Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47198 * 2 1 4 4 C 1.50700 * 109.46573 * 240.00519 * 2 1 3 5 5 H 1.08007 * 119.99559 * 239.99694 * 4 2 1 6 6 C 1.37877 * 120.00733 * 59.99933 * 4 2 1 7 7 N 1.31515 * 120.00399 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99487 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47168 * 269.99714 * 8 6 4 10 10 H 1.48501 * 109.47235 * 29.99748 * 8 6 4 11 11 H 1.48505 * 109.47218 * 149.99649 * 8 6 4 12 12 N 1.46898 * 109.47092 * 120.00391 * 2 1 3 13 13 C 1.46896 * 110.99800 * 178.26618 * 12 2 1 14 14 C 1.46896 * 110.99915 * 302.22442 * 12 2 1 15 15 H 1.08996 * 109.47633 * 50.07924 * 14 12 2 16 16 C 1.53005 * 109.47074 * 170.08137 * 14 12 2 17 17 C 1.53003 * 109.46949 * 290.08084 * 14 12 2 18 18 C 1.53938 * 113.73329 * 271.39549 * 17 14 12 19 19 N 1.47958 * 86.17809 * 221.92232 * 18 17 14 20 20 C 1.47955 * 90.76685 * 24.69095 * 19 18 17 21 21 H 1.08995 * 109.47284 * 186.65571 * 1 2 3 22 22 H 1.09001 * 109.47097 * 306.65410 * 1 2 3 23 23 H 1.09004 * 109.47236 * 66.65296 * 1 2 3 24 24 H 0.96997 * 119.99854 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46886 * 56.72870 * 13 12 2 26 26 H 1.09000 * 109.47052 * 176.72636 * 13 12 2 27 27 H 1.08995 * 109.47213 * 296.72807 * 13 12 2 28 28 H 1.09004 * 109.46721 * 53.43369 * 16 14 12 29 29 H 1.08999 * 109.46829 * 173.42892 * 16 14 12 30 30 H 1.09002 * 109.47197 * 293.43544 * 16 14 12 31 31 H 1.09002 * 112.93823 * 43.10146 * 17 14 12 32 32 H 1.09001 * 113.75966 * 336.23880 * 18 17 14 33 33 H 1.08996 * 113.75887 * 107.60065 * 18 17 14 34 34 H 1.00896 * 111.00104 * 271.79141 * 19 18 17 35 35 H 1.09000 * 113.75785 * 220.99684 * 20 19 18 36 36 H 1.08996 * 113.85997 * 89.64159 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 2.1379 -0.8589 -3.5567 8 14 0.6258 1.2800 -2.6541 9 1 -0.8021 0.8747 -2.6992 10 1 0.8492 2.1774 -1.4922 11 1 0.9772 1.9956 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 3.4875 -0.7482 1.2127 14 6 1.5057 -0.0580 2.4204 15 1 0.4259 0.0664 2.3385 16 6 1.8273 -0.9406 3.6281 17 6 2.1645 1.3113 2.5996 18 6 3.4851 1.2649 3.3892 19 7 3.0045 2.4859 4.0726 20 6 1.6007 2.1202 3.7818 21 1 -0.3633 -1.0207 0.1191 22 1 -0.3633 0.6135 0.8245 23 1 -0.3634 0.4073 -0.9435 24 1 1.9032 -0.5277 -4.4376 25 1 3.8900 0.2627 1.1469 26 1 3.8251 -1.2141 2.1385 27 1 3.8366 -1.3343 0.3627 28 1 2.8947 -1.1609 3.6431 29 1 1.5512 -0.4180 4.5439 30 1 1.2651 -1.8718 3.5575 31 1 2.2266 1.8777 1.6704 32 1 3.5737 0.3998 4.0463 33 1 4.3705 1.4255 2.7740 34 1 3.2749 3.3148 3.5648 35 1 0.9804 2.9642 3.4802 36 1 1.1364 1.5054 4.5528 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686258063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = 31.278418 kcal Electronic energy + Delta-G solvation = -15333.799345 eV Core-core repulsion = 13046.842754 eV Total energy + Delta-G solvation = -2286.956592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.36478 -38.31612 -34.98781 -32.83322 -31.03231 -27.79683 -27.26586 -26.92136 -25.89338 -23.17180 -21.56292 -19.55219 -18.85407 -17.63853 -17.21931 -16.45086 -16.20230 -15.32251 -15.09859 -14.62646 -14.49581 -14.12960 -13.75208 -13.50266 -13.31857 -12.96065 -12.72636 -12.59385 -12.42206 -12.17900 -12.06749 -11.88199 -11.74663 -11.42611 -11.37072 -10.95322 -10.74492 -9.60511 -8.74226 -8.29677 -6.32134 1.26661 1.30972 1.41169 2.28839 3.03409 3.08712 3.24601 3.61697 3.84724 4.19244 4.34286 4.42422 4.48133 4.53489 4.56610 4.64135 4.70385 4.74321 4.83401 4.86419 4.91438 4.98637 5.03917 5.08472 5.21681 5.24053 5.32360 5.40752 5.54610 5.66179 6.06087 6.34005 6.44614 6.74157 6.78084 7.32669 8.86808 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.010001 C = 0.009337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.744185 B = 2799.006468 C = 2997.961534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.188 3.812 3 H -0.011 1.011 4 C -0.505 4.505 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.265 1.265 10 H -0.254 1.254 11 H -0.300 1.300 12 N -0.532 5.532 13 C 0.043 3.957 14 C 0.079 3.921 15 H 0.080 0.920 16 C -0.136 4.136 17 C -0.190 4.190 18 C 0.023 3.977 19 N -0.665 5.665 20 C 0.031 3.969 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.032 0.968 24 H 0.265 0.735 25 H 0.016 0.984 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.337 0.663 35 H 0.075 0.925 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 5.945 15.004 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.080 3.920 3 H 0.006 0.994 4 C -0.544 4.544 5 H 0.059 0.941 6 C -0.187 4.187 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.191 1.191 10 H -0.178 1.178 11 H -0.228 1.228 12 N -0.256 5.256 13 C -0.105 4.105 14 C -0.031 4.031 15 H 0.098 0.902 16 C -0.193 4.193 17 C -0.212 4.212 18 C -0.107 4.107 19 N -0.291 5.291 20 C -0.099 4.099 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.819 5.347 15.658 16.646 hybrid contribution -0.105 1.326 -2.133 2.514 sum -1.923 6.673 13.525 15.204 Atomic orbital electron populations 1.22119 0.97171 1.01504 0.99194 1.19459 0.92370 0.91564 0.88652 0.99375 1.21278 1.30665 1.12254 0.90157 0.94147 1.25783 0.97505 0.99914 0.95464 1.70036 1.47877 1.42534 0.98509 0.85849 0.79381 0.80038 0.77031 1.19099 1.17808 1.22761 1.62075 1.09131 1.52820 1.01542 1.22198 0.88068 0.99022 1.01187 1.21866 0.99431 0.91192 0.90570 0.90150 1.21900 1.01958 0.99385 0.96045 1.24793 0.98562 0.99064 0.98740 1.23939 0.95661 0.95505 0.95561 1.65114 1.06005 1.04303 1.53672 1.23695 0.91961 0.98777 0.95482 0.92444 0.92075 0.94934 0.92612 0.96565 0.90173 0.94211 0.92025 0.90434 0.92508 0.91739 0.86839 0.91898 0.84897 0.90646 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 8.19 71.98 0.59 -5.36 16 2 C 0.19 8.66 1.44 44.17 0.06 8.72 16 3 H -0.01 -0.53 5.60 -2.39 -0.01 -0.54 16 4 C -0.51 -28.82 8.55 25.60 0.22 -28.60 16 5 H 0.04 2.58 6.80 -2.91 -0.02 2.56 16 6 C 0.01 0.60 5.45 84.65 0.46 1.06 16 7 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 8 Si 0.95 45.21 24.42 68.60 1.68 46.89 16 9 H -0.26 -11.98 6.82 99.48 0.68 -11.30 16 10 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 12 N -0.53 -20.92 4.57 -876.22 -4.01 -24.92 16 13 C 0.04 1.63 7.78 127.69 0.99 2.62 16 14 C 0.08 2.34 2.30 44.92 0.10 2.45 16 15 H 0.08 2.42 5.90 -2.39 -0.01 2.40 16 16 C -0.14 -3.24 7.92 71.98 0.57 -2.67 16 17 C -0.19 -5.19 2.87 -10.14 -0.03 -5.22 16 18 C 0.02 0.55 6.44 86.41 0.56 1.11 16 19 N -0.66 -15.13 8.55 -524.21 -4.48 -19.61 16 20 C 0.03 0.68 8.26 86.41 0.71 1.39 16 21 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 22 H 0.06 2.12 6.54 -2.39 -0.02 2.10 16 23 H 0.03 1.42 3.22 -2.39 -0.01 1.41 16 24 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.02 0.59 6.06 -2.39 -0.01 0.58 16 26 H 0.08 2.45 5.95 -2.39 -0.01 2.44 16 27 H 0.04 1.75 6.48 -2.39 -0.02 1.74 16 28 H 0.06 1.44 4.66 -2.38 -0.01 1.43 16 29 H 0.08 1.49 6.59 -2.39 -0.02 1.48 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 2.13 6.50 -2.39 -0.02 2.12 16 32 H 0.11 2.55 5.53 -2.39 -0.01 2.54 16 33 H 0.06 1.59 7.39 -2.39 -0.02 1.57 16 34 H 0.34 7.17 8.89 -89.70 -0.80 6.37 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 2.13 6.72 -2.39 -0.02 2.12 16 Total: -1.00 -64.48 256.72 -2.07 -66.55 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.20 Total: 14.94 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.24 Total: -24.51 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -8.19 Total: -103.87 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.68 Total: 46.89 kcal Total: -64.48 -2.07 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.829 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds