Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.46937 * 2 1 4 4 C 1.53000 * 109.46990 * 240.00145 * 2 1 3 5 5 C 1.53927 * 113.83364 * 329.16960 * 4 2 1 6 6 N 1.47956 * 86.18239 * 138.09165 * 5 4 2 7 7 C 1.47956 * 90.76358 * 335.31373 * 6 5 4 8 8 N 1.46893 * 109.47288 * 119.99633 * 2 1 3 9 9 C 1.46899 * 110.99850 * 64.60609 * 8 2 1 10 10 C 1.46899 * 111.00382 * 188.55873 * 8 2 1 11 11 H 1.09001 * 109.46869 * 299.88568 * 10 8 2 12 12 C 1.53000 * 109.46802 * 59.88388 * 10 8 2 13 13 C 1.50697 * 109.47373 * 179.88392 * 10 8 2 14 14 H 1.07995 * 120.00170 * 0.02562 * 13 10 8 15 15 C 1.37878 * 119.99882 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00275 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00054 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46896 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47133 * 120.00231 * 17 15 13 20 20 H 1.48498 * 109.46953 * 240.00355 * 17 15 13 21 21 H 1.08999 * 109.46821 * 186.27845 * 1 2 3 22 22 H 1.09000 * 109.47090 * 306.27804 * 1 2 3 23 23 H 1.09003 * 109.47157 * 66.28357 * 1 2 3 24 24 H 1.09001 * 112.93193 * 197.51191 * 4 2 1 25 25 H 1.08996 * 113.76067 * 252.41409 * 5 4 2 26 26 H 1.09010 * 113.75641 * 23.77398 * 5 4 2 27 27 H 1.00902 * 111.00311 * 222.41662 * 6 5 4 28 28 H 1.09006 * 113.75813 * 270.37175 * 7 6 5 29 29 H 1.09003 * 113.76252 * 139.00989 * 7 6 5 30 30 H 1.09005 * 109.47177 * 59.99880 * 9 8 2 31 31 H 1.09002 * 109.47559 * 180.02562 * 9 8 2 32 32 H 1.09004 * 109.47453 * 300.00080 * 9 8 2 33 33 H 1.09002 * 109.47403 * 181.11700 * 12 10 8 34 34 H 1.09002 * 109.46954 * 301.10909 * 12 10 8 35 35 H 1.08992 * 109.47589 * 61.11476 * 12 10 8 36 36 H 0.96992 * 120.00254 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.1074 -1.8408 -1.7454 6 7 1.3850 -1.3333 -3.1071 7 6 1.7051 0.0054 -2.5643 8 7 2.0197 -0.6924 1.1994 9 6 1.6407 -2.1115 1.1796 10 6 3.4738 -0.5378 1.3398 11 1 3.9702 -0.9613 0.4667 12 6 3.8201 0.9482 1.4526 13 6 3.9381 -1.2573 2.5799 14 1 3.2244 -1.7777 3.2014 15 6 5.2741 -1.2520 2.9205 16 7 6.1433 -0.6186 2.1635 17 14 5.8497 -2.1444 4.4573 18 1 4.6847 -2.7727 5.1304 19 1 6.8307 -3.1941 4.0819 20 1 6.4912 -1.1751 5.3815 21 1 -0.3633 -1.0215 0.1124 22 1 -0.3633 0.6081 0.8285 23 1 -0.3633 0.4133 -0.9409 24 1 3.0842 -1.0235 -1.1687 25 1 1.4913 -2.8447 -1.5641 26 1 0.0699 -1.7184 -1.4340 27 1 0.5426 -1.3066 -3.6619 28 1 0.8424 0.6679 -2.4926 29 1 2.5666 0.4767 -3.0375 30 1 2.0706 -2.5902 0.2997 31 1 2.0153 -2.6003 2.0790 32 1 0.5546 -2.1971 1.1456 33 1 4.9006 1.0642 1.5369 34 1 3.4667 1.4720 0.5644 35 1 3.3397 1.3672 2.3367 36 1 7.0832 -0.6152 2.4029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686258064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = 23.176611 kcal Electronic energy + Delta-G solvation = -15251.390685 eV Core-core repulsion = 12964.082772 eV Total energy + Delta-G solvation = -2287.307912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26316 -38.14414 -35.00099 -32.26812 -30.66612 -27.92507 -27.46054 -26.99253 -25.78103 -23.15812 -21.35008 -19.41836 -18.41751 -17.38851 -17.17834 -16.83661 -16.07068 -15.20463 -14.95121 -14.66334 -14.10286 -13.81835 -13.59627 -13.17028 -13.06346 -12.93834 -12.73287 -12.58698 -12.29652 -12.27446 -11.95639 -11.93072 -11.75351 -11.46503 -11.11128 -10.74426 -10.48278 -9.87046 -8.74326 -8.09983 -6.21072 1.40136 1.41945 1.53563 2.42481 3.14173 3.18527 3.40516 3.71261 3.84467 4.23042 4.33947 4.43919 4.51317 4.61539 4.69108 4.76218 4.82145 4.86526 4.94255 5.04673 5.06576 5.10400 5.19372 5.19960 5.24188 5.35613 5.46601 5.58354 5.77390 5.86497 6.29470 6.41087 6.47317 6.84202 6.96197 7.48031 8.96004 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044615 B = 0.008598 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.447982 B = 3255.670417 C = 3323.184199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.071 0.929 4 C -0.149 4.149 5 C 0.016 3.984 6 N -0.649 5.649 7 C 0.019 3.981 8 N -0.536 5.536 9 C 0.037 3.963 10 C 0.217 3.783 11 H -0.034 1.034 12 C -0.120 4.120 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.921 5.921 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.280 1.280 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.328 0.672 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.014 0.986 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 0.528 -6.472 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.169 4.169 5 C -0.114 4.114 6 N -0.275 5.275 7 C -0.111 4.111 8 N -0.259 5.259 9 C -0.112 4.112 10 C 0.110 3.890 11 H -0.016 1.016 12 C -0.178 4.178 13 C -0.556 4.556 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.561 5.561 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.206 1.206 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.908 0.420 -6.322 12.615 hybrid contribution 0.595 -0.393 0.383 0.810 sum -10.314 0.027 -5.939 11.901 Atomic orbital electron populations 1.21907 0.92736 1.02411 1.02137 1.21816 0.96564 0.97792 0.86830 0.91062 1.23522 0.99214 0.98062 0.96112 1.23952 0.99777 0.98339 0.89304 1.66837 1.36260 1.12903 1.11506 1.23718 1.01658 0.92374 0.93396 1.62265 1.14696 1.12519 1.36461 1.22287 0.99971 0.89073 0.99829 1.18984 0.82996 0.93201 0.93780 1.01647 1.21654 1.01648 0.96903 0.97635 1.21519 0.92706 1.32032 1.09319 0.92322 1.25722 0.96993 0.96472 0.99794 1.70036 1.02516 1.43948 1.39635 0.85503 0.78176 0.78281 0.79652 1.19103 1.20887 1.20633 0.91670 0.92272 0.90716 0.92734 0.91368 0.88441 0.85884 0.88872 0.90648 0.96752 0.93144 0.90509 0.92561 0.95132 0.95211 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 7.88 71.98 0.57 -2.79 16 2 C 0.08 2.66 2.32 44.92 0.10 2.77 16 3 H 0.07 2.55 5.86 -2.38 -0.01 2.54 16 4 C -0.15 -4.88 2.89 -10.15 -0.03 -4.91 16 5 C 0.02 0.43 6.51 86.40 0.56 0.99 16 6 N -0.65 -16.84 8.53 -524.22 -4.47 -21.31 16 7 C 0.02 0.50 8.26 86.41 0.71 1.21 16 8 N -0.54 -22.48 4.58 -876.18 -4.02 -26.50 16 9 C 0.04 1.40 8.09 127.69 1.03 2.43 16 10 C 0.22 11.16 1.87 44.17 0.08 11.24 16 11 H -0.03 -1.96 6.40 -2.39 -0.02 -1.97 16 12 C -0.12 -6.01 8.77 71.98 0.63 -5.38 16 13 C -0.52 -28.88 7.88 25.60 0.20 -28.68 16 14 H 0.06 3.26 6.41 -2.91 -0.02 3.24 16 15 C 0.01 0.47 5.30 84.65 0.45 0.92 16 16 N -0.92 -54.13 11.33 21.45 0.24 -53.88 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H 0.06 1.53 4.74 -2.39 -0.01 1.52 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.45 6.63 -2.39 -0.02 1.43 16 24 H 0.05 2.33 6.38 -2.39 -0.02 2.32 16 25 H 0.07 2.05 7.27 -2.39 -0.02 2.03 16 26 H 0.10 2.14 5.53 -2.38 -0.01 2.13 16 27 H 0.33 6.51 8.91 -89.69 -0.80 5.71 16 28 H 0.09 1.90 6.77 -2.38 -0.02 1.88 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.01 0.55 5.44 -2.38 -0.01 0.54 16 31 H 0.05 2.14 6.11 -2.39 -0.01 2.13 16 32 H 0.08 2.38 6.30 -2.38 -0.02 2.37 16 33 H 0.06 3.11 6.10 -2.39 -0.01 3.10 16 34 H 0.03 1.34 6.17 -2.39 -0.01 1.32 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -62.33 262.83 -1.62 -63.95 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.28 Total: 13.42 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.32 Total: -22.18 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -8.24 Total: -101.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.33 -1.62 -63.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.130 kcal (2) G-P(sol) polarization free energy of solvation -62.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds