Wall clock time and date at job start Mon Mar 30 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47239 * 2 1 4 4 C 1.50696 * 109.47456 * 120.00471 * 2 1 3 5 5 H 1.07998 * 120.00211 * 119.99655 * 4 2 1 6 6 C 1.37879 * 119.99843 * 300.00274 * 4 2 1 7 7 N 1.31519 * 119.99776 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47362 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47208 * 119.99696 * 8 6 4 11 11 H 1.48497 * 109.47301 * 239.99599 * 8 6 4 12 12 N 1.46900 * 109.47033 * 240.00617 * 2 1 3 13 13 C 1.46900 * 110.99930 * 306.04514 * 12 2 1 14 14 C 1.46901 * 111.00442 * 69.99825 * 12 2 1 15 15 H 1.08998 * 109.47258 * 300.00442 * 14 12 2 16 16 C 1.53007 * 109.47071 * 59.99923 * 14 12 2 17 17 C 1.52997 * 109.47600 * 180.02562 * 14 12 2 18 18 C 1.53944 * 113.73142 * 277.59911 * 17 14 12 19 19 N 1.47956 * 86.17692 * 221.91898 * 18 17 14 20 20 C 1.47965 * 90.76623 * 24.69070 * 19 18 17 21 21 H 1.09001 * 109.46982 * 300.00016 * 1 2 3 22 22 H 1.09002 * 109.47196 * 59.99169 * 1 2 3 23 23 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99451 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.47339 * 183.95254 * 13 12 2 26 26 H 1.08994 * 109.47114 * 303.95665 * 13 12 2 27 27 H 1.08997 * 109.47133 * 63.95542 * 13 12 2 28 28 H 1.09004 * 109.47042 * 292.37370 * 16 14 12 29 29 H 1.08999 * 109.46711 * 52.36578 * 16 14 12 30 30 H 1.08992 * 109.47345 * 172.37142 * 16 14 12 31 31 H 1.08998 * 112.93753 * 49.29698 * 17 14 12 32 32 H 1.09001 * 113.75588 * 336.23129 * 18 17 14 33 33 H 1.08997 * 113.75842 * 107.60289 * 18 17 14 34 34 H 1.00900 * 110.99897 * 271.79516 * 19 18 17 35 35 H 1.09004 * 113.75711 * 220.99729 * 20 19 18 36 36 H 1.08997 * 113.75982 * 89.62949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8159 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4091 15 1 0.6792 0.2553 -2.5105 16 6 2.4593 1.4503 -2.3009 17 6 2.2753 -0.6546 -3.6348 18 6 3.7830 -0.4657 -3.8815 19 7 3.4324 -0.3405 -5.3134 20 6 2.0643 0.0989 -4.9604 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7095 1.1615 3.4844 25 1 1.8663 -2.5519 -2.1651 26 1 1.6465 -2.5987 -0.3994 27 1 0.3556 -1.9519 -1.4401 28 1 1.9940 2.0411 -1.5118 29 1 3.5115 1.2928 -2.0643 30 1 2.3755 1.9808 -3.2493 31 1 1.9511 -1.6949 -3.6650 32 1 4.1879 0.4483 -3.4470 33 1 4.3797 -1.3483 -3.6510 34 1 3.4174 -1.2440 -5.7624 35 1 1.2877 -0.3326 -5.5920 36 1 1.9666 1.1780 -4.8415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686258065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:45 Heat of formation + Delta-G solvation = 47.162627 kcal Electronic energy + Delta-G solvation = -15107.685083 eV Core-core repulsion = 12821.417282 eV Total energy + Delta-G solvation = -2286.267801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85472 -36.93334 -32.93336 -30.76504 -28.71538 -26.26775 -25.70472 -25.21086 -24.35728 -22.19791 -19.64567 -18.02103 -16.54073 -16.19733 -15.38453 -14.77846 -14.45003 -13.88351 -13.28738 -12.92713 -12.64438 -12.58109 -12.30384 -11.63031 -11.47492 -11.08769 -11.06570 -10.86142 -10.72952 -10.71645 -10.59634 -10.33249 -10.09535 -9.98847 -9.55319 -8.83073 -8.35706 -8.27230 -7.08508 -5.99371 -4.02330 3.30362 3.38354 3.42879 4.21884 4.41300 4.63733 4.97385 5.25866 5.33363 5.53370 5.56419 5.67072 5.82389 5.87482 6.00035 6.10127 6.15469 6.21512 6.30400 6.42631 6.47927 6.60202 6.68908 6.81713 6.85879 6.89904 7.16986 7.42189 7.52531 7.73104 7.87484 8.18846 8.41858 8.64482 9.04313 9.62534 11.07818 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052345 B = 0.007878 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.784787 B = 3553.346920 C = 3660.470448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.207 3.793 3 H 0.045 0.955 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.528 5.528 13 C 0.033 3.967 14 C 0.087 3.913 15 H 0.032 0.968 16 C -0.144 4.144 17 C -0.149 4.149 18 C 0.028 3.972 19 N -0.666 5.666 20 C 0.017 3.983 21 H 0.087 0.913 22 H 0.006 0.994 23 H 0.029 0.971 24 H 0.259 0.741 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.014 0.986 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.329 0.671 35 H 0.064 0.936 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -2.168 -10.765 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.101 3.899 3 H 0.063 0.937 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.115 4.115 14 C -0.022 4.022 15 H 0.050 0.950 16 C -0.201 4.201 17 C -0.169 4.169 18 C -0.101 4.101 19 N -0.292 5.292 20 C -0.114 4.114 21 H 0.106 0.894 22 H 0.024 0.976 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.943 -1.425 -10.892 11.156 hybrid contribution -1.303 -1.247 1.289 2.217 sum 0.639 -2.672 -9.604 9.989 Atomic orbital electron populations 1.22395 1.01143 0.99252 1.00341 1.19368 0.89542 0.94985 0.86021 0.93693 1.21171 1.30219 1.12359 0.89725 0.92022 1.24929 0.95320 0.95176 0.98974 1.69899 1.37299 1.23152 1.23199 0.86490 0.78505 0.79684 0.83017 1.19799 1.21082 1.21248 1.62406 1.58609 1.02060 1.02084 1.22248 0.96018 0.92316 1.00957 1.21427 0.96847 0.93635 0.90339 0.94988 1.21948 1.01560 0.95943 1.00620 1.24302 0.97266 1.00073 0.95266 1.23726 0.95617 1.02714 0.88046 1.65116 1.17723 1.30457 1.15888 1.23764 0.91402 1.01387 0.94823 0.89441 0.97552 0.95185 0.93133 0.94004 0.90982 0.96750 0.92151 0.91672 0.93221 0.89351 0.87677 0.91459 0.85714 0.91728 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.22 37.16 0.31 -3.87 16 2 C 0.21 5.12 2.12 -68.87 -0.15 4.98 16 3 H 0.05 1.21 5.99 -51.93 -0.31 0.90 16 4 C -0.50 -13.52 7.91 -34.44 -0.27 -13.79 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.53 -11.05 4.57 -228.30 -1.04 -12.09 16 13 C 0.03 0.64 8.30 60.06 0.50 1.14 16 14 C 0.09 1.54 2.02 -67.71 -0.14 1.40 16 15 H 0.03 0.61 6.62 -51.93 -0.34 0.26 16 16 C -0.14 -2.44 7.62 37.16 0.28 -2.16 16 17 C -0.15 -2.17 3.55 -89.69 -0.32 -2.49 16 18 C 0.03 0.40 8.16 -2.76 -0.02 0.37 16 19 N -0.67 -8.53 8.55 -117.03 -1.00 -9.53 16 20 C 0.02 0.21 8.26 -2.77 -0.02 0.19 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 22 H 0.01 0.13 6.69 -51.93 -0.35 -0.22 16 23 H 0.03 0.71 6.41 -51.93 -0.33 0.37 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 26 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 27 H 0.01 0.28 6.46 -51.93 -0.34 -0.06 16 28 H 0.06 1.14 6.62 -51.93 -0.34 0.79 16 29 H 0.06 1.13 6.57 -51.93 -0.34 0.79 16 30 H 0.05 0.72 6.19 -51.93 -0.32 0.40 16 31 H 0.09 1.28 6.06 -51.93 -0.31 0.97 16 32 H 0.11 1.56 5.64 -51.93 -0.29 1.27 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.33 3.65 8.89 -39.29 -0.35 3.30 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.26 6.30 -51.93 -0.33 0.93 16 LS Contribution 265.79 15.07 4.01 4.01 Total: -1.00 -28.00 265.79 -7.65 -35.66 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.29 Total: 3.24 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -1.42 Total: -46.50 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.00 -7.65 -35.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686258065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.819 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds