Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46937 * 2 1 4 4 C 1.53000 * 109.46990 * 240.00145 * 2 1 3 5 5 C 1.53927 * 113.83364 * 329.16960 * 4 2 1 6 6 N 1.47956 * 86.18239 * 138.09165 * 5 4 2 7 7 C 1.47956 * 90.76358 * 335.31373 * 6 5 4 8 8 N 1.46893 * 109.47288 * 119.99633 * 2 1 3 9 9 C 1.46899 * 110.99850 * 64.60609 * 8 2 1 10 10 C 1.46899 * 111.00382 * 188.55873 * 8 2 1 11 11 H 1.09001 * 109.46869 * 299.88568 * 10 8 2 12 12 C 1.53000 * 109.46802 * 59.88388 * 10 8 2 13 13 C 1.50697 * 109.47373 * 179.88392 * 10 8 2 14 14 H 1.07995 * 120.00170 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99882 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00275 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00054 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47133 * 120.00231 * 17 15 13 20 20 H 1.48498 * 109.46953 * 240.00355 * 17 15 13 21 21 H 1.08999 * 109.46821 * 186.27845 * 1 2 3 22 22 H 1.09000 * 109.47090 * 306.27804 * 1 2 3 23 23 H 1.09003 * 109.47157 * 66.28357 * 1 2 3 24 24 H 1.09001 * 112.93193 * 197.51191 * 4 2 1 25 25 H 1.08996 * 113.76067 * 252.41409 * 5 4 2 26 26 H 1.09010 * 113.75641 * 23.77398 * 5 4 2 27 27 H 1.00902 * 111.00311 * 222.41662 * 6 5 4 28 28 H 1.09006 * 113.75813 * 270.37175 * 7 6 5 29 29 H 1.09003 * 113.76252 * 139.00989 * 7 6 5 30 30 H 1.09005 * 109.47177 * 59.99880 * 9 8 2 31 31 H 1.09002 * 109.47559 * 180.02562 * 9 8 2 32 32 H 1.09004 * 109.47453 * 300.00080 * 9 8 2 33 33 H 1.09002 * 109.47403 * 181.11700 * 12 10 8 34 34 H 1.09002 * 109.46954 * 301.10909 * 12 10 8 35 35 H 1.08992 * 109.47589 * 61.11476 * 12 10 8 36 36 H 0.96992 * 120.00254 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.1074 -1.8408 -1.7454 6 7 1.3850 -1.3333 -3.1071 7 6 1.7051 0.0054 -2.5643 8 7 2.0197 -0.6924 1.1994 9 6 1.6407 -2.1115 1.1796 10 6 3.4738 -0.5378 1.3398 11 1 3.9702 -0.9613 0.4667 12 6 3.8201 0.9482 1.4526 13 6 3.9381 -1.2573 2.5799 14 1 3.2244 -1.7777 3.2014 15 6 5.2741 -1.2520 2.9205 16 7 6.1433 -0.6186 2.1635 17 14 5.8497 -2.1444 4.4573 18 1 4.6847 -2.7727 5.1304 19 1 6.8307 -3.1941 4.0819 20 1 6.4912 -1.1751 5.3815 21 1 -0.3633 -1.0215 0.1124 22 1 -0.3633 0.6081 0.8285 23 1 -0.3633 0.4133 -0.9409 24 1 3.0842 -1.0235 -1.1687 25 1 1.4913 -2.8447 -1.5641 26 1 0.0699 -1.7184 -1.4340 27 1 0.5426 -1.3066 -3.6619 28 1 0.8424 0.6679 -2.4926 29 1 2.5666 0.4767 -3.0375 30 1 2.0706 -2.5902 0.2997 31 1 2.0153 -2.6003 2.0790 32 1 0.5546 -2.1971 1.1456 33 1 4.9006 1.0642 1.5369 34 1 3.4667 1.4720 0.5644 35 1 3.3397 1.3672 2.3367 36 1 7.0832 -0.6152 2.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686258064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = 44.876367 kcal Electronic energy + Delta-G solvation = -15250.449713 eV Core-core repulsion = 12964.082772 eV Total energy + Delta-G solvation = -2286.366940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95753 -36.56010 -33.07980 -30.60602 -28.92596 -26.67904 -25.90120 -25.39247 -24.13268 -21.52091 -19.74359 -18.08305 -16.48348 -16.07721 -15.46947 -15.35652 -14.33795 -13.55740 -13.35132 -13.17084 -12.76068 -12.37176 -11.95770 -11.80456 -11.52579 -11.21431 -10.99827 -10.92781 -10.72595 -10.57973 -10.48375 -10.02401 -9.93061 -9.91231 -9.57544 -8.82567 -8.75235 -8.38694 -7.04322 -5.98555 -4.02465 3.30942 3.38854 3.43051 4.30899 4.42533 4.77083 5.06010 5.12661 5.33224 5.42786 5.56293 5.63703 5.77456 5.92400 5.95085 6.00953 6.08468 6.22896 6.32582 6.36820 6.55034 6.56152 6.66655 6.85419 6.91803 7.10441 7.21197 7.39179 7.58114 7.78781 7.86383 8.25561 8.36841 8.65739 9.04608 9.62346 11.08285 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044615 B = 0.008598 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.447982 B = 3255.670417 C = 3323.184199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.084 0.916 4 C -0.140 4.140 5 C 0.005 3.995 6 N -0.638 5.638 7 C 0.007 3.993 8 N -0.528 5.528 9 C 0.031 3.969 10 C 0.210 3.790 11 H 0.002 0.998 12 C -0.133 4.133 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.308 0.692 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.008 0.992 35 H 0.033 0.967 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 0.557 -6.170 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.102 0.898 4 C -0.160 4.160 5 C -0.125 4.125 6 N -0.262 5.262 7 C -0.123 4.123 8 N -0.252 5.252 9 C -0.118 4.118 10 C 0.104 3.896 11 H 0.020 0.980 12 C -0.191 4.191 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.802 0.450 -6.008 10.667 hybrid contribution -0.032 -0.413 0.348 0.541 sum -8.834 0.037 -5.660 10.492 Atomic orbital electron populations 1.21969 0.96051 1.01639 1.00457 1.21729 0.94154 0.99045 0.88007 0.89812 1.23691 1.01356 0.96053 0.94899 1.24009 0.99242 0.99942 0.89298 1.66920 1.34833 1.12967 1.11472 1.23737 1.00802 0.92096 0.95704 1.62327 1.17549 1.11337 1.33953 1.22330 0.98074 0.90163 1.01185 1.19249 0.80575 0.93619 0.96112 0.98037 1.21847 1.03566 0.96768 0.96892 1.21211 0.92436 1.31847 1.08583 0.91882 1.24933 0.96786 0.95680 0.96902 1.69903 1.02328 1.42887 1.38111 0.86492 0.78637 0.79417 0.83166 1.19792 1.21198 1.21081 0.92445 0.92283 0.93643 0.87952 0.89982 0.91045 0.87990 0.91794 0.89997 0.96346 0.90835 0.93933 0.89817 0.97295 0.94796 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.88 37.16 0.29 -1.76 16 2 C 0.08 1.41 2.32 -67.72 -0.16 1.25 16 3 H 0.08 1.55 5.86 -51.92 -0.30 1.24 16 4 C -0.14 -2.34 2.89 -89.69 -0.26 -2.60 16 5 C 0.00 0.07 6.51 -2.77 -0.02 0.05 16 6 N -0.64 -9.02 8.53 -117.04 -1.00 -10.02 16 7 C 0.01 0.11 8.26 -2.77 -0.02 0.08 16 8 N -0.53 -11.13 4.58 -228.29 -1.05 -12.18 16 9 C 0.03 0.60 8.09 60.06 0.49 1.09 16 10 C 0.21 5.25 1.87 -68.87 -0.13 5.12 16 11 H 0.00 0.06 6.40 -51.93 -0.33 -0.27 16 12 C -0.13 -3.24 8.77 37.16 0.33 -2.91 16 13 C -0.50 -13.72 7.88 -34.44 -0.27 -13.99 16 14 H 0.06 1.73 6.41 -52.49 -0.34 1.39 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.54 11.33 55.43 0.63 -24.91 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.06 0.80 4.74 -51.93 -0.25 0.55 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.56 6.63 -51.93 -0.34 0.21 16 24 H 0.10 2.09 6.38 -51.93 -0.33 1.76 16 25 H 0.08 1.27 7.27 -51.93 -0.38 0.90 16 26 H 0.07 0.93 5.53 -51.92 -0.29 0.65 16 27 H 0.31 3.61 8.91 -39.29 -0.35 3.26 16 28 H 0.06 0.79 6.77 -51.93 -0.35 0.44 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.35 5.44 -51.93 -0.28 0.07 16 31 H 0.07 1.56 6.11 -51.93 -0.32 1.24 16 32 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 33 H 0.08 2.24 6.10 -51.93 -0.32 1.93 16 34 H 0.01 0.18 6.17 -51.93 -0.32 -0.14 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -28.31 262.83 -7.55 -35.87 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.23 Total: 3.04 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 0.15 Total: -12.17 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.42 Total: -47.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.31 -7.55 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.743 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds