.32 16 8 C -0.24 -6.63 9.97 -15.05 -0.15 -6.78 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 12 Si 0.90 22.62 29.55 -169.99 -5.02 17.59 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 C -0.08 -1.33 1.03 -153.13 -0.16 -1.49 16 17 C -0.13 -2.31 7.07 37.16 0.26 -2.04 16 18 C -0.13 -1.94 8.26 37.16 0.31 -1.63 16 19 C 0.04 0.68 5.58 -2.18 -0.01 0.67 16 20 H 0.06 0.83 7.26 -51.93 -0.38 0.46 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.03 0.36 7.88 -51.93 -0.41 -0.05 16 24 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.09 1.89 7.68 -51.93 -0.40 1.49 16 26 H 0.02 0.41 7.82 -51.92 -0.41 0.01 16 27 H 0.39 10.49 4.99 -40.82 -0.20 10.29 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.07 1.34 7.72 -51.93 -0.40 0.93 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.36 7.01 -51.93 -0.36 1.00 16 32 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.49 7.69 -51.93 -0.40 0.09 16 36 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 LS Contribution 282.28 15.07 4.25 4.25 Total: -1.00 -29.65 282.28 -7.52 -37.17 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.27 Total: 5.99 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 0.27 Total: -9.08 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.75 Total: -55.93 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.65 -7.52 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.292 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds