Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.48560 * 111.00129 * 69.87826 * 3 2 1 5 5 C 1.54377 * 104.59882 * 159.03553 * 4 3 2 6 6 H 1.08995 * 110.32807 * 217.14707 * 5 4 3 7 7 N 1.46497 * 110.32066 * 95.04145 * 5 4 3 8 8 C 1.36943 * 119.99871 * 86.45675 * 7 5 4 9 9 H 1.07997 * 120.00139 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99760 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00024 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99692 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47185 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47208 * 120.00132 * 12 10 8 15 15 H 1.48497 * 109.46990 * 240.00174 * 12 10 8 16 16 C 1.54256 * 105.05892 * 336.14816 * 5 4 3 17 17 C 1.53008 * 110.32536 * 118.89389 * 16 5 4 18 18 C 1.52999 * 110.32567 * 240.99771 * 16 5 4 19 19 C 1.48561 * 110.99902 * 185.29195 * 3 2 1 20 20 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 25 25 H 1.09000 * 110.40968 * 277.82278 * 4 3 2 26 26 H 1.09008 * 110.40989 * 40.25837 * 4 3 2 27 27 H 0.96998 * 120.00258 * 266.45308 * 7 5 4 28 28 H 0.97005 * 119.99913 * 179.97438 * 11 10 8 29 29 H 1.09003 * 109.46674 * 59.99917 * 17 16 5 30 30 H 1.08997 * 109.46928 * 180.02562 * 17 16 5 31 31 H 1.08997 * 109.46980 * 299.99845 * 17 16 5 32 32 H 1.09003 * 109.46987 * 60.00075 * 18 16 5 33 33 H 1.09000 * 109.47304 * 179.97438 * 18 16 5 34 34 H 1.09001 * 109.46994 * 300.00324 * 18 16 5 35 35 H 1.09005 * 110.41459 * 319.74535 * 19 3 2 36 36 H 1.09001 * 110.41012 * 82.18114 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7472 2.0460 1.3023 5 6 2.7452 3.2225 1.3578 6 1 3.1143 3.3582 2.3743 7 7 2.1089 4.4525 0.8799 8 6 1.3973 5.2370 1.7479 9 1 1.3055 4.9492 2.7848 10 6 0.7948 6.4028 1.2952 11 7 0.9079 6.7543 0.0319 12 14 -0.1753 7.4734 2.4794 13 1 -0.1510 6.8623 3.8326 14 1 0.4336 8.8266 2.5357 15 1 -1.5803 7.5819 2.0111 16 6 3.8977 2.8150 0.4169 17 6 4.0273 3.8190 -0.7305 18 6 5.2123 2.7257 1.1945 19 6 3.4991 1.4267 -0.1279 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 0.7221 2.4152 1.3341 26 1 1.9288 1.3543 2.1250 27 1 2.1916 4.7112 -0.0512 28 1 0.4865 7.5687 -0.2845 29 1 4.2326 4.8097 -0.3249 30 1 4.8443 3.5179 -1.3861 31 1 3.0970 3.8442 -1.2979 32 1 5.1175 1.9803 1.9841 33 1 6.0162 2.4369 0.5174 34 1 5.4398 3.6959 1.6362 35 1 3.9549 0.6381 0.4709 36 1 3.7932 1.3296 -1.1730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642877415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = -5.931483 kcal Electronic energy + Delta-G solvation = -15091.938874 eV Core-core repulsion = 12803.368740 eV Total energy + Delta-G solvation = -2288.570134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64297 -36.48801 -35.10868 -32.58317 -31.36129 -28.98118 -28.09485 -25.99141 -25.41961 -23.14047 -21.53620 -19.72685 -19.03581 -17.06784 -16.58612 -16.31202 -15.54240 -15.38318 -15.07539 -14.44206 -14.07800 -13.68520 -13.56075 -13.42916 -13.10070 -12.90299 -12.79407 -12.57373 -12.40120 -12.26454 -12.04023 -11.96585 -11.78424 -11.46321 -11.35355 -11.20277 -10.88488 -9.25711 -8.91355 -7.89752 -5.15923 1.46889 1.47670 1.57391 2.58387 3.18820 3.41816 3.69094 3.86931 4.00194 4.22640 4.25457 4.36070 4.52509 4.54638 4.64553 4.67669 4.72309 4.84882 4.91593 4.94727 4.99556 5.05850 5.12376 5.15116 5.23538 5.34986 5.40550 5.50616 5.52560 5.58952 6.06996 6.29704 6.34047 7.39738 8.20555 8.43985 9.34196 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.009933 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.554954 B = 2818.223194 C = 3349.725273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 N -0.525 5.525 4 C 0.024 3.976 5 C 0.170 3.830 6 H 0.047 0.953 7 N -0.726 5.726 8 C -0.235 4.235 9 H 0.071 0.929 10 C -0.077 4.077 11 N -0.969 5.969 12 Si 0.969 3.031 13 H -0.267 1.267 14 H -0.294 1.294 15 H -0.296 1.296 16 C -0.075 4.075 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.050 3.950 20 H 0.038 0.962 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.381 0.619 28 H 0.249 0.751 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.153 -13.643 0.908 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 N -0.250 5.250 4 C -0.107 4.107 5 C 0.060 3.940 6 H 0.065 0.935 7 N -0.369 5.369 8 C -0.367 4.367 9 H 0.089 0.911 10 C -0.269 4.269 11 N -0.620 5.620 12 Si 0.799 3.201 13 H -0.192 1.192 14 H -0.221 1.221 15 H -0.224 1.224 16 C -0.076 4.076 17 C -0.175 4.175 18 C -0.184 4.184 19 C -0.078 4.078 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.217 0.783 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.806 -13.326 0.625 14.549 hybrid contribution -0.561 0.671 0.822 1.201 sum 5.244 -12.654 1.447 13.774 Atomic orbital electron populations 1.21705 0.95095 1.01961 1.01277 1.22287 0.96326 0.88857 1.01251 1.65324 1.12041 1.16146 1.31482 1.23725 1.00547 0.96561 0.89856 1.21248 0.91217 0.85746 0.95743 0.93469 1.42882 1.60953 1.23018 1.10004 1.19674 1.23215 1.01479 0.92364 0.91061 1.25489 1.03416 1.00298 0.97715 1.69836 1.50732 1.26072 1.15351 0.85132 0.77760 0.78570 0.78679 1.19151 1.22147 1.22398 1.21551 0.95442 0.94986 0.95600 1.21529 1.00536 0.98111 0.97288 1.21778 0.95304 1.01556 0.99811 1.23172 0.87752 0.95478 1.01402 0.94325 0.93423 0.90198 0.94181 0.89700 0.93094 0.93925 0.78293 0.94255 0.94429 0.91092 0.94503 0.91820 0.90647 0.93557 0.92277 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.97 71.98 0.72 -3.03 16 2 C 0.04 1.06 5.53 86.30 0.48 1.54 16 3 N -0.53 -17.45 5.37 -881.47 -4.73 -22.18 16 4 C 0.02 0.90 5.45 86.45 0.47 1.37 16 5 C 0.17 6.97 3.33 45.89 0.15 7.12 16 6 H 0.05 1.95 7.68 -2.39 -0.02 1.93 16 7 N -0.73 -37.66 4.64 -318.72 -1.48 -39.14 16 8 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 9 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 10 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 11 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 12 Si 0.97 47.35 29.55 68.60 2.03 49.37 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 16 C -0.07 -2.44 1.03 -51.29 -0.05 -2.50 16 17 C -0.12 -4.23 7.07 71.98 0.51 -3.72 16 18 C -0.13 -3.34 8.26 71.98 0.59 -2.74 16 19 C 0.05 1.41 5.58 86.45 0.48 1.89 16 20 H 0.04 1.12 7.26 -2.39 -0.02 1.11 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 0.95 7.88 -2.39 -0.02 0.93 16 24 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 25 H 0.05 2.27 7.68 -2.39 -0.02 2.25 16 26 H 0.04 1.42 7.82 -2.38 -0.02 1.40 16 27 H 0.38 21.20 4.99 -92.71 -0.46 20.74 16 28 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.04 1.54 7.72 -2.39 -0.02 1.52 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.53 7.01 -2.39 -0.02 1.51 16 32 H 0.06 1.48 8.10 -2.39 -0.02 1.47 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.41 7.69 -2.38 -0.02 1.40 16 36 H 0.08 2.23 7.86 -2.39 -0.02 2.21 16 Total: -1.00 -64.95 282.28 1.32 -63.64 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.57 Total: 25.48 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.66 Total: -16.66 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -5.93 Total: -121.82 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -64.95 1.32 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642877415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds