Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47198 * 2 1 4 4 C 1.50700 * 109.46573 * 240.00519 * 2 1 3 5 5 H 1.08007 * 119.99559 * 239.99694 * 4 2 1 6 6 C 1.37877 * 120.00733 * 59.99933 * 4 2 1 7 7 N 1.31515 * 120.00399 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99487 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47168 * 269.99714 * 8 6 4 10 10 H 1.48501 * 109.47235 * 29.99748 * 8 6 4 11 11 H 1.48505 * 109.47218 * 149.99649 * 8 6 4 12 12 N 1.46898 * 109.47092 * 120.00391 * 2 1 3 13 13 C 1.46896 * 110.99800 * 178.26618 * 12 2 1 14 14 C 1.46896 * 110.99915 * 302.22442 * 12 2 1 15 15 H 1.08996 * 109.47633 * 50.07924 * 14 12 2 16 16 C 1.53005 * 109.47074 * 170.08137 * 14 12 2 17 17 C 1.53003 * 109.46949 * 290.08084 * 14 12 2 18 18 C 1.53938 * 113.73329 * 271.39549 * 17 14 12 19 19 N 1.47958 * 86.17809 * 221.92232 * 18 17 14 20 20 C 1.47955 * 90.76685 * 24.69095 * 19 18 17 21 21 H 1.08995 * 109.47284 * 186.65571 * 1 2 3 22 22 H 1.09001 * 109.47097 * 306.65410 * 1 2 3 23 23 H 1.09004 * 109.47236 * 66.65296 * 1 2 3 24 24 H 0.96997 * 119.99854 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46886 * 56.72870 * 13 12 2 26 26 H 1.09000 * 109.47052 * 176.72636 * 13 12 2 27 27 H 1.08995 * 109.47213 * 296.72807 * 13 12 2 28 28 H 1.09004 * 109.46721 * 53.43369 * 16 14 12 29 29 H 1.08999 * 109.46829 * 173.42892 * 16 14 12 30 30 H 1.09002 * 109.47197 * 293.43544 * 16 14 12 31 31 H 1.09002 * 112.93823 * 43.10146 * 17 14 12 32 32 H 1.09001 * 113.75966 * 336.23880 * 18 17 14 33 33 H 1.08996 * 113.75887 * 107.60065 * 18 17 14 34 34 H 1.00896 * 111.00104 * 271.79141 * 19 18 17 35 35 H 1.09000 * 113.75785 * 220.99684 * 20 19 18 36 36 H 1.08996 * 113.85997 * 89.64159 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 2.1379 -0.8589 -3.5567 8 14 0.6258 1.2800 -2.6541 9 1 -0.8021 0.8747 -2.6992 10 1 0.8492 2.1774 -1.4922 11 1 0.9772 1.9956 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 3.4875 -0.7482 1.2127 14 6 1.5057 -0.0580 2.4204 15 1 0.4259 0.0664 2.3385 16 6 1.8273 -0.9406 3.6281 17 6 2.1645 1.3113 2.5996 18 6 3.4851 1.2649 3.3892 19 7 3.0045 2.4859 4.0726 20 6 1.6007 2.1202 3.7818 21 1 -0.3633 -1.0207 0.1191 22 1 -0.3633 0.6135 0.8245 23 1 -0.3634 0.4073 -0.9435 24 1 1.9032 -0.5277 -4.4376 25 1 3.8900 0.2627 1.1469 26 1 3.8251 -1.2141 2.1385 27 1 3.8366 -1.3343 0.3627 28 1 2.8947 -1.1609 3.6431 29 1 1.5512 -0.4180 4.5439 30 1 1.2651 -1.8718 3.5575 31 1 2.2266 1.8777 1.6704 32 1 3.5737 0.3998 4.0463 33 1 4.3705 1.4255 2.7740 34 1 3.2749 3.3148 3.5648 35 1 0.9804 2.9642 3.4802 36 1 1.1364 1.5054 4.5528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686258063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = 55.413528 kcal Electronic energy + Delta-G solvation = -15332.752769 eV Core-core repulsion = 13046.842754 eV Total energy + Delta-G solvation = -2285.910015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17510 -36.82709 -33.08135 -31.07088 -29.51530 -26.54641 -25.92583 -25.41568 -24.32385 -21.66788 -20.07457 -18.20102 -16.93209 -16.46179 -15.50728 -14.95045 -14.77879 -13.73248 -13.49583 -13.28698 -12.91922 -12.54532 -12.21530 -12.07058 -11.95879 -11.55985 -11.34101 -11.17921 -10.81273 -10.66667 -10.54294 -10.35386 -10.15113 -10.04272 -9.49317 -9.07282 -8.59879 -8.45191 -7.22257 -6.08797 -4.06934 3.23064 3.32294 3.35166 4.13209 4.36703 4.54070 4.87192 4.99057 5.22324 5.40183 5.47239 5.58901 5.65207 5.74178 5.80402 5.93262 6.02860 6.06359 6.19982 6.25898 6.27998 6.35782 6.37589 6.49609 6.57874 6.62905 6.80316 6.90516 7.26383 7.33431 7.59803 7.96436 8.10806 8.65269 8.98658 9.53363 11.04085 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.010001 C = 0.009337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.744185 B = 2799.006468 C = 2997.961534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.003 1.003 4 C -0.504 4.504 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.298 1.298 12 N -0.519 5.519 13 C 0.036 3.964 14 C 0.080 3.920 15 H 0.082 0.918 16 C -0.143 4.143 17 C -0.187 4.187 18 C 0.018 3.982 19 N -0.664 5.664 20 C 0.021 3.979 21 H 0.060 0.940 22 H 0.026 0.974 23 H 0.043 0.957 24 H 0.264 0.736 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.332 0.668 35 H 0.065 0.935 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 4.526 12.595 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.225 1.225 12 N -0.241 5.241 13 C -0.113 4.113 14 C -0.030 4.030 15 H 0.100 0.900 16 C -0.200 4.200 17 C -0.208 4.208 18 C -0.111 4.111 19 N -0.290 5.290 20 C -0.110 4.110 21 H 0.079 0.921 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.685 3.925 13.212 13.800 hybrid contribution -0.532 1.845 -1.436 2.398 sum -1.217 5.770 11.776 13.170 Atomic orbital electron populations 1.22220 0.98759 1.01020 0.98420 1.19674 0.91249 0.92581 0.89006 0.98596 1.20997 1.31784 1.13511 0.87914 0.89979 1.24939 0.95890 0.96586 0.95865 1.69879 1.45760 1.40295 0.97858 0.86882 0.80806 0.83808 0.76761 1.20535 1.19632 1.22537 1.62157 1.08641 1.52313 1.01036 1.22297 0.88402 0.99373 1.01183 1.21746 0.99593 0.90073 0.91594 0.90050 1.21946 1.01820 0.99789 0.96455 1.24846 0.97136 0.99932 0.98868 1.23941 0.96577 0.94807 0.95782 1.65092 1.05816 1.04322 1.53789 1.23660 0.91939 0.98795 0.96603 0.92081 0.95466 0.93885 0.92646 0.96628 0.93295 0.90597 0.92272 0.92919 0.92241 0.89072 0.87817 0.91379 0.85443 0.91611 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.19 37.16 0.30 -2.90 16 2 C 0.18 4.25 1.44 -68.86 -0.10 4.15 16 3 H 0.00 -0.08 5.60 -51.93 -0.29 -0.37 16 4 C -0.50 -13.98 8.55 -34.44 -0.29 -14.27 16 5 H 0.08 2.48 6.80 -52.48 -0.36 2.12 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 8 Si 0.89 21.94 24.42 -169.99 -4.15 17.79 16 9 H -0.28 -6.72 6.82 56.52 0.39 -6.34 16 10 H -0.27 -6.45 6.53 56.52 0.37 -6.09 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 N -0.52 -10.40 4.57 -228.30 -1.04 -11.44 16 13 C 0.04 0.67 7.78 60.06 0.47 1.14 16 14 C 0.08 1.30 2.30 -67.71 -0.16 1.14 16 15 H 0.08 1.36 5.90 -51.93 -0.31 1.05 16 16 C -0.14 -1.95 7.92 37.16 0.29 -1.65 16 17 C -0.19 -2.79 2.87 -89.68 -0.26 -3.05 16 18 C 0.02 0.25 6.44 -2.77 -0.02 0.23 16 19 N -0.66 -8.62 8.55 -117.04 -1.00 -9.62 16 20 C 0.02 0.26 8.26 -2.77 -0.02 0.24 16 21 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 23 H 0.04 0.99 3.22 -51.93 -0.17 0.82 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.29 6.06 -51.93 -0.31 -0.03 16 26 H 0.05 0.78 5.95 -51.93 -0.31 0.47 16 27 H 0.08 1.61 6.48 -51.93 -0.34 1.27 16 28 H 0.06 0.79 4.66 -51.93 -0.24 0.55 16 29 H 0.05 0.63 6.59 -51.93 -0.34 0.28 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.59 6.50 -51.93 -0.34 1.25 16 32 H 0.10 1.35 5.53 -51.93 -0.29 1.06 16 33 H 0.07 0.92 7.39 -51.93 -0.38 0.54 16 34 H 0.33 3.98 8.89 -39.29 -0.35 3.63 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.16 6.72 -51.93 -0.35 0.81 16 LS Contribution 256.72 15.07 3.87 3.87 Total: -1.00 -29.40 256.72 -6.60 -35.99 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.16 Total: 3.10 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 0.12 Total: -13.11 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -1.27 Total: -47.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.40 -6.60 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds